EsuBft957_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft957_2a-0001
Unique NameEsuBft957_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:226213..227767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft957_2
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsSSF56672
Protein domainsTRANSMEMBRANE
Protein domainsPTHR19446
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteline-1 retrotransposable element orf2 protein os:homo sapiens pe:1 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl33208|Metazoa
Length1269
Hectar predicted targeting categoryother localisation
Evalue2.54e-41
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-13
Date creation2016-06-13
DescriptionRibonuclease H protein
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0006259
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft957_2aEsuBft957_2aEctocarpus subulatus male Bft15bgeneScaffold_68 226213..227767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_2a-0001EsuBft957_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 226392..227262 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_2a-0001-exonagat-exon-32301Ectocarpus subulatus male Bft15bexonScaffold_68 226213..226467 +
EsuBft957_2a-0001-exonagat-exon-32300Ectocarpus subulatus male Bft15bexonScaffold_68 226555..227056 +
EsuBft957_2a-0001-exonEsuBft957_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 227256..227767 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_2a-0001-exonagat-five_prime_utr-15282Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_68 226213..226391 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_2a-0001-cdsEsuBft957_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 226392..226467 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_2a-0001-exonagat-three_prime_utr-23478Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 227263..227767 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft957_2a-0001 ID=EsuBft957_2a-0001|Name=EsuBft957_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1269bp|location=Sequence derived from alignment at Scaffold_68:226213..227767+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCTC
TACTTGAGGTTGAGGAAGCGGTACGGGAAATGGCCAACAGAAAGGCCGTC
GGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGA
TCAAGTGCTGTTCAAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGG
GCATCTCGCTCGTCGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCT
ACACGACTGAGCCACTACTGCGAGCGAGAGGGCATCCTCCCGGAGGAGGA
GAGCGGTTTCCGCCCACACCGGTCGACGCTCGACATGCTGTTCGCCATCC
AGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGT
TTCGTCGACCTCACCAAGGCATACGATTCGGTGGACCGAGACCTACTGTG
GGACGTGCTCCGACGCTTCGGCGTGCCCCCGAAGATGCTGGCGGTCATTC
GCCACTTCCACGAGGGCATGAGGGCGCGCGTCCGAACGGACGACGGGCAG
TACTCGGAATGGTTCGACGTGGGCCAAGGCCTCCGACAGGGATGCAACCT
GGCCTCGCCACTGTTCAACTTGTTCTTGGCCGCGATGCTCATGGTCGCCG
TGGCCGATGCCTGATGCTGGTGCGTTACCCTTTGATTTTTTCTTTCGGCG
GGTGTGGGACGCGTCCTCCTTTATTTTTGTGTTTGTTTTATTTTGATCGG
TGTCCGAGGGATCTTTTCTCGAACGGTCGGTGCGATACCTGTTATTTTCT
TTCAATCATTTTGTTTTCTTGTTCCGAGTGGTTCGTACCCTATTTTTGTT
TTGTTTCTCCGCGGCGTCGTATGTGCAAGGTTTTGAGACCACGGGCTTCC
CATTTTTTGTGGACTATAGAGCTAATGTGAGAGACAACAACAACAACAAC
TCCGCACATATGCATACCAAATTGAAAATACGTTTGTAAACTGATGGAGA
TTGCATGTCCTAAAACTAACAGGGTGCGACACACAAAACGCCCGACTAAC
CAACAGCACCCAAAACTTTCGTCTGCACGTTCCCAACATAACATATATGA
GACACACAAGGCAGCTACCAAACTGATTTGTTGAGCCTGTTATCCGCAGG
GGACATGTCCCTATATGCT
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protein sequence of EsuBft957_2a-0001

>EsuBft957_2 ID=EsuBft957_2|Name=EsuBft957_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=194bp
MANRKAVGPDDLPAELIKLFLDGDQVLFKKGDTMECGNYRGISLVAHAGK
VLLKVVATRLSHYCEREGILPEEESGFRPHRSTLDMLFAIQRLHELARKK
STAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRAR
VRTDDGQYSEWFDVGQGLRQGCNLASPLFNLFLAAMLMVAVADA
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mRNA from alignment at Scaffold_68:226213..227767+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft957_2a-0001 ID=EsuBft957_2a-0001|Name=EsuBft957_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1555bp|location=Sequence derived from alignment at Scaffold_68:226213..227767+ (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCTC
TACTTGAGGTTGAGGAAGCGGTACGGGAAATGGCCAACAGAAAGGCCGTC
GGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGA
TCAAGGTCTCCTCCGCGAATTCCTCGCCACTGTCGTGGACGTGTGGCAGA
CTGGCGACGTACCATAACAGTGGAACGATGCCACCATCAAAGTGCTGTTC
AAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGGCATCTCGCTCGT
CGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCTACACGACTGAGCC
ACTACTGCGAGCGAGAGGGCATCCTCCCGGAGGAGGAGAGCGGTTTCCGC
CCACACCGGTCGACGCTCGACATGCTGTTCGCCATCCAGCGGCTCCATGA
GCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGTTTCGTCGACCTCA
CCAAGGCATACGATTCGGTGGACCGAGACCTACTGTGGGACGTGCTCCGA
CGCTTCGGCGTGCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCCACGA
GGGCATGAGGGCGCGCGTCCGAACGGACGACGGGCAGTACTCGGAATGGT
TCGACGTGGGCCAAGGCCTCCGACAGGGATGCAACCTGGCCTCGCCACTG
TTCAACTTGTTCTTGGCCGCGATGCTCATGGTCGCCGTGGCCGAGTTCGA
CAAGGACCCCAAACCTTCGGCCTCTGTGCTGTGTTTCTGTGTTTCTTTTT
TTCATGACCTCCCTGCCTACTGTGATGTGTTGGGTACCGTGATCTCGCTT
TGCTGTTGCCTTTGTTTTTGTACGTCTGGCTGTATGCCCATCTGCCGCCT
CTTTGTCCGGTTTGCTCCGTTACTCCCATGCCCTGGTGCGTAGTGCCTGA
TGCTGGTGCGTTACCCTTTGATTTTTTCTTTCGGCGGGTGTGGGACGCGT
CCTCCTTTATTTTTGTGTTTGTTTTATTTTGATCGGTGTCCGAGGGATCT
TTTCTCGAACGGTCGGTGCGATACCTGTTATTTTCTTTCAATCATTTTGT
TTTCTTGTTCCGAGTGGTTCGTACCCTATTTTTGTTTTGTTTCTCCGCGG
CGTCGTATGTGCAAGGTTTTGAGACCACGGGCTTCCCATTTTTTGTGGAC
TATAGAGCTAATGTGAGAGACAACAACAACAACAACTCCGCACATATGCA
TACCAAATTGAAAATACGTTTGTAAACTGATGGAGATTGCATGTCCTAAA
ACTAACAGGGTGCGACACACAAAACGCCCGACTAACCAACAGCACCCAAA
ACTTTCGTCTGCACGTTCCCAACATAACATATATGAGACACACAAGGCAG
CTACCAAACTGATTTGTTGAGCCTGTTATCCGCAGGGGACATGTCCCTAT
ATGCT
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Coding sequence (CDS) from alignment at Scaffold_68:226213..227767+

>EsuBft957_2a-0001 ID=EsuBft957_2a-0001|Name=EsuBft957_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=585bp|location=Sequence derived from alignment at Scaffold_68:226213..227767+ (Ectocarpus subulatus male Bft15b)
ATGGCCAACAGAAAGGCCGTCGGGCCGGACGACCTACCGGCTGAGCTGAT
CAAGCTTTTCCTGGACGGAGATCAAGTGCTGTTCAAGAAGGGGGACACGA
TGGAGTGCGGCAACTACCGGGGCATCTCGCTCGTCGCACACGCCGGCAAG
GTGCTGCTTAAGGTCGTCGCTACACGACTGAGCCACTACTGCGAGCGAGA
GGGCATCCTCCCGGAGGAGGAGAGCGGTTTCCGCCCACACCGGTCGACGC
TCGACATGCTGTTCGCCATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAG
AGTACTGCGGTGTTCGCGTGTTTCGTCGACCTCACCAAGGCATACGATTC
GGTGGACCGAGACCTACTGTGGGACGTGCTCCGACGCTTCGGCGTGCCCC
CGAAGATGCTGGCGGTCATTCGCCACTTCCACGAGGGCATGAGGGCGCGC
GTCCGAACGGACGACGGGCAGTACTCGGAATGGTTCGACGTGGGCCAAGG
CCTCCGACAGGGATGCAACCTGGCCTCGCCACTGTTCAACTTGTTCTTGG
CCGCGATGCTCATGGTCGCCGTGGCCGATGCCTGA
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