Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FP33 |
| ProteomeId | EsuBft2314_5 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 64 |
| Hectar predicted targeting category | other localisation |
| Evalue | 0.000815 |
| EggNOG OGs | COG5021@1|root,KOG0940@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | ubiquitin protein ligase activity |
| COG category | O |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2314_5a-0001 ID=EsuBft2314_5a-0001|Name=EsuBft2314_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=646bp|location=Sequence derived from alignment at Scaffold_68:86432..87960- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGATCAAGCAACAGTTTGACTCGTTGGAAGTCATCAAGGAATTGGA
CCCAATCGAATTCGCCGAGATTATTGGAAACATCGGCGGGTTTAGGGATC
TGATCCTGATATTATGGCCCATTTTCTTTGTGGCGATCAGCCGGCCAGAA
CCACATCTCAAGCCTCGCAACTTTAAGAAATCCGTGGCCAGAACAGTCGA
GCGCGCCTCGGGAGTCACGAAAACGGTCGCCAATTTGGGGCCTATGAGGC
GTCTAGAATCTATGGAGATGAGAAATAAAACGAGCGGTGCATCTCTGGAA
GACGGATTCCAAGAAGAGCCGGCACCGTTGGAACATCCACCCGCATTAGG
GCTGCAGAGGAGCGTTTCACGGCGATTAGGTAACGGCTTCCGGGTGTTAC
AACCCGATGTTTAACCCGTCGGGGACATCCATCCCTAAGCTTGTCGGGGA
ACAAGCATGGTGACGCCAAACACTTTTGCAAGGCGCTCGGCATTGTTACG
TTCAGTTCGATGGGGAGCGCAGAGCAAACGGCGGGCCAACGCATGCTTGA
CTGTATATACGCCAACGGAGCCAAATTTAAGCGTTGTACCTCAAGCATGG
AGTAGAATAGTATCGCAAGTACCTTGAGTGGTATCCTCGTAATCCG back to topprotein sequence of EsuBft2314_5a-0001 >EsuBft2314_5 ID=EsuBft2314_5|Name=EsuBft2314_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=137bp
MEIKQQFDSLEVIKELDPIEFAEIIGNIGGFRDLILILWPIFFVAISRPE
PHLKPRNFKKSVARTVERASGVTKTVANLGPMRRLESMEMRNKTSGASLE
DGFQEEPAPLEHPPALGLQRSVSRRLGNGFRVLQPDV back to topmRNA from alignment at Scaffold_68:86432..87960- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2314_5a-0001 ID=EsuBft2314_5a-0001|Name=EsuBft2314_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1529bp|location=Sequence derived from alignment at Scaffold_68:86432..87960- (Ectocarpus subulatus male Bft15b)
ATGGAGATCAAGCAACAGTTTGACTCGTTGGAAGTCATCAAGGAATTGGA
CCCAATCGAATTCGCCGAGATTATTGGAAACATCGGCGGGTTTAGGGGTG
AGTGAAGCCGAAGAAAACATCAGCGCCAGCGGTGAGCGCGCAGGGTCTGC
ACCAGGCTGAGTTTGCTGCAGTTGGTACCCGCTATGCGTTCTGTACCATC
AATAACTCTTGTTGGAAACCCTGTACGTATTTCATCTATCTCAATCACCT
CCATGTGTCTACCTTGGGGTTCTGCGCTCGTCCGTTTTGCAGATCTGATC
CTGATATTATGGCCCATTTTCTTTGTGGCGATCAGCCGGCCAGAACCACA
TCTCAAGCCTCGCAACTTTAAGAAATCCGTGGCCAGAACAGTCGAGCGCG
CCTCGGGAGTCACGAAAACGGTCGCCAATTTGGGGCCTATGAGGCGTCTA
GAATCTATGGAGATGAGAAATAAAACGAGCGGTGCATCTCTGGAAGACGG
ATTCCAAGAAGAGCCGGCACCGTTGGAACATCCACCCGCATTAGGGCTGC
AGGTAGGTGTGCGTAACCCCATCCTTTGTCTCCTGCCACTAACTAGAGCG
CTTCTCTGGAGACGAATTTCGCCCATGGTTTGGCGCATTTTTCATATCAG
TCGTTGTCTAGCAAGGGAGGCGCTACCCTTCGACTATTTTGGAAGCACCA
AACAGTCCAATGACCAGTAACTATGCTTGCCGATGTTTGTCGTTCGGGTA
TATCGTCAAATGTTGGGTTGGTTGGCAGTCGGCCATAATGGAACAAATCG
TAACGGTTTAGAGGGATATTAGTAGTGCTTGATCAATTTTGATGACCTTG
TGCCCTGCCTTCCCGTGCCGTCGGCTGCAAATTCAATGGATAGTATTGCC
CAAGAAGCGACAATGCCTACCGTTCTGGTCGTTAGTCAAGGTTTCTGCAC
AGCCTGCTGCGTAGATCCTACAACTCTGTATTGCCGATGCACAAAGCCGG
AAGTCCGGCCGGACGTTTTTTCGCTGTTCGCCCTTCTGCGTTGTGTTGGT
TCGGTCCTTACGTGCACAGAGCCACCACGTTAGTTTGACATCTGGCCTCC
ATACCCCCGTTGCTCTCTGTCGCTCCCGGTTCCGGCGATGTGTGGTTGCA
TGTGGGCTGTGGGACGCTTATCTTCCGCCCGGCGAAAACCGGTTGTCTTA
TGCCTCGCGTGCAACGCGTTGAAACTCACTCACACCCCAGAGGAGCGTTT
CACGGCGATTAGGTAACGGCTTCCGGGTGTTACAACCCGATGTTTAACCC
GTCGGGGACATCCATCCCTAAGCTTGTCGGGGAACAAGCATGGTGACGCC
AAACACTTTTGCAAGGCGCTCGGCATTGTTACGTTCAGTTCGATGGGGAG
CGCAGAGCAAACGGCGGGCCAACGCATGCTTGACTGTATATACGCCAACG
GAGCCAAATTTAAGCGTTGTACCTCAAGCATGGAGTAGAATAGTATCGCA
AGTACCTTGAGTGGTATCCTCGTAATCCG back to topCoding sequence (CDS) from alignment at Scaffold_68:86432..87960- >EsuBft2314_5a-0001 ID=EsuBft2314_5a-0001|Name=EsuBft2314_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=414bp|location=Sequence derived from alignment at Scaffold_68:86432..87960- (Ectocarpus subulatus male Bft15b)
ATGGAGATCAAGCAACAGTTTGACTCGTTGGAAGTCATCAAGGAATTGGA
CCCAATCGAATTCGCCGAGATTATTGGAAACATCGGCGGGTTTAGGGATC
TGATCCTGATATTATGGCCCATTTTCTTTGTGGCGATCAGCCGGCCAGAA
CCACATCTCAAGCCTCGCAACTTTAAGAAATCCGTGGCCAGAACAGTCGA
GCGCGCCTCGGGAGTCACGAAAACGGTCGCCAATTTGGGGCCTATGAGGC
GTCTAGAATCTATGGAGATGAGAAATAAAACGAGCGGTGCATCTCTGGAA
GACGGATTCCAAGAAGAGCCGGCACCGTTGGAACATCCACCCGCATTAGG
GCTGCAGAGGAGCGTTTCACGGCGATTAGGTAACGGCTTCCGGGTGTTAC
AACCCGATGTTTAA back to top
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