EsuBft2314_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2314_5a-0001
Unique NameEsuBft2314_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:86432..87960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FP33
ProteomeIdEsuBft2314_5
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length64
Hectar predicted targeting categoryother localisation
Evalue0.000815
EggNOG OGsCOG5021@1|root,KOG0940@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionubiquitin protein ligase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_5aEsuBft2314_5aEctocarpus subulatus male Bft15bgeneScaffold_68 86432..87960 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_5a-0001-exonagat-exon-68500Ectocarpus subulatus male Bft15bexonScaffold_68 86432..86720 -
EsuBft2314_5a-0001-exonEsuBft2314_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 87409..87668 -
EsuBft2314_5a-0001-exonagat-exon-68501Ectocarpus subulatus male Bft15bexonScaffold_68 87864..87960 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_5a-0001-exonagat-three_prime_utr-9266Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 86432..86663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_5a-0001-cdsEsuBft2314_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 86664..86720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_5a-0001EsuBft2314_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 86664..87960 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2314_5a-0001 ID=EsuBft2314_5a-0001|Name=EsuBft2314_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=646bp|location=Sequence derived from alignment at Scaffold_68:86432..87960- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGATCAAGCAACAGTTTGACTCGTTGGAAGTCATCAAGGAATTGGA
CCCAATCGAATTCGCCGAGATTATTGGAAACATCGGCGGGTTTAGGGATC
TGATCCTGATATTATGGCCCATTTTCTTTGTGGCGATCAGCCGGCCAGAA
CCACATCTCAAGCCTCGCAACTTTAAGAAATCCGTGGCCAGAACAGTCGA
GCGCGCCTCGGGAGTCACGAAAACGGTCGCCAATTTGGGGCCTATGAGGC
GTCTAGAATCTATGGAGATGAGAAATAAAACGAGCGGTGCATCTCTGGAA
GACGGATTCCAAGAAGAGCCGGCACCGTTGGAACATCCACCCGCATTAGG
GCTGCAGAGGAGCGTTTCACGGCGATTAGGTAACGGCTTCCGGGTGTTAC
AACCCGATGTTTAACCCGTCGGGGACATCCATCCCTAAGCTTGTCGGGGA
ACAAGCATGGTGACGCCAAACACTTTTGCAAGGCGCTCGGCATTGTTACG
TTCAGTTCGATGGGGAGCGCAGAGCAAACGGCGGGCCAACGCATGCTTGA
CTGTATATACGCCAACGGAGCCAAATTTAAGCGTTGTACCTCAAGCATGG
AGTAGAATAGTATCGCAAGTACCTTGAGTGGTATCCTCGTAATCCG
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protein sequence of EsuBft2314_5a-0001

>EsuBft2314_5 ID=EsuBft2314_5|Name=EsuBft2314_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=137bp
MEIKQQFDSLEVIKELDPIEFAEIIGNIGGFRDLILILWPIFFVAISRPE
PHLKPRNFKKSVARTVERASGVTKTVANLGPMRRLESMEMRNKTSGASLE
DGFQEEPAPLEHPPALGLQRSVSRRLGNGFRVLQPDV
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mRNA from alignment at Scaffold_68:86432..87960-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2314_5a-0001 ID=EsuBft2314_5a-0001|Name=EsuBft2314_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1529bp|location=Sequence derived from alignment at Scaffold_68:86432..87960- (Ectocarpus subulatus male Bft15b)
ATGGAGATCAAGCAACAGTTTGACTCGTTGGAAGTCATCAAGGAATTGGA
CCCAATCGAATTCGCCGAGATTATTGGAAACATCGGCGGGTTTAGGGGTG
AGTGAAGCCGAAGAAAACATCAGCGCCAGCGGTGAGCGCGCAGGGTCTGC
ACCAGGCTGAGTTTGCTGCAGTTGGTACCCGCTATGCGTTCTGTACCATC
AATAACTCTTGTTGGAAACCCTGTACGTATTTCATCTATCTCAATCACCT
CCATGTGTCTACCTTGGGGTTCTGCGCTCGTCCGTTTTGCAGATCTGATC
CTGATATTATGGCCCATTTTCTTTGTGGCGATCAGCCGGCCAGAACCACA
TCTCAAGCCTCGCAACTTTAAGAAATCCGTGGCCAGAACAGTCGAGCGCG
CCTCGGGAGTCACGAAAACGGTCGCCAATTTGGGGCCTATGAGGCGTCTA
GAATCTATGGAGATGAGAAATAAAACGAGCGGTGCATCTCTGGAAGACGG
ATTCCAAGAAGAGCCGGCACCGTTGGAACATCCACCCGCATTAGGGCTGC
AGGTAGGTGTGCGTAACCCCATCCTTTGTCTCCTGCCACTAACTAGAGCG
CTTCTCTGGAGACGAATTTCGCCCATGGTTTGGCGCATTTTTCATATCAG
TCGTTGTCTAGCAAGGGAGGCGCTACCCTTCGACTATTTTGGAAGCACCA
AACAGTCCAATGACCAGTAACTATGCTTGCCGATGTTTGTCGTTCGGGTA
TATCGTCAAATGTTGGGTTGGTTGGCAGTCGGCCATAATGGAACAAATCG
TAACGGTTTAGAGGGATATTAGTAGTGCTTGATCAATTTTGATGACCTTG
TGCCCTGCCTTCCCGTGCCGTCGGCTGCAAATTCAATGGATAGTATTGCC
CAAGAAGCGACAATGCCTACCGTTCTGGTCGTTAGTCAAGGTTTCTGCAC
AGCCTGCTGCGTAGATCCTACAACTCTGTATTGCCGATGCACAAAGCCGG
AAGTCCGGCCGGACGTTTTTTCGCTGTTCGCCCTTCTGCGTTGTGTTGGT
TCGGTCCTTACGTGCACAGAGCCACCACGTTAGTTTGACATCTGGCCTCC
ATACCCCCGTTGCTCTCTGTCGCTCCCGGTTCCGGCGATGTGTGGTTGCA
TGTGGGCTGTGGGACGCTTATCTTCCGCCCGGCGAAAACCGGTTGTCTTA
TGCCTCGCGTGCAACGCGTTGAAACTCACTCACACCCCAGAGGAGCGTTT
CACGGCGATTAGGTAACGGCTTCCGGGTGTTACAACCCGATGTTTAACCC
GTCGGGGACATCCATCCCTAAGCTTGTCGGGGAACAAGCATGGTGACGCC
AAACACTTTTGCAAGGCGCTCGGCATTGTTACGTTCAGTTCGATGGGGAG
CGCAGAGCAAACGGCGGGCCAACGCATGCTTGACTGTATATACGCCAACG
GAGCCAAATTTAAGCGTTGTACCTCAAGCATGGAGTAGAATAGTATCGCA
AGTACCTTGAGTGGTATCCTCGTAATCCG
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Coding sequence (CDS) from alignment at Scaffold_68:86432..87960-

>EsuBft2314_5a-0001 ID=EsuBft2314_5a-0001|Name=EsuBft2314_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=414bp|location=Sequence derived from alignment at Scaffold_68:86432..87960- (Ectocarpus subulatus male Bft15b)
ATGGAGATCAAGCAACAGTTTGACTCGTTGGAAGTCATCAAGGAATTGGA
CCCAATCGAATTCGCCGAGATTATTGGAAACATCGGCGGGTTTAGGGATC
TGATCCTGATATTATGGCCCATTTTCTTTGTGGCGATCAGCCGGCCAGAA
CCACATCTCAAGCCTCGCAACTTTAAGAAATCCGTGGCCAGAACAGTCGA
GCGCGCCTCGGGAGTCACGAAAACGGTCGCCAATTTGGGGCCTATGAGGC
GTCTAGAATCTATGGAGATGAGAAATAAAACGAGCGGTGCATCTCTGGAA
GACGGATTCCAAGAAGAGCCGGCACCGTTGGAACATCCACCCGCATTAGG
GCTGCAGAGGAGCGTTTCACGGCGATTAGGTAACGGCTTCCGGGTGTTAC
AACCCGATGTTTAA
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