EsuBft1397_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1397_5a-0001
Unique NameEsuBft1397_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:5..879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1397_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length49
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1397_5aEsuBft1397_5aEctocarpus subulatus male Bft15bgeneScaffold_68 5..879 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1397_5a-0001-exonagat-exon-38104Ectocarpus subulatus male Bft15bexonScaffold_68 5..321 -
EsuBft1397_5a-0001-exonEsuBft1397_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 705..879 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1397_5a-0001-exonagat-three_prime_utr-3573Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 5..64 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1397_5a-0001-cdsEsuBft1397_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 65..321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1397_5a-0001EsuBft1397_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 65..879 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1397_5a-0001 ID=EsuBft1397_5a-0001|Name=EsuBft1397_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=492bp|location=Sequence derived from alignment at Scaffold_68:5..879- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTTCGCCATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTAC
TGCGGTCTTCGCGTGCTTCGTCGATCTCACCAAGGCGTACGATTCGGTGG
ACCGAGATCTGCTGTGGGACTGTCTCTTATACACATCTAGATNAGAGTAC
ACGGGCAAGAAGGGCAGGTCAGCGGACCGCCCCCTGTCCTATGCCCAGGC
CCTCATCCAGGTAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAAC
GGAGACTTTGTTTCGCGGGCTTTGTTTTGCGCATGGAGGACAACTGCCTC
CCCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGGATACCGGGG
CGGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCT
TCAATATGGGAGACGAAACAGAAGGGGGGTAAATGGAAAGAGAGCGCCAA
GGACCCCGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGC
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protein sequence of EsuBft1397_5a-0001

>EsuBft1397_5 ID=EsuBft1397_5|Name=EsuBft1397_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=143bp
MLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDCLLYTSRXEY
TGKKGRSADRPLSYAQALIQVGCEETIEATVRKRRLCFAGFVLRMEDNCL
PKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDETEGG
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mRNA from alignment at Scaffold_68:5..879-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1397_5a-0001 ID=EsuBft1397_5a-0001|Name=EsuBft1397_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=875bp|location=Sequence derived from alignment at Scaffold_68:5..879- (Ectocarpus subulatus male Bft15b)
ATGCTGTTCGCCATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTAC
TGCGGTCTTCGCGTGCTTCGTCGATCTCACCAAGGCGTACGATTCGGTGG
ACCGAGATCTGCTGTGGGACTGTCTCTTATACACATCTAGATNAGAGTAC
ACGGGCAAGAAGGGCAGGTCAGCGGGTAAGAAGACGACGGTGGTGACGGA
CGCGGAGGCCCTGTGGGCCACGCTCTCCGCTGACGACGCGGCCTAGCCGG
AGAGTCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCCTGTTC
GGACTGATGGTATCGGAGCTAAAGAAGGAAATCATGTGCATGATGCCGAA
AGGGATCGAGGAACGCCCGTTCACGGTCAGCGCCGCTGGCCAGACGTACA
AGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCTCACGCGGTGCATTGGCTGGAGCAAGCGGAA
ACGCTCAGACCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGTAGGCT
GCGAGGAAACCATCGAGGCCACCGTGCGCAAACGGAGACTTTGTTTCGCG
GGCTTTGTTTTGCGCATGGAGGACAACTGCCTCCCCAAGCGCATGCTGTT
AGGAGCGATGGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACT
GGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCTTCAATATGGGAGACGAA
ACAGAAGGGGGGTAAATGGAAAGAGAGCGCCAAGGACCCCGAGGTGTGGT
ACAACAAGGTCGAGGACGGGGCGGC
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Coding sequence (CDS) from alignment at Scaffold_68:5..879-

>EsuBft1397_5a-0001 ID=EsuBft1397_5a-0001|Name=EsuBft1397_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=432bp|location=Sequence derived from alignment at Scaffold_68:5..879- (Ectocarpus subulatus male Bft15b)
ATGCTGTTCGCCATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTAC
TGCGGTCTTCGCGTGCTTCGTCGATCTCACCAAGGCGTACGATTCGGTGG
ACCGAGATCTGCTGTGGGACTGTCTCTTATACACATCTAGATNAGAGTAC
ACGGGCAAGAAGGGCAGGTCAGCGGACCGCCCCCTGTCCTATGCCCAGGC
CCTCATCCAGGTAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAAC
GGAGACTTTGTTTCGCGGGCTTTGTTTTGCGCATGGAGGACAACTGCCTC
CCCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGGATACCGGGG
CGGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCT
TCAATATGGGAGACGAAACAGAAGGGGGGTAA
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