EsuBft964_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft964_9a	EsuBft964_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_604 328499..331614 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft964_9a-0001	EsuBft964_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_604 328701..331143 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft964_9a-0001-exon	agat-exon-110619	Ectocarpus subulatus male Bft15b	exon	Scaffold_604 328499..329111 +
EsuBft964_9a-0001-exon	EsuBft964_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_604 329987..330201 +
EsuBft964_9a-0001-exon	agat-exon-110620	Ectocarpus subulatus male Bft15b	exon	Scaffold_604 330981..331614 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft964_9a-0001-exon	agat-five_prime_utr-15331	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_604 328499..328700 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft964_9a-0001-cds	EsuBft964_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_604 328701..329111 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft964_9a-0001-exon	agat-three_prime_utr-23564	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_604 331144..331614 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_604:328499..331614+
coding sequence from alignment at Scaffold_604:328499..331614+

spliced messenger RNA

>EsuBft964_9a-0001 ID=EsuBft964_9a-0001|Name=EsuBft964_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1462bp|location=Sequence derived from alignment at Scaffold_604:328499..331614+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTGAAGGGCGAGGGTAACAGCACAGGTTGAACACCTCCGCTGCACGCAC
CTCAGCAGGAATCTTGCAAGAGTATTACCGGCATTACCCCTTGAAGTGTT
TAAGTATATCAGCGGCGGACGCCTGCAAAGAAGCCGTGGTGACCCGTGCG
TACACATCTCCGCTTGCCTCAGGCAACAGCAGTACTACATACAGCAGTAG
TGATGACTGGTTCAGGATGTCGGGCGTTGGCGGTGCTCCTCACCTTGTAT
TCATCTCCATCTGGCGCCTTCCTAGCTCCAACGAAGGCAGCATTGGGTTG
TTTCCACCAACATCGATCGGCATCTAGCCCTACATGCTTGTCCATGACGG
CGCGGGATGAACTCCGCAGTGGCAGCATCAGCAGCAGTCGGCGAGGCTTC
TTGGAGGGGGGGGCTGTTGCCTTGCTAGCGTCGGTCGCAGCTATTGGGCT
GCCCGAACCATCTGTTGCGAAAGGGATCGACTTGTCAGAAGTAAAGGGCT
TGGACGTCAGCGAAGTAATGCACTTGGGCGCTGGCTCGTCGGGTGGGAAA
GCGACGAAGCCGCTGAGAGACTGCTTGCTGAACGTCGAAAGGGTGCGCAT
CTCGACCAAGCAGCTCGAGGACACCCTGACCAACGACGGCGCACCGCCGG
GCCTGACCGGGCTTGTCAAGGGGCTCATCAAGAACTACAAGCTGGACGAG
AGCCTCCAGCAGGGTGCCAAGTACATCGAATCTAGCGGGGACAGAAACAC
GGCCGCGTCCGCGGGGAGAGAGGCGCTGGAGTACCTGGCGCAGACGGCGG
AGTACTTTCCCGTTGAAGTGGATGACAGGACCGGGGCGCCCAAGAAACTC
AGCTCGGAAGCTCTCGAGTTCACAGTAAACGCCCTGATCGCAACCCGAGC
AAAACTCGATTTGTTCTTGTCCAAGGTCCCGTCGGACGCACTAGCAGAGG
CCAGGGCAGAGATTAAATCAGAGGGCGGCGACCAGTCATGAGGCCGGCCT
CATGCCCTTGTTGCTGTTGCGGCGGAATGCGGTCGGCGTCTGTAGTTCCT
CACACCGCGGCTTGTGGTACCCGGGAATCTGTCTGTAGAGCTGCCTTGTG
TTGGCTCCGTGTTTGAATGTTGTCAGATTTGCCGGTGGGATACGGATATG
TATGCGGGGCTAGACGCCGTCTGTGGACTGCCGAGGCCAAGCGTTAAGTC
GGAAGAAGTCAATCGTGTAGATCACGAGACCTTGTTGCTTTTTTCGTTTT
GTCTAGCCAGTGGAAAGCTCTTGCTTGGCGCTGATTCTAAACTTCGGACT
CGGTGAAAGTTTTCGTTTTGTAGGCATGCAACGGAAGAAAAACGTAGAAC
TGAAATATTTACAGTATTTTGTGCACGTTTCATATGACATCACGTCACAC
CTCTTCCGCGATGATTGTTGGCTTTGCATCCCAACCTTGTTACTGTGCTA
GACTGTGGAAGT

protein sequence of EsuBft964_9a-0001

>EsuBft964_9 ID=EsuBft964_9|Name=EsuBft964_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=262bp
MTGSGCRALAVLLTLYSSPSGAFLAPTKAALGCFHQHRSASSPTCLSMTA
RDELRSGSISSSRRGFLEGGAVALLASVAAIGLPEPSVAKGIDLSEVKGL
DVSEVMHLGAGSSGGKATKPLRDCLLNVERVRISTKQLEDTLTNDGAPPG
LTGLVKGLIKNYKLDESLQQGAKYIESSGDRNTAASAGREALEYLAQTAE
YFPVEVDDRTGAPKKLSSEALEFTVNALIATRAKLDLFLSKVPSDALAEA
RAEIKSEGGDQS

mRNA from alignment at Scaffold_604:328499..331614+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft964_9a-0001 ID=EsuBft964_9a-0001|Name=EsuBft964_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3116bp|location=Sequence derived from alignment at Scaffold_604:328499..331614+ (Ectocarpus subulatus male Bft15b)
TTTGAAGGGCGAGGGTAACAGCACAGGTTGAACACCTCCGCTGCACGCAC
CTCAGCAGGAATCTTGCAAGAGTATTACCGGCATTACCCCTTGAAGTGTT
TAAGTATATCAGCGGCGGACGCCTGCAAAGAAGCCGTGGTGACCCGTGCG
TACACATCTCCGCTTGCCTCAGGCAACAGCAGTACTACATACAGCAGTAG
TGATGACTGGTTCAGGATGTCGGGCGTTGGCGGTGCTCCTCACCTTGTAT
TCATCTCCATCTGGCGCCTTCCTAGCTCCAACGAAGGCAGCATTGGGTTG
TTTCCACCAACATCGATCGGCATCTAGCCCTACATGCTTGTCCATGACGG
CGCGGGATGAACTCCGCAGTGGCAGCATCAGCAGCAGTCGGCGAGGCTTC
TTGGAGGGGGGGGCTGTTGCCTTGCTAGCGTCGGTCGCAGCTATTGGGCT
GCCCGAACCATCTGTTGCGAAAGGGATCGACTTGTCAGAAGTAAAGGGCT
TGGACGTCAGCGAAGTAATGCACTTGGGCGCTGGCTCGTCGGGTGGGAAA
GCGACGAAGCCGCTGAGAGACTGCTTGCTGAACGTCGAAAGGGTGCGCAT
CTCGACCAAGCAGGTGACGAAGCACCGCAGGCTGTGCGGGAAGTGGTTTG
ATGACACGTATCATTCGATGTCGGCCCATTGGCACTCCCTCTTGCTTCTC
GAGCAACAGGACTAGATGAACGGACTTGCAAGGCACCACGAGTTTATCCC
TCTGCTGTTTCATGCACTTGCGCCATCGGTATGACTGCTGTGAAATGCAC
CCATTGGAGTAAGAATCCCGTAAGCCGCTCACGACTGCTATGAAACGCAC
CAATTGGAGTAAGAATCCCGCAAGCCGCCGCATGTGTAAAACAATGTGGA
TCGCGGCAAGCTCGAGAACCGAGCGGCGGTACAGGCAGTAGTAGTACAGA
GTAGACTCACAACCAGGCTGTCGCTAGGCAGAACTTATGCTGGCGGTGTG
TGTTTGCGTGCGAAGTCCTCCCGCTAAGATACACCCTCCATCGATACATC
CTTTTCGAGCGTAACGAAAATACCGTACCACACCAGGTATCTCAGCAAAT
CCGTTTGTTGCAGCGCAGCATGAATCCGGTGTACGTATGTGTGTACACCT
TGAAGTAACCCATATCTATTGACAAAAGGGACACAGACAATGGTACAACA
CGAGTTGTCTTACACCAGGGCAGCGGTGTACACAAAGGGCGGTGGAATTC
AGTCGGAACAGAGCCGCACCACACTCGCTCTATGCACCCCGTGGTGGTAT
ACTCCCACTTGTAGTACCAACTGTGAACCCCACATCAACGAGTAGTTAGC
TTTTTTTTTCGCCCCGTGCTATGTAGAAGGGGGCTTGTTGGCATGGAACA
TGCCATCACCGAACCCCTTCGTTTGGTATCCCCCCCCTCACCACCTTTTT
TCGTGGTCTTTGTATTTTGTTGCCTTCCCGCCATACAGCTCGAGGACACC
CTGACCAACGACGGCGCACCGCCGGGCCTGACCGGGCTTGTCAAGGGGCT
CATCAAGAACTACAAGCTGGACGAGAGCCTCCAGCAGGGTGCCAAGTACA
TCGAATCTAGCGGGGACAGAAACACGGCCGCGTCCGCGGGGAGAGAGGCG
CTGGAGTACCTGGCGCAGACGGCGGAGTACTTTCCCGTTGAAGTGGATGA
CAGGTATGTAGGCCAACATCTACACATCGGTTCGGCAGTCAGGCACTTTT
GTTTCAAGAGAACGGTGGCAAGGCGTTGGTGATGGCAGTACTTCTTGCAG
CACTGACGTGCATGTAGTAGGGAATTCTCCCTCATTCTAGTTCGCGGCCC
TACCGGAGTTCTAGATGCTTGCCATGCTACTGACCCAGCTCTGCCAAGGC
CGTCCAGAAGCAGCACCTGCAAGAAAAGCAACATCAGAGCAGCAGCATCA
TCATCAGCAAATATCCAGCGTGGGTGCTTGAGGAACTCGGATGTTCTGCT
GCAGTTCGCGGCCTTGAACGACACTTCCATTTTGCCGCAAAGTAGCGGCT
GGCGTGCAACAAGTACTATTTGGTTGCTAAGTGTGCGCGTGTGCGTGGGT
TGTGCGCGTTGCTTTGTCACTCCCCTTAGAGAGGGCTTTGTAATCGCGTT
CCTTGCCACCCCAGTGAGCCGAGGGTGAGTCGGAACGGGGTGAGCCGGAG
GGGGGAGTGCTCATGTTTTGCATGCCTAGTGGTTAAACCATTGACCATGC
GTCCTCGAGAGGACGGAGCATTGTTCCGACAGAACCGATCACCGATGGCC
AATTCGTTGCGAAGGAGGGGTGAGCGTTTTGTTTGGGGAGGAGGGCGGGA
AGTGGCACTGTTCGTTTCTATCCTGGCTGTTCCTTGTCTCCGTCCCCCCT
CCGTTCAACTGTTCCCTCTTGACATCTATCTGTACCTTCCCCCGCTTCCT
GCATCTCTTCTCGTCACCACACAACCCGTCAGGACCGGGGCGCCCAAGAA
ACTCAGCTCGGAAGCTCTCGAGTTCACAGTAAACGCCCTGATCGCAACCC
GAGCAAAACTCGATTTGTTCTTGTCCAAGGTCCCGTCGGACGCACTAGCA
GAGGCCAGGGCAGAGATTAAATCAGAGGGCGGCGACCAGTCATGAGGCCG
GCCTCATGCCCTTGTTGCTGTTGCGGCGGAATGCGGTCGGCGTCTGTAGT
TCCTCACACCGCGGCTTGTGGTACCCGGGAATCTGTCTGTAGAGCTGCCT
TGTGTTGGCTCCGTGTTTGAATGTTGTCAGATTTGCCGGTGGGATACGGA
TATGTATGCGGGGCTAGACGCCGTCTGTGGACTGCCGAGGCCAAGCGTTA
AGTCGGAAGAAGTCAATCGTGTAGATCACGAGACCTTGTTGCTTTTTTCG
TTTTGTCTAGCCAGTGGAAAGCTCTTGCTTGGCGCTGATTCTAAACTTCG
GACTCGGTGAAAGTTTTCGTTTTGTAGGCATGCAACGGAAGAAAAACGTA
GAACTGAAATATTTACAGTATTTTGTGCACGTTTCATATGACATCACGTC
ACACCTCTTCCGCGATGATTGTTGGCTTTGCATCCCAACCTTGTTACTGT
GCTAGACTGTGGAAGT

Coding sequence (CDS) from alignment at Scaffold_604:328499..331614+

>EsuBft964_9a-0001 ID=EsuBft964_9a-0001|Name=EsuBft964_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=789bp|location=Sequence derived from alignment at Scaffold_604:328499..331614+ (Ectocarpus subulatus male Bft15b)
ATGACTGGTTCAGGATGTCGGGCGTTGGCGGTGCTCCTCACCTTGTATTC
ATCTCCATCTGGCGCCTTCCTAGCTCCAACGAAGGCAGCATTGGGTTGTT
TCCACCAACATCGATCGGCATCTAGCCCTACATGCTTGTCCATGACGGCG
CGGGATGAACTCCGCAGTGGCAGCATCAGCAGCAGTCGGCGAGGCTTCTT
GGAGGGGGGGGCTGTTGCCTTGCTAGCGTCGGTCGCAGCTATTGGGCTGC
CCGAACCATCTGTTGCGAAAGGGATCGACTTGTCAGAAGTAAAGGGCTTG
GACGTCAGCGAAGTAATGCACTTGGGCGCTGGCTCGTCGGGTGGGAAAGC
GACGAAGCCGCTGAGAGACTGCTTGCTGAACGTCGAAAGGGTGCGCATCT
CGACCAAGCAGCTCGAGGACACCCTGACCAACGACGGCGCACCGCCGGGC
CTGACCGGGCTTGTCAAGGGGCTCATCAAGAACTACAAGCTGGACGAGAG
CCTCCAGCAGGGTGCCAAGTACATCGAATCTAGCGGGGACAGAAACACGG
CCGCGTCCGCGGGGAGAGAGGCGCTGGAGTACCTGGCGCAGACGGCGGAG
TACTTTCCCGTTGAAGTGGATGACAGGACCGGGGCGCCCAAGAAACTCAG
CTCGGAAGCTCTCGAGTTCACAGTAAACGCCCTGATCGCAACCCGAGCAA
AACTCGATTTGTTCTTGTCCAAGGTCCCGTCGGACGCACTAGCAGAGGCC
AGGGCAGAGATTAAATCAGAGGGCGGCGACCAGTCATGA