Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 159749.K0R908 |
| ProteomeId | EsuBft964_9 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SignalP-noTM |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SignalP-TM |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2836|Bacillariophyta |
| Length | 146 |
| Hectar predicted targeting category | chloroplast |
| Evalue | 2.26e-11 |
| EggNOG OGs | 2C1G4@1|root,2S3K1@2759|Eukaryota,2XCB1@2836|Bacillariophyta |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-06_007080.1 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft964_9a-0001 ID=EsuBft964_9a-0001|Name=EsuBft964_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1462bp|location=Sequence derived from alignment at Scaffold_604:328499..331614+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TTTGAAGGGCGAGGGTAACAGCACAGGTTGAACACCTCCGCTGCACGCAC
CTCAGCAGGAATCTTGCAAGAGTATTACCGGCATTACCCCTTGAAGTGTT
TAAGTATATCAGCGGCGGACGCCTGCAAAGAAGCCGTGGTGACCCGTGCG
TACACATCTCCGCTTGCCTCAGGCAACAGCAGTACTACATACAGCAGTAG
TGATGACTGGTTCAGGATGTCGGGCGTTGGCGGTGCTCCTCACCTTGTAT
TCATCTCCATCTGGCGCCTTCCTAGCTCCAACGAAGGCAGCATTGGGTTG
TTTCCACCAACATCGATCGGCATCTAGCCCTACATGCTTGTCCATGACGG
CGCGGGATGAACTCCGCAGTGGCAGCATCAGCAGCAGTCGGCGAGGCTTC
TTGGAGGGGGGGGCTGTTGCCTTGCTAGCGTCGGTCGCAGCTATTGGGCT
GCCCGAACCATCTGTTGCGAAAGGGATCGACTTGTCAGAAGTAAAGGGCT
TGGACGTCAGCGAAGTAATGCACTTGGGCGCTGGCTCGTCGGGTGGGAAA
GCGACGAAGCCGCTGAGAGACTGCTTGCTGAACGTCGAAAGGGTGCGCAT
CTCGACCAAGCAGCTCGAGGACACCCTGACCAACGACGGCGCACCGCCGG
GCCTGACCGGGCTTGTCAAGGGGCTCATCAAGAACTACAAGCTGGACGAG
AGCCTCCAGCAGGGTGCCAAGTACATCGAATCTAGCGGGGACAGAAACAC
GGCCGCGTCCGCGGGGAGAGAGGCGCTGGAGTACCTGGCGCAGACGGCGG
AGTACTTTCCCGTTGAAGTGGATGACAGGACCGGGGCGCCCAAGAAACTC
AGCTCGGAAGCTCTCGAGTTCACAGTAAACGCCCTGATCGCAACCCGAGC
AAAACTCGATTTGTTCTTGTCCAAGGTCCCGTCGGACGCACTAGCAGAGG
CCAGGGCAGAGATTAAATCAGAGGGCGGCGACCAGTCATGAGGCCGGCCT
CATGCCCTTGTTGCTGTTGCGGCGGAATGCGGTCGGCGTCTGTAGTTCCT
CACACCGCGGCTTGTGGTACCCGGGAATCTGTCTGTAGAGCTGCCTTGTG
TTGGCTCCGTGTTTGAATGTTGTCAGATTTGCCGGTGGGATACGGATATG
TATGCGGGGCTAGACGCCGTCTGTGGACTGCCGAGGCCAAGCGTTAAGTC
GGAAGAAGTCAATCGTGTAGATCACGAGACCTTGTTGCTTTTTTCGTTTT
GTCTAGCCAGTGGAAAGCTCTTGCTTGGCGCTGATTCTAAACTTCGGACT
CGGTGAAAGTTTTCGTTTTGTAGGCATGCAACGGAAGAAAAACGTAGAAC
TGAAATATTTACAGTATTTTGTGCACGTTTCATATGACATCACGTCACAC
CTCTTCCGCGATGATTGTTGGCTTTGCATCCCAACCTTGTTACTGTGCTA
GACTGTGGAAGT back to topprotein sequence of EsuBft964_9a-0001 >EsuBft964_9 ID=EsuBft964_9|Name=EsuBft964_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=262bp
MTGSGCRALAVLLTLYSSPSGAFLAPTKAALGCFHQHRSASSPTCLSMTA
RDELRSGSISSSRRGFLEGGAVALLASVAAIGLPEPSVAKGIDLSEVKGL
DVSEVMHLGAGSSGGKATKPLRDCLLNVERVRISTKQLEDTLTNDGAPPG
LTGLVKGLIKNYKLDESLQQGAKYIESSGDRNTAASAGREALEYLAQTAE
YFPVEVDDRTGAPKKLSSEALEFTVNALIATRAKLDLFLSKVPSDALAEA
RAEIKSEGGDQS back to topmRNA from alignment at Scaffold_604:328499..331614+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft964_9a-0001 ID=EsuBft964_9a-0001|Name=EsuBft964_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3116bp|location=Sequence derived from alignment at Scaffold_604:328499..331614+ (Ectocarpus subulatus male Bft15b)
TTTGAAGGGCGAGGGTAACAGCACAGGTTGAACACCTCCGCTGCACGCAC
CTCAGCAGGAATCTTGCAAGAGTATTACCGGCATTACCCCTTGAAGTGTT
TAAGTATATCAGCGGCGGACGCCTGCAAAGAAGCCGTGGTGACCCGTGCG
TACACATCTCCGCTTGCCTCAGGCAACAGCAGTACTACATACAGCAGTAG
TGATGACTGGTTCAGGATGTCGGGCGTTGGCGGTGCTCCTCACCTTGTAT
TCATCTCCATCTGGCGCCTTCCTAGCTCCAACGAAGGCAGCATTGGGTTG
TTTCCACCAACATCGATCGGCATCTAGCCCTACATGCTTGTCCATGACGG
CGCGGGATGAACTCCGCAGTGGCAGCATCAGCAGCAGTCGGCGAGGCTTC
TTGGAGGGGGGGGCTGTTGCCTTGCTAGCGTCGGTCGCAGCTATTGGGCT
GCCCGAACCATCTGTTGCGAAAGGGATCGACTTGTCAGAAGTAAAGGGCT
TGGACGTCAGCGAAGTAATGCACTTGGGCGCTGGCTCGTCGGGTGGGAAA
GCGACGAAGCCGCTGAGAGACTGCTTGCTGAACGTCGAAAGGGTGCGCAT
CTCGACCAAGCAGGTGACGAAGCACCGCAGGCTGTGCGGGAAGTGGTTTG
ATGACACGTATCATTCGATGTCGGCCCATTGGCACTCCCTCTTGCTTCTC
GAGCAACAGGACTAGATGAACGGACTTGCAAGGCACCACGAGTTTATCCC
TCTGCTGTTTCATGCACTTGCGCCATCGGTATGACTGCTGTGAAATGCAC
CCATTGGAGTAAGAATCCCGTAAGCCGCTCACGACTGCTATGAAACGCAC
CAATTGGAGTAAGAATCCCGCAAGCCGCCGCATGTGTAAAACAATGTGGA
TCGCGGCAAGCTCGAGAACCGAGCGGCGGTACAGGCAGTAGTAGTACAGA
GTAGACTCACAACCAGGCTGTCGCTAGGCAGAACTTATGCTGGCGGTGTG
TGTTTGCGTGCGAAGTCCTCCCGCTAAGATACACCCTCCATCGATACATC
CTTTTCGAGCGTAACGAAAATACCGTACCACACCAGGTATCTCAGCAAAT
CCGTTTGTTGCAGCGCAGCATGAATCCGGTGTACGTATGTGTGTACACCT
TGAAGTAACCCATATCTATTGACAAAAGGGACACAGACAATGGTACAACA
CGAGTTGTCTTACACCAGGGCAGCGGTGTACACAAAGGGCGGTGGAATTC
AGTCGGAACAGAGCCGCACCACACTCGCTCTATGCACCCCGTGGTGGTAT
ACTCCCACTTGTAGTACCAACTGTGAACCCCACATCAACGAGTAGTTAGC
TTTTTTTTTCGCCCCGTGCTATGTAGAAGGGGGCTTGTTGGCATGGAACA
TGCCATCACCGAACCCCTTCGTTTGGTATCCCCCCCCTCACCACCTTTTT
TCGTGGTCTTTGTATTTTGTTGCCTTCCCGCCATACAGCTCGAGGACACC
CTGACCAACGACGGCGCACCGCCGGGCCTGACCGGGCTTGTCAAGGGGCT
CATCAAGAACTACAAGCTGGACGAGAGCCTCCAGCAGGGTGCCAAGTACA
TCGAATCTAGCGGGGACAGAAACACGGCCGCGTCCGCGGGGAGAGAGGCG
CTGGAGTACCTGGCGCAGACGGCGGAGTACTTTCCCGTTGAAGTGGATGA
CAGGTATGTAGGCCAACATCTACACATCGGTTCGGCAGTCAGGCACTTTT
GTTTCAAGAGAACGGTGGCAAGGCGTTGGTGATGGCAGTACTTCTTGCAG
CACTGACGTGCATGTAGTAGGGAATTCTCCCTCATTCTAGTTCGCGGCCC
TACCGGAGTTCTAGATGCTTGCCATGCTACTGACCCAGCTCTGCCAAGGC
CGTCCAGAAGCAGCACCTGCAAGAAAAGCAACATCAGAGCAGCAGCATCA
TCATCAGCAAATATCCAGCGTGGGTGCTTGAGGAACTCGGATGTTCTGCT
GCAGTTCGCGGCCTTGAACGACACTTCCATTTTGCCGCAAAGTAGCGGCT
GGCGTGCAACAAGTACTATTTGGTTGCTAAGTGTGCGCGTGTGCGTGGGT
TGTGCGCGTTGCTTTGTCACTCCCCTTAGAGAGGGCTTTGTAATCGCGTT
CCTTGCCACCCCAGTGAGCCGAGGGTGAGTCGGAACGGGGTGAGCCGGAG
GGGGGAGTGCTCATGTTTTGCATGCCTAGTGGTTAAACCATTGACCATGC
GTCCTCGAGAGGACGGAGCATTGTTCCGACAGAACCGATCACCGATGGCC
AATTCGTTGCGAAGGAGGGGTGAGCGTTTTGTTTGGGGAGGAGGGCGGGA
AGTGGCACTGTTCGTTTCTATCCTGGCTGTTCCTTGTCTCCGTCCCCCCT
CCGTTCAACTGTTCCCTCTTGACATCTATCTGTACCTTCCCCCGCTTCCT
GCATCTCTTCTCGTCACCACACAACCCGTCAGGACCGGGGCGCCCAAGAA
ACTCAGCTCGGAAGCTCTCGAGTTCACAGTAAACGCCCTGATCGCAACCC
GAGCAAAACTCGATTTGTTCTTGTCCAAGGTCCCGTCGGACGCACTAGCA
GAGGCCAGGGCAGAGATTAAATCAGAGGGCGGCGACCAGTCATGAGGCCG
GCCTCATGCCCTTGTTGCTGTTGCGGCGGAATGCGGTCGGCGTCTGTAGT
TCCTCACACCGCGGCTTGTGGTACCCGGGAATCTGTCTGTAGAGCTGCCT
TGTGTTGGCTCCGTGTTTGAATGTTGTCAGATTTGCCGGTGGGATACGGA
TATGTATGCGGGGCTAGACGCCGTCTGTGGACTGCCGAGGCCAAGCGTTA
AGTCGGAAGAAGTCAATCGTGTAGATCACGAGACCTTGTTGCTTTTTTCG
TTTTGTCTAGCCAGTGGAAAGCTCTTGCTTGGCGCTGATTCTAAACTTCG
GACTCGGTGAAAGTTTTCGTTTTGTAGGCATGCAACGGAAGAAAAACGTA
GAACTGAAATATTTACAGTATTTTGTGCACGTTTCATATGACATCACGTC
ACACCTCTTCCGCGATGATTGTTGGCTTTGCATCCCAACCTTGTTACTGT
GCTAGACTGTGGAAGT back to topCoding sequence (CDS) from alignment at Scaffold_604:328499..331614+ >EsuBft964_9a-0001 ID=EsuBft964_9a-0001|Name=EsuBft964_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=789bp|location=Sequence derived from alignment at Scaffold_604:328499..331614+ (Ectocarpus subulatus male Bft15b)
ATGACTGGTTCAGGATGTCGGGCGTTGGCGGTGCTCCTCACCTTGTATTC
ATCTCCATCTGGCGCCTTCCTAGCTCCAACGAAGGCAGCATTGGGTTGTT
TCCACCAACATCGATCGGCATCTAGCCCTACATGCTTGTCCATGACGGCG
CGGGATGAACTCCGCAGTGGCAGCATCAGCAGCAGTCGGCGAGGCTTCTT
GGAGGGGGGGGCTGTTGCCTTGCTAGCGTCGGTCGCAGCTATTGGGCTGC
CCGAACCATCTGTTGCGAAAGGGATCGACTTGTCAGAAGTAAAGGGCTTG
GACGTCAGCGAAGTAATGCACTTGGGCGCTGGCTCGTCGGGTGGGAAAGC
GACGAAGCCGCTGAGAGACTGCTTGCTGAACGTCGAAAGGGTGCGCATCT
CGACCAAGCAGCTCGAGGACACCCTGACCAACGACGGCGCACCGCCGGGC
CTGACCGGGCTTGTCAAGGGGCTCATCAAGAACTACAAGCTGGACGAGAG
CCTCCAGCAGGGTGCCAAGTACATCGAATCTAGCGGGGACAGAAACACGG
CCGCGTCCGCGGGGAGAGAGGCGCTGGAGTACCTGGCGCAGACGGCGGAG
TACTTTCCCGTTGAAGTGGATGACAGGACCGGGGCGCCCAAGAAACTCAG
CTCGGAAGCTCTCGAGTTCACAGTAAACGCCCTGATCGCAACCCGAGCAA
AACTCGATTTGTTCTTGTCCAAGGTCCCGTCGGACGCACTAGCAGAGGCC
AGGGCAGAGATTAAATCAGAGGGCGGCGACCAGTCATGA back to top
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