Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FI08 |
| ProteomeId | EsuBft1311_11 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 63 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.64e-49 |
| EggNOG OGs | 2DCSR@1|root,2S5KN@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1311_11a-0001 ID=EsuBft1311_11a-0001|Name=EsuBft1311_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=638bp|location=Sequence derived from alignment at Scaffold_589:179327..180150+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGACACGTGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGGAAACCGC
GGCGCTGACAGCTTCTGATCGGCGGGTACTGATCACTCGGTGGATTGGAG
CGGCCATGGCAAGACTCAACAGCCAACAGGCGTTCCGATTCCGCCTTTTC
GAAAAGTGCGGGATGGGCATGACTGTGGACGGCTCAGGCGATGATCGGAT
CACCTTGGAGGGTTTGGACAAGCCGTATACCTTTGCAAACGATGAAGACT
GTAGCGAGGACGAAGGAGGTTTGGAGAACGGCAGCGATGAGCGTGAGGGG
CGGGGGAAGGAAGGCGGTGGACGTGAGACGGTCGTGGAGGGCGCTGATTC
CAGCGATGATGAAGACGACGGCGGCACGTCTCAAACGCAGACCGATGAGC
TAGCTCTTCTCGATGATGACGACGACAGCATGGACCCACAATACCCGGAG
GACGAGACACAAGGAATGTAGATCCCGACAGGCTATCGCATTCAAGAAGT
TAAACCCGTTGCTCTTGACAGATTGCTTTTGCGACGTGGAGTGCTCGTTA
GGCGGGGATGGGGTGGTTTGGAGGTTTGATCATTCAGCAATCTCAGCAGG
ACACTTGCCACCTGTACGACTACTCTGTGCAGCTGGAG back to topprotein sequence of EsuBft1311_11a-0001 >EsuBft1311_11 ID=EsuBft1311_11|Name=EsuBft1311_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=156bp
MDTWLEQSDNLERWETAALTASDRRVLITRWIGAAMARLNSQQAFRFRLF
EKCGMGMTVDGSGDDRITLEGLDKPYTFANDEDCSEDEGGLENGSDEREG
RGKEGGGRETVVEGADSSDDEDDGGTSQTQTDELALLDDDDDSMDPQYPE
DETQGM back to topmRNA from alignment at Scaffold_589:179327..180150+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1311_11a-0001 ID=EsuBft1311_11a-0001|Name=EsuBft1311_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=824bp|location=Sequence derived from alignment at Scaffold_589:179327..180150+ (Ectocarpus subulatus male Bft15b)
ATGGACACGTGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGGAAACCGC
GGCGCTGACAGCTTCTGATCGGCGGGTACTGATCACTCGGTGGATTGGAG
CGGCCATGGCAAGACTCAACAGCCAACAGGCGTTCCGATTCCGCCTTTTC
GAAAAGTGCGGGATGGGCATGACTGTGGACGGCTCAGGCGATGATCGGAT
CACCTTGGAGGGTTTGGACAAGCCGTATACCTTTGCAAACGATGAAGACT
GTAGCGAGGACGAAGGAGGTTTGGAGAACGGCAGCGATGAGCGTGAGGGG
CGGGGGAAGGAAGGCGGTGGACGTGAGACGGTCGTGGAGGGCGCTGATTC
CAGCGATGATGAAGACGACGGCGGTATATGCACTAGACCCAATCTTTGTC
ATTTCCTTGTCGATTACGATGTCCATGTTGATATTTGCTTGTATTTTGCT
GATGTGCTGTTCCGCGTTCACGACTACGAGCAAACATGATGGGTTGATAC
GTTGAGTTTCGGCCGTGACACCGTAATTCTTGTGGTGTTTCACGGTGCCC
CGTTCGCAGGCACGTCTCAAACGCAGACCGATGAGCTAGCTCTTCTCGAT
GATGACGACGACAGCATGGACCCACAATACCCGGAGGACGAGACACAAGG
AATGTAGATCCCGACAGGCTATCGCATTCAAGAAGTTAAACCCGTTGCTC
TTGACAGATTGCTTTTGCGACGTGGAGTGCTCGTTAGGCGGGGATGGGGT
GGTTTGGAGGTTTGATCATTCAGCAATCTCAGCAGGACACTTGCCACCTG
TACGACTACTCTGTGCAGCTGGAG back to topCoding sequence (CDS) from alignment at Scaffold_589:179327..180150+ >EsuBft1311_11a-0001 ID=EsuBft1311_11a-0001|Name=EsuBft1311_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=471bp|location=Sequence derived from alignment at Scaffold_589:179327..180150+ (Ectocarpus subulatus male Bft15b)
ATGGACACGTGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGGAAACCGC
GGCGCTGACAGCTTCTGATCGGCGGGTACTGATCACTCGGTGGATTGGAG
CGGCCATGGCAAGACTCAACAGCCAACAGGCGTTCCGATTCCGCCTTTTC
GAAAAGTGCGGGATGGGCATGACTGTGGACGGCTCAGGCGATGATCGGAT
CACCTTGGAGGGTTTGGACAAGCCGTATACCTTTGCAAACGATGAAGACT
GTAGCGAGGACGAAGGAGGTTTGGAGAACGGCAGCGATGAGCGTGAGGGG
CGGGGGAAGGAAGGCGGTGGACGTGAGACGGTCGTGGAGGGCGCTGATTC
CAGCGATGATGAAGACGACGGCGGCACGTCTCAAACGCAGACCGATGAGC
TAGCTCTTCTCGATGATGACGACGACAGCATGGACCCACAATACCCGGAG
GACGAGACACAAGGAATGTAG back to top
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