EsuBft1311_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1311_11a-0001
Unique NameEsuBft1311_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_589contigScaffold_589:179327..180150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FI08
ProteomeIdEsuBft1311_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length63
Hectar predicted targeting categoryother localisation
Evalue3.64e-49
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_11aEsuBft1311_11aEctocarpus subulatus male Bft15bgeneScaffold_589 179327..180150 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_11a-0001-exonEsuBft1311_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_589 179327..179699 +
EsuBft1311_11a-0001-exonagat-exon-44674Ectocarpus subulatus male Bft15bexonScaffold_589 179886..180150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_11a-0001-cdsEsuBft1311_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_589 179327..179699 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_11a-0001-exonagat-three_prime_utr-2897Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_589 179984..180150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1311_11a-0001EsuBft1311_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_589 179327..179983 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1311_11a-0001 ID=EsuBft1311_11a-0001|Name=EsuBft1311_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=638bp|location=Sequence derived from alignment at Scaffold_589:179327..180150+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACACGTGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGGAAACCGC
GGCGCTGACAGCTTCTGATCGGCGGGTACTGATCACTCGGTGGATTGGAG
CGGCCATGGCAAGACTCAACAGCCAACAGGCGTTCCGATTCCGCCTTTTC
GAAAAGTGCGGGATGGGCATGACTGTGGACGGCTCAGGCGATGATCGGAT
CACCTTGGAGGGTTTGGACAAGCCGTATACCTTTGCAAACGATGAAGACT
GTAGCGAGGACGAAGGAGGTTTGGAGAACGGCAGCGATGAGCGTGAGGGG
CGGGGGAAGGAAGGCGGTGGACGTGAGACGGTCGTGGAGGGCGCTGATTC
CAGCGATGATGAAGACGACGGCGGCACGTCTCAAACGCAGACCGATGAGC
TAGCTCTTCTCGATGATGACGACGACAGCATGGACCCACAATACCCGGAG
GACGAGACACAAGGAATGTAGATCCCGACAGGCTATCGCATTCAAGAAGT
TAAACCCGTTGCTCTTGACAGATTGCTTTTGCGACGTGGAGTGCTCGTTA
GGCGGGGATGGGGTGGTTTGGAGGTTTGATCATTCAGCAATCTCAGCAGG
ACACTTGCCACCTGTACGACTACTCTGTGCAGCTGGAG
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protein sequence of EsuBft1311_11a-0001

>EsuBft1311_11 ID=EsuBft1311_11|Name=EsuBft1311_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=156bp
MDTWLEQSDNLERWETAALTASDRRVLITRWIGAAMARLNSQQAFRFRLF
EKCGMGMTVDGSGDDRITLEGLDKPYTFANDEDCSEDEGGLENGSDEREG
RGKEGGGRETVVEGADSSDDEDDGGTSQTQTDELALLDDDDDSMDPQYPE
DETQGM
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mRNA from alignment at Scaffold_589:179327..180150+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1311_11a-0001 ID=EsuBft1311_11a-0001|Name=EsuBft1311_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=824bp|location=Sequence derived from alignment at Scaffold_589:179327..180150+ (Ectocarpus subulatus male Bft15b)
ATGGACACGTGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGGAAACCGC
GGCGCTGACAGCTTCTGATCGGCGGGTACTGATCACTCGGTGGATTGGAG
CGGCCATGGCAAGACTCAACAGCCAACAGGCGTTCCGATTCCGCCTTTTC
GAAAAGTGCGGGATGGGCATGACTGTGGACGGCTCAGGCGATGATCGGAT
CACCTTGGAGGGTTTGGACAAGCCGTATACCTTTGCAAACGATGAAGACT
GTAGCGAGGACGAAGGAGGTTTGGAGAACGGCAGCGATGAGCGTGAGGGG
CGGGGGAAGGAAGGCGGTGGACGTGAGACGGTCGTGGAGGGCGCTGATTC
CAGCGATGATGAAGACGACGGCGGTATATGCACTAGACCCAATCTTTGTC
ATTTCCTTGTCGATTACGATGTCCATGTTGATATTTGCTTGTATTTTGCT
GATGTGCTGTTCCGCGTTCACGACTACGAGCAAACATGATGGGTTGATAC
GTTGAGTTTCGGCCGTGACACCGTAATTCTTGTGGTGTTTCACGGTGCCC
CGTTCGCAGGCACGTCTCAAACGCAGACCGATGAGCTAGCTCTTCTCGAT
GATGACGACGACAGCATGGACCCACAATACCCGGAGGACGAGACACAAGG
AATGTAGATCCCGACAGGCTATCGCATTCAAGAAGTTAAACCCGTTGCTC
TTGACAGATTGCTTTTGCGACGTGGAGTGCTCGTTAGGCGGGGATGGGGT
GGTTTGGAGGTTTGATCATTCAGCAATCTCAGCAGGACACTTGCCACCTG
TACGACTACTCTGTGCAGCTGGAG
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Coding sequence (CDS) from alignment at Scaffold_589:179327..180150+

>EsuBft1311_11a-0001 ID=EsuBft1311_11a-0001|Name=EsuBft1311_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=471bp|location=Sequence derived from alignment at Scaffold_589:179327..180150+ (Ectocarpus subulatus male Bft15b)
ATGGACACGTGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGGAAACCGC
GGCGCTGACAGCTTCTGATCGGCGGGTACTGATCACTCGGTGGATTGGAG
CGGCCATGGCAAGACTCAACAGCCAACAGGCGTTCCGATTCCGCCTTTTC
GAAAAGTGCGGGATGGGCATGACTGTGGACGGCTCAGGCGATGATCGGAT
CACCTTGGAGGGTTTGGACAAGCCGTATACCTTTGCAAACGATGAAGACT
GTAGCGAGGACGAAGGAGGTTTGGAGAACGGCAGCGATGAGCGTGAGGGG
CGGGGGAAGGAAGGCGGTGGACGTGAGACGGTCGTGGAGGGCGCTGATTC
CAGCGATGATGAAGACGACGGCGGCACGTCTCAAACGCAGACCGATGAGC
TAGCTCTTCTCGATGATGACGACGACAGCATGGACCCACAATACCCGGAG
GACGAGACACAAGGAATGTAG
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