EsuBft555_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft555_10a-0001
Unique Name	EsuBft555_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_581	contig	Scaffold_581:101573..102476 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LEE7
ProteomeId	EsuBft555_10
Protein domains	PTHR24198
Protein domains	IPR002110
Protein domains	IPR020683
Owner	apollo_admin@sb-roscoff.fr
Note	ankyrin repeat protein fpv162 os:fowlpox virus (strain nvsl) gn:fpv162 pe:3 sv:1 [Automatic annotation]
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	862
Hectar predicted targeting category	other localisation
Evalue	3.28e-41
EggNOG OGs	COG0666@1\|root,KOG4177@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	spectrin binding
COG category	I

Cross References

External references for this mRNA


Database	Accession
GO	0051092
GO	0031227
GO	0005515
GO	0005856
GO	0002009
GO	0016020
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft555_10a	EsuBft555_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_581 101573..102476 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_10a-0001-exon	EsuBft555_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_581 101573..102004 +
EsuBft555_10a-0001-exon	agat-exon-37852	Ectocarpus subulatus male Bft15b	exon	Scaffold_581 102047..102476 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_10a-0001-exon	agat-five_prime_utr-11624	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_581 101573..101594 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_10a-0001-cds	EsuBft555_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_581 101595..102004 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_10a-0001-exon	agat-three_prime_utr-18310	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_581 102201..102476 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_10a-0001	EsuBft555_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_581 101595..102200 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_581:101573..102476+
coding sequence from alignment at Scaffold_581:101573..102476+

spliced messenger RNA

>EsuBft555_10a-0001 ID=EsuBft555_10a-0001|Name=EsuBft555_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=862bp|location=Sequence derived from alignment at Scaffold_581:101573..102476+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TAACTTGACACAGAGTAACGAGATGGGCCATACCCCTCTGCACCTTGCCG
CCGGCTTGGGCTGTGACGATATGATGCCCCTGATTCTTCAACAAGGGGCT
GTCGTGGATGCGCTGGATAACCAGCGTCGGACTCCCTTGCACCTCGCAGC
AACCGTAGGTTCTTGTCCTGCGGTGGAAGTGCTATTGGCTGCCGGAGCGG
ACCTGAGCCTCCGCTCCGGTGATAACAACGAATCAGCGTTGGAAACGGCT
GCCATTAATGGGGACGTGGATGTAGTGCGAGCAATGGTGCGGCACGGGGT
GGACGTTAATGCTCGCGACTCTCAAGGCCTCACTGCGCTACACGCGGTCG
CTGAGAGCAATCAGGCAGGCGCGATCGATGCGCTTGTCGAAGCAGGAGCG
CACGTCAACGCTCGGGGGAGGGGGTGGAAAGGAGGCTGCATTGGCCCTGC
TGAGGAATGGTGCGGACGTTCACGAGCTGGCCAGTTATCACCGCACTGCC
CTCCATATTGCGGCCAAAAGAGGACACACTACCGTTGTCAATGCCCTTCT
GGACGCTGGCGCGAGGCTTCATCTCCGCACAAATAAGTACGACAGCGGAG
ATACGCCGCTAGACTTGGCCGCTAAGAAGGGACAGTCGCCATCGTTCAAC
GGCTAATCCGGCACGGTGCCAGGTTGAATGCCAGAGACGCAGATGGGTTG
ACTACCTTGCACAAGACTGCCTCCGAAAACGAGCCTGATGTGATCGATAC
GCTAGTAGCAGCAGGGGCTGAAGTGGATGCCGTTTATCCGGAGAGCGGCT
TTACGCCCCTCCACGTAGCGTCCATCGACGAGTGCTCCGAGGCCGCCCGC
TCTCTTTGGAAG

protein sequence of EsuBft555_10a-0001

>EsuBft555_10 ID=EsuBft555_10|Name=EsuBft555_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=187bp
MGHTPLHLAAGLGCDDMMPLILQQGAVVDALDNQRRTPLHLAATVGSCPA
VEVLLAAGADLSLRSGDNNESALETAAINGDVDVVRAMVRHGVDVNARDS
QGLTALHAVAESNQAGAIDALVEAGAHVNARGRGWKGGCIGPAEEWCGRS
RAGQLSPHCPPYCGQKRTHYRCQCPSGRWREASSPHK

mRNA from alignment at Scaffold_581:101573..102476+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft555_10a-0001 ID=EsuBft555_10a-0001|Name=EsuBft555_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=904bp|location=Sequence derived from alignment at Scaffold_581:101573..102476+ (Ectocarpus subulatus male Bft15b)
TAACTTGACACAGAGTAACGAGATGGGCCATACCCCTCTGCACCTTGCCG
CCGGCTTGGGCTGTGACGATATGATGCCCCTGATTCTTCAACAAGGGGCT
GTCGTGGATGCGCTGGATAACCAGCGTCGGACTCCCTTGCACCTCGCAGC
AACCGTAGGTTCTTGTCCTGCGGTGGAAGTGCTATTGGCTGCCGGAGCGG
ACCTGAGCCTCCGCTCCGGTGATAACAACGAATCAGCGTTGGAAACGGCT
GCCATTAATGGGGACGTGGATGTAGTGCGAGCAATGGTGCGGCACGGGGT
GGACGTTAATGCTCGCGACTCTCAAGGCCTCACTGCGCTACACGCGGTCG
CTGAGAGCAATCAGGCAGGCGCGATCGATGCGCTTGTCGAAGCAGGAGCG
CACGTCAACGCTCGGGGGAGGGGGTGGAAAGGGTAAGACACCGCTCTATG
TGGCAAGTGCAAGCGGTTCACTAGAGGCTGCATTGGCCCTGCTGAGGAAT
GGTGCGGACGTTCACGAGCTGGCCAGTTATCACCGCACTGCCCTCCATAT
TGCGGCCAAAAGAGGACACACTACCGTTGTCAATGCCCTTCTGGACGCTG
GCGCGAGGCTTCATCTCCGCACAAATAAGTACGACAGCGGAGATACGCCG
CTAGACTTGGCCGCTAAGAAGGGACAGTCGCCATCGTTCAACGGCTAATC
CGGCACGGTGCCAGGTTGAATGCCAGAGACGCAGATGGGTTGACTACCTT
GCACAAGACTGCCTCCGAAAACGAGCCTGATGTGATCGATACGCTAGTAG
CAGCAGGGGCTGAAGTGGATGCCGTTTATCCGGAGAGCGGCTTTACGCCC
CTCCACGTAGCGTCCATCGACGAGTGCTCCGAGGCCGCCCGCTCTCTTTG
GAAG

Coding sequence (CDS) from alignment at Scaffold_581:101573..102476+

>EsuBft555_10a-0001 ID=EsuBft555_10a-0001|Name=EsuBft555_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=564bp|location=Sequence derived from alignment at Scaffold_581:101573..102476+ (Ectocarpus subulatus male Bft15b)
ATGGGCCATACCCCTCTGCACCTTGCCGCCGGCTTGGGCTGTGACGATAT
GATGCCCCTGATTCTTCAACAAGGGGCTGTCGTGGATGCGCTGGATAACC
AGCGTCGGACTCCCTTGCACCTCGCAGCAACCGTAGGTTCTTGTCCTGCG
GTGGAAGTGCTATTGGCTGCCGGAGCGGACCTGAGCCTCCGCTCCGGTGA
TAACAACGAATCAGCGTTGGAAACGGCTGCCATTAATGGGGACGTGGATG
TAGTGCGAGCAATGGTGCGGCACGGGGTGGACGTTAATGCTCGCGACTCT
CAAGGCCTCACTGCGCTACACGCGGTCGCTGAGAGCAATCAGGCAGGCGC
GATCGATGCGCTTGTCGAAGCAGGAGCGCACGTCAACGCTCGGGGGAGGG
GGTGGAAAGGAGGCTGCATTGGCCCTGCTGAGGAATGGTGCGGACGTTCA
CGAGCTGGCCAGTTATCACCGCACTGCCCTCCATATTGCGGCCAAAAGAG
GACACACTACCGTTGTCAATGCCCTTCTGGACGCTGGCGCGAGGCTTCAT
CTCCGCACAAATAA