Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LEE7 |
| ProteomeId | EsuBft555_10 |
| Protein domains | PTHR24198 |
| Protein domains | IPR002110 |
| Protein domains | IPR020683 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | ankyrin repeat protein fpv162 os:fowlpox virus (strain nvsl) gn:fpv162 pe:3 sv:1 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 862 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.28e-41 |
| EggNOG OGs | COG0666@1|root,KOG4177@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | spectrin binding |
| COG category | I |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0051092 |
| GO | 0031227 |
| GO | 0005515 |
| GO | 0005856 |
| GO | 0002009 |
| GO | 0016020 |
| GO | 0016740 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft555_10a-0001 ID=EsuBft555_10a-0001|Name=EsuBft555_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=862bp|location=Sequence derived from alignment at Scaffold_581:101573..102476+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TAACTTGACACAGAGTAACGAGATGGGCCATACCCCTCTGCACCTTGCCG
CCGGCTTGGGCTGTGACGATATGATGCCCCTGATTCTTCAACAAGGGGCT
GTCGTGGATGCGCTGGATAACCAGCGTCGGACTCCCTTGCACCTCGCAGC
AACCGTAGGTTCTTGTCCTGCGGTGGAAGTGCTATTGGCTGCCGGAGCGG
ACCTGAGCCTCCGCTCCGGTGATAACAACGAATCAGCGTTGGAAACGGCT
GCCATTAATGGGGACGTGGATGTAGTGCGAGCAATGGTGCGGCACGGGGT
GGACGTTAATGCTCGCGACTCTCAAGGCCTCACTGCGCTACACGCGGTCG
CTGAGAGCAATCAGGCAGGCGCGATCGATGCGCTTGTCGAAGCAGGAGCG
CACGTCAACGCTCGGGGGAGGGGGTGGAAAGGAGGCTGCATTGGCCCTGC
TGAGGAATGGTGCGGACGTTCACGAGCTGGCCAGTTATCACCGCACTGCC
CTCCATATTGCGGCCAAAAGAGGACACACTACCGTTGTCAATGCCCTTCT
GGACGCTGGCGCGAGGCTTCATCTCCGCACAAATAAGTACGACAGCGGAG
ATACGCCGCTAGACTTGGCCGCTAAGAAGGGACAGTCGCCATCGTTCAAC
GGCTAATCCGGCACGGTGCCAGGTTGAATGCCAGAGACGCAGATGGGTTG
ACTACCTTGCACAAGACTGCCTCCGAAAACGAGCCTGATGTGATCGATAC
GCTAGTAGCAGCAGGGGCTGAAGTGGATGCCGTTTATCCGGAGAGCGGCT
TTACGCCCCTCCACGTAGCGTCCATCGACGAGTGCTCCGAGGCCGCCCGC
TCTCTTTGGAAG back to topprotein sequence of EsuBft555_10a-0001 >EsuBft555_10 ID=EsuBft555_10|Name=EsuBft555_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=187bp
MGHTPLHLAAGLGCDDMMPLILQQGAVVDALDNQRRTPLHLAATVGSCPA
VEVLLAAGADLSLRSGDNNESALETAAINGDVDVVRAMVRHGVDVNARDS
QGLTALHAVAESNQAGAIDALVEAGAHVNARGRGWKGGCIGPAEEWCGRS
RAGQLSPHCPPYCGQKRTHYRCQCPSGRWREASSPHK back to topmRNA from alignment at Scaffold_581:101573..102476+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft555_10a-0001 ID=EsuBft555_10a-0001|Name=EsuBft555_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=904bp|location=Sequence derived from alignment at Scaffold_581:101573..102476+ (Ectocarpus subulatus male Bft15b)
TAACTTGACACAGAGTAACGAGATGGGCCATACCCCTCTGCACCTTGCCG
CCGGCTTGGGCTGTGACGATATGATGCCCCTGATTCTTCAACAAGGGGCT
GTCGTGGATGCGCTGGATAACCAGCGTCGGACTCCCTTGCACCTCGCAGC
AACCGTAGGTTCTTGTCCTGCGGTGGAAGTGCTATTGGCTGCCGGAGCGG
ACCTGAGCCTCCGCTCCGGTGATAACAACGAATCAGCGTTGGAAACGGCT
GCCATTAATGGGGACGTGGATGTAGTGCGAGCAATGGTGCGGCACGGGGT
GGACGTTAATGCTCGCGACTCTCAAGGCCTCACTGCGCTACACGCGGTCG
CTGAGAGCAATCAGGCAGGCGCGATCGATGCGCTTGTCGAAGCAGGAGCG
CACGTCAACGCTCGGGGGAGGGGGTGGAAAGGGTAAGACACCGCTCTATG
TGGCAAGTGCAAGCGGTTCACTAGAGGCTGCATTGGCCCTGCTGAGGAAT
GGTGCGGACGTTCACGAGCTGGCCAGTTATCACCGCACTGCCCTCCATAT
TGCGGCCAAAAGAGGACACACTACCGTTGTCAATGCCCTTCTGGACGCTG
GCGCGAGGCTTCATCTCCGCACAAATAAGTACGACAGCGGAGATACGCCG
CTAGACTTGGCCGCTAAGAAGGGACAGTCGCCATCGTTCAACGGCTAATC
CGGCACGGTGCCAGGTTGAATGCCAGAGACGCAGATGGGTTGACTACCTT
GCACAAGACTGCCTCCGAAAACGAGCCTGATGTGATCGATACGCTAGTAG
CAGCAGGGGCTGAAGTGGATGCCGTTTATCCGGAGAGCGGCTTTACGCCC
CTCCACGTAGCGTCCATCGACGAGTGCTCCGAGGCCGCCCGCTCTCTTTG
GAAG back to topCoding sequence (CDS) from alignment at Scaffold_581:101573..102476+ >EsuBft555_10a-0001 ID=EsuBft555_10a-0001|Name=EsuBft555_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=564bp|location=Sequence derived from alignment at Scaffold_581:101573..102476+ (Ectocarpus subulatus male Bft15b)
ATGGGCCATACCCCTCTGCACCTTGCCGCCGGCTTGGGCTGTGACGATAT
GATGCCCCTGATTCTTCAACAAGGGGCTGTCGTGGATGCGCTGGATAACC
AGCGTCGGACTCCCTTGCACCTCGCAGCAACCGTAGGTTCTTGTCCTGCG
GTGGAAGTGCTATTGGCTGCCGGAGCGGACCTGAGCCTCCGCTCCGGTGA
TAACAACGAATCAGCGTTGGAAACGGCTGCCATTAATGGGGACGTGGATG
TAGTGCGAGCAATGGTGCGGCACGGGGTGGACGTTAATGCTCGCGACTCT
CAAGGCCTCACTGCGCTACACGCGGTCGCTGAGAGCAATCAGGCAGGCGC
GATCGATGCGCTTGTCGAAGCAGGAGCGCACGTCAACGCTCGGGGGAGGG
GGTGGAAAGGAGGCTGCATTGGCCCTGCTGAGGAATGGTGCGGACGTTCA
CGAGCTGGCCAGTTATCACCGCACTGCCCTCCATATTGCGGCCAAAAGAG
GACACACTACCGTTGTCAATGCCCTTCTGGACGCTGGCGCGAGGCTTCAT
CTCCGCACAAATAA back to top
|