EsuBft2202_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2202_2a-0001
Unique NameEsuBft2202_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_581contigScaffold_581:8524..10238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog654926.Q8QNC1_ESV1K
ProteomeIdEsuBft2202_2
Protein domainsCoil
Protein domainsIPR017905
Ownerapollo_admin@sb-roscoff.fr
Noteprobable fad-linked sulfhydryl oxidase r596 os:acanthamoeba polyphaga mimivirus gn:mimi [Automatic annotation]
Nb exon5
Max annot lvl10239|Viruses
Length1458
Hectar predicted targeting categoryother localisation
Evalue5.86e-45
EggNOG OGs4QB94@10239|Viruses,4QVJI@35237|dsDNA viruses no RNA stage
Date last modified2016-06-14
Date creation2016-06-14
DescriptionErv1 / Alr family
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0055114
GO0016972
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2202_2aEsuBft2202_2aEctocarpus subulatus male Bft15bgeneScaffold_581 8524..10238 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2202_2a-0001EsuBft2202_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_581 8524..10238 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2202_2a-0001-exonagat-exon-610Ectocarpus subulatus male Bft15bexonScaffold_581 8524..8691 -
EsuBft2202_2a-0001-exonagat-exon-608Ectocarpus subulatus male Bft15bexonScaffold_581 8743..8928 -
EsuBft2202_2a-0001-exonagat-exon-607Ectocarpus subulatus male Bft15bexonScaffold_581 8975..9323 -
EsuBft2202_2a-0001-exonEsuBft2202_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_581 9405..9878 -
EsuBft2202_2a-0001-exonagat-exon-609Ectocarpus subulatus male Bft15bexonScaffold_581 9958..10238 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2202_2a-0001-cdsEsuBft2202_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_581 8524..8691 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2202_2a-0001 ID=EsuBft2202_2a-0001|Name=EsuBft2202_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1458bp|location=Sequence derived from alignment at Scaffold_581:8524..10238- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCGTCGTCAGTATCACCATCGTCCGCATCACTCGGCTCCAAGCT
GTCCAAGATCGAGGAGAACCAAGAAGATGATCTGAAGCGCATCAGGAAAA
ACGAGAGAAACATCCACAAGAACTACGACGACATCAAGGAGAACAACGAG
GACATCACCAAGGCCAACCTTCGGATCGAGCACCTCGAAACCACACTGGC
TTCGTACGAGGAGAGAATGGCGGCCCTCGAGACTTGCGTCGAGTCTCTCA
AGCACTCCGCTTCATCAGCACCGATATCCAATCTGTCGGCGCAGCTTCAG
ATGGATCGTTCGGCGCTGATCGCGTTCAGCGAGATGAACAAGGCTCTGCC
CGTGACCGAGAGGCACGTTTGGGAGAGGCCTCTCGAGAACGGGGACGGCA
GCGTCAGAATCCAGAAGATGGACAGGATCGTCGACATCAAGAGCCTGGAG
TACTTGCTCCGGACCAAAGCCACCCGGAATGTGGTGAACAATATCCTGGT
CAGCACGGGCGGACCGAAGCTCGAGATACCCCCGACCCTCCGGAGAAAGT
ACTGGGTGTTCATCAAAGACGGCGAGCTCACCACAATCAGCAAGGACTTC
AAGGGCGGCGTCGGGTACGAGTACTTGTGGACCGAGGACGCCGCGCTCAG
CCTACCGTCCACCGACTGGAAGCTTCCCGTGAGGCGCCAGACAGATCCGC
GCAGGGCCTACGTCGACCCTCGGACCAACGCTCTGTGGCTGCCGGAAGAG
GACCAGACGAGGCAGGCGGTGGAGGCGGCGGTGGACGTGGTGGACGCGGT
GGTGGAGGCCGCGGTTGAGGCGGCGGAGAGCGAAAGCAAAGGCGACGACG
ATGGCGACAACAACGGCAACGATCAACCGGAGGTCGAAAAACAAGCAGAA
AGAGGCAGTGCAGCTGTAGAAGAAGACGCAGCGGGGGAAGGTTCGCGGGG
AAACGGGGGTGCTGTCATCGGTCACAAGCGTTCGTTGCAGGATGTCGGAG
AAACGCCGTCGACTTCATCGTCGGAGTCAGAGTCGGAATCAGAGTCGGAA
TCAGAGTCGGAGTCGGAGTCGGAGTCGGACGACGGTGCACCCAAGAGGCC
GCGAACTTGGCTTGGAAGAAATATCAACAACATTTTCCTACACTGTGTCG
CCGCTGGTTTCCCCGTTGATCCGGACGAATACGATGACATTCGCGGCAAT
ATGAGAGGGAAGATAAATAAACACTACATGTCTTTCTTCAAGAACGCGGG
ACATGTTTTGCCGTGCCGGTTCTGCAGAGAGTCGTACCTTTTGTTTGGGT
GGCTCGCCATCATACACAACAAAGTCAACAAGAAGAATGGTGCCAAACAA
GAAACCAGTCTTCAGGCCGTCGTGGACAAGTACGAGAAGTTCAGAGCTTC
GTGTCAGAATCGGAAAGCTTTGGGGTGCACCGAGCCCGCGAAGAAAACGC
GAAGATGA
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protein sequence of EsuBft2202_2a-0001

>EsuBft2202_2 ID=EsuBft2202_2|Name=EsuBft2202_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=485bp
MSSSSVSPSSASLGSKLSKIEENQEDDLKRIRKNERNIHKNYDDIKENNE
DITKANLRIEHLETTLASYEERMAALETCVESLKHSASSAPISNLSAQLQ
MDRSALIAFSEMNKALPVTERHVWERPLENGDGSVRIQKMDRIVDIKSLE
YLLRTKATRNVVNNILVSTGGPKLEIPPTLRRKYWVFIKDGELTTISKDF
KGGVGYEYLWTEDAALSLPSTDWKLPVRRQTDPRRAYVDPRTNALWLPEE
DQTRQAVEAAVDVVDAVVEAAVEAAESESKGDDDGDNNGNDQPEVEKQAE
RGSAAVEEDAAGEGSRGNGGAVIGHKRSLQDVGETPSTSSSESESESESE
SESESESESDDGAPKRPRTWLGRNINNIFLHCVAAGFPVDPDEYDDIRGN
MRGKINKHYMSFFKNAGHVLPCRFCRESYLLFGWLAIIHNKVNKKNGAKQ
ETSLQAVVDKYEKFRASCQNRKALGCTEPAKKTRR
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mRNA from alignment at Scaffold_581:8524..10238-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2202_2a-0001 ID=EsuBft2202_2a-0001|Name=EsuBft2202_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1715bp|location=Sequence derived from alignment at Scaffold_581:8524..10238- (Ectocarpus subulatus male Bft15b)
ATGTCGTCGTCGTCAGTATCACCATCGTCCGCATCACTCGGCTCCAAGCT
GTCCAAGATCGAGGAGAACCAAGAAGATGATCTGAAGCGCATCAGGAAAA
ACGAGAGAAACATCCACAAGAACTACGACGACATCAAGGAGAACAACGAG
GACATCACCAAGGCCAACCTTCGGATCGAGCACCTCGAAACCACACTGGC
TTCGTACGAGGAGAGAATGGCGGCCCTCGAGACTTGCGTCGAGTCTCTCA
AGCACTCCGCTTCATCAGCACCGATATCCAAGTCAAATTCGAAGCTCAAG
ACGAAGCCGACACCCAGTGCCAGCTCCGAACCACCGGCGCCCCAACCGAA
GAAGAATAAGTCTGTCGGCGCAGCTTCAGATGGATCGTTCGGCGCTGATC
GCGTTCAGCGAGATGAACAAGGCTCTGCCCGTGACCGAGAGGCACGTTTG
GGAGAGGCCTCTCGAGAACGGGGACGGCAGCGTCAGAATCCAGAAGATGG
ACAGGATCGTCGACATCAAGAGCCTGGAGTACTTGCTCCGGACCAAAGCC
ACCCGGAATGTGGTGAACAATATCCTGGTCAGCACGGGCGGACCGAAGCT
CGAGATACCCCCGACCCTCCGGAGAAAGTACTGGGTGTTCATCAAAGACG
GCGAGCTCACCACAATCAGCAAGGACTTCAAGGGCGGCGTCGGGTACGAG
TACTTGTGGACCGAGGACGCCGCGCTCAGCCTACCGTCCACCGACTGGAA
GCTTCCCGTGAGGCGCCAGACAGATCCGCGCAGGGCCTACGTCGACCCTC
GGACCAACGCTCTGTGGCTGCCGGAAGAGGACCAGTAGCTTTAGTTTCTT
CTACCCCTCCTCCTCCTCCTCCTCCAGGAGGAGGAGGTGGTGGTGGTGGA
GGAGGAGGCGGAGAGGACGAGGCAGGCGGTGGAGGCGGCGGTGGACGTGG
TGGACGCGGTGGTGGAGGCCGCGGTTGAGGCGGCGGAGAGCGAAAGCAAA
GGCGACGACGATGGCGACAACAACGGCAACGATCAACCGGAGGTCGAAAA
ACAAGCAGAAAGAGGCAGTGCAGCTGTAGAAGAAGACGCAGCGGGGGAAG
GTTCGCGGGGAAACGGGGGTGCTGTCATCGGTCACAAGCGTTCGTTGCAG
GATGTCGGAGAAACGCCGTCGACTTCATCGTCGGAGTCAGAGTCGGAATC
AGAGTCGGAATCAGAGTCGGAGTCGGAGTCGGAGTCGGACGACGGTGCAC
CCAAGAGGCCGCGAGTGATGTAGTTCTCGGGGCGGTTTAGTTGTGTTTGT
TGCAATGCAGACTTGGCTTGGAAGAAATATCAACAACATTTTCCTACACT
GTGTCGCCGCTGGTTTCCCCGTTGATCCGGACGAATACGATGACATTCGC
GGCAATATGAGAGGGAAGATAAATAAACACTACATGTCTTTCTTCAAGAA
CGCGGGACATGTTTTGCCGTGCCGGTTCTGCAGAGAGTCGTACCTTGTAT
TCTTGTCCGAAACTCCAGTTGAGAAACACATTCACTCGCGATAAAAGTTG
TTTGGGTGGCTCGCCATCATACACAACAAAGTCAACAAGAAGAATGGTGC
CAAACAAGAAACCAGTCTTCAGGCCGTCGTGGACAAGTACGAGAAGTTCA
GAGCTTCGTGTCAGAATCGGAAAGCTTTGGGGTGCACCGAGCCCGCGAAG
AAAACGCGAAGATGA
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Coding sequence (CDS) from alignment at Scaffold_581:8524..10238-

>EsuBft2202_2a-0001 ID=EsuBft2202_2a-0001|Name=EsuBft2202_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1458bp|location=Sequence derived from alignment at Scaffold_581:8524..10238- (Ectocarpus subulatus male Bft15b)
ATGTCGTCGTCGTCAGTATCACCATCGTCCGCATCACTCGGCTCCAAGCT
GTCCAAGATCGAGGAGAACCAAGAAGATGATCTGAAGCGCATCAGGAAAA
ACGAGAGAAACATCCACAAGAACTACGACGACATCAAGGAGAACAACGAG
GACATCACCAAGGCCAACCTTCGGATCGAGCACCTCGAAACCACACTGGC
TTCGTACGAGGAGAGAATGGCGGCCCTCGAGACTTGCGTCGAGTCTCTCA
AGCACTCCGCTTCATCAGCACCGATATCCAATCTGTCGGCGCAGCTTCAG
ATGGATCGTTCGGCGCTGATCGCGTTCAGCGAGATGAACAAGGCTCTGCC
CGTGACCGAGAGGCACGTTTGGGAGAGGCCTCTCGAGAACGGGGACGGCA
GCGTCAGAATCCAGAAGATGGACAGGATCGTCGACATCAAGAGCCTGGAG
TACTTGCTCCGGACCAAAGCCACCCGGAATGTGGTGAACAATATCCTGGT
CAGCACGGGCGGACCGAAGCTCGAGATACCCCCGACCCTCCGGAGAAAGT
ACTGGGTGTTCATCAAAGACGGCGAGCTCACCACAATCAGCAAGGACTTC
AAGGGCGGCGTCGGGTACGAGTACTTGTGGACCGAGGACGCCGCGCTCAG
CCTACCGTCCACCGACTGGAAGCTTCCCGTGAGGCGCCAGACAGATCCGC
GCAGGGCCTACGTCGACCCTCGGACCAACGCTCTGTGGCTGCCGGAAGAG
GACCAGACGAGGCAGGCGGTGGAGGCGGCGGTGGACGTGGTGGACGCGGT
GGTGGAGGCCGCGGTTGAGGCGGCGGAGAGCGAAAGCAAAGGCGACGACG
ATGGCGACAACAACGGCAACGATCAACCGGAGGTCGAAAAACAAGCAGAA
AGAGGCAGTGCAGCTGTAGAAGAAGACGCAGCGGGGGAAGGTTCGCGGGG
AAACGGGGGTGCTGTCATCGGTCACAAGCGTTCGTTGCAGGATGTCGGAG
AAACGCCGTCGACTTCATCGTCGGAGTCAGAGTCGGAATCAGAGTCGGAA
TCAGAGTCGGAGTCGGAGTCGGAGTCGGACGACGGTGCACCCAAGAGGCC
GCGAACTTGGCTTGGAAGAAATATCAACAACATTTTCCTACACTGTGTCG
CCGCTGGTTTCCCCGTTGATCCGGACGAATACGATGACATTCGCGGCAAT
ATGAGAGGGAAGATAAATAAACACTACATGTCTTTCTTCAAGAACGCGGG
ACATGTTTTGCCGTGCCGGTTCTGCAGAGAGTCGTACCTTTTGTTTGGGT
GGCTCGCCATCATACACAACAAAGTCAACAAGAAGAATGGTGCCAAACAA
GAAACCAGTCTTCAGGCCGTCGTGGACAAGTACGAGAAGTTCAGAGCTTC
GTGTCAGAATCGGAAAGCTTTGGGGTGCACCGAGCCCGCGAAGAAAACGC
GAAGATGA
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