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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FWJ6 |
| ProteomeId | EsuBft1005_11 |
| Protein domains | IPR016024 |
| Protein domains | IPR002554 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | serine threonine protein phosphatase 2a 59 kda regulatory subunit b eta isoform os:arabidopsis [Automatic annotation] |
| Nb exon | 7 |
| Max annot lvl | 2759|Eukaryota |
| Length | 981 |
| Hectar predicted targeting category | other localisation |
| Evalue | 6.09e-216 |
| EggNOG OGs | KOG2085@1|root,KOG2085@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K11584 |
| KEGG Pathway | ko03015,ko04071,ko04113,ko04114,ko04151,ko04152,ko04261,ko04728,ko05165,map03015,map04071,map04113,map04114,map04151,map04152,map04261,map04728,map05165 |
| GOs | GO:0000096,GO:0000159,GO:0000902,GO:0000904,GO:0002682,GO:0002683,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005777,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008287,GO:0009058,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009653,GO:0009759,GO:0009888,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010026,GO:0010090,GO:0010565,GO:0010646,GO:0010648,GO:0016043,GO:0016143,GO:0016144,GO:0017144,GO:0018130,GO:0019216,GO:0019217,GO:0019220,GO:0019222,GO:0019438,GO:0019748,GO:0019752,GO:0019757,GO:0019758,GO:0019760,GO:0019761,GO:0023051,GO:0023057,GO:0030154,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0031998,GO:0032000,GO:0032502,GO:0032989,GO:0032991,GO:0033353,GO:0034641,GO:0042278,GO:0042325,GO:0042343,GO:0042430,GO:0042435,GO:0042579,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045088,GO:0045824,GO:0045834,GO:0045923,GO:0046128,GO:0046320,GO:0046321,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0048869,GO:0050776,GO:0050777,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051174,GO:0051186,GO:0055086,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072521,GO:0080090,GO:0080134,GO:0080183,GO:0090342,GO:0090558,GO:0090626,GO:0097159,GO:1900457,GO:1900458,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901657,GO:1901659,GO:1902494,GO:1903293,GO:2000377 |
| Description | protein phosphatase regulator activity |
| COG category | Z |
| BRITE | ko00000,ko00001,ko01009,ko03036 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0030018 |
| GO | 0035307 |
| GO | 0034138 |
| GO | 0035666 |
| GO | 0048011 |
| GO | 0006006 |
| GO | 0000159 |
| GO | 0002755 |
| GO | 0008601 |
| GO | 0007399 |
| GO | 0005829 |
| GO | 0034134 |
| GO | 0051403 |
| GO | 0090219 |
| GO | 0031430 |
| GO | 0034146 |
| GO | 0005654 |
| GO | 0003333 |
| GO | 0004722 |
| GO | 0006112 |
| GO | 0034166 |
| GO | 0038124 |
| GO | 0034142 |
| GO | 0006096 |
| GO | 0034162 |
| GO | 0019900 |
| GO | 0090005 |
| GO | 0038123 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1005_11a-0001 ID=EsuBft1005_11a-0001|Name=EsuBft1005_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=981bp|location=Sequence derived from alignment at Scaffold_576:171269..176623- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
NNNNNCACCCCGGCGGTGATGCCAGACGTGATCGCCATGGTGAAGGCGAA
TATTTGTCGAGCGTTGCCACCGCAGCCTGACGACTGCGATCCGGACAAAG
ACGAGCCTTTGCTCGAGGAGGCCTGGCCGCACTTGCAGGTGGTGTACGAG
TTCTTAGTCCGGTTTGTCGTGTCGTCGGAGGTGGACGCGAAGCAGGCCAA
GCAGTACGTGGACCAGGCCATGTGCTTGCAGCTCGTCGATCTTTTCGACA
GTGAGGACCCGCGGGAGCGTGACTACCTCAAGACGATTCTCCACAGGGTA
TACGGGAAGTTCATGATGCACCGAGCGTTCATCCGGCGAGCTGTCGGGAA
TGCGTTCCTCAGGTTTGTGTATGAGTGCCCTAGACACAATGGCATCGGGG
AGTTGCTGGAGATCCTAGGGAGCATCGTGAACGGTTTCGCGACGCCGTTG
AAGAAGGAACACGTGGACTTCTTGCAGGTCTGCCTGCTGCCGCTGCACAC
GCCGACCATGGTCAACATCTACCACCAGCAGCTGAGCTACTGCGTGGTAC
AGTATGTGGAGAAGGAGGCGGACACGGCAACACATATCCTCAAAAGCCTG
ATTCGGTTCTGGCCGTGGCGAAGCTCGAGCAAGCAAGTGATTTTCATTAA
CGAGCTGGAGGAGGTGCTGGAACTGCTGGCGGGGCCGGACCAGATAGCTG
AGGTGGAGGACCAGCTCTTCAACTTGCTGGCGCGCTGCATCTCGAGCGAA
CACTTCCAGGTGGCGGAACGCGCGCTTTTCTTGTGGAACAACGAGCATCT
CGTTACGGCTGGGGTCCTCTCGATGCAGTACCCGAGCCCGCTTCTGCCAG
TCATCTACGGCCCCCTTCGGGAGCGCTCGACGCGCCACTGGAACACCACT
GTGGAAGGGCTGGCCCACAACGTGCTAAGAATGTACAACGACCAAGACGC
TGCGGCATTTGAAAGGTGCGAGGTCGAATGA back to topprotein sequence of EsuBft1005_11a-0001 >EsuBft1005_11 ID=EsuBft1005_11|Name=EsuBft1005_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=320bp
MPDVIAMVKANICRALPPQPDDCDPDKDEPLLEEAWPHLQVVYEFLVRFV
VSSEVDAKQAKQYVDQAMCLQLVDLFDSEDPRERDYLKTILHRVYGKFMM
HRAFIRRAVGNAFLRFVYECPRHNGIGELLEILGSIVNGFATPLKKEHVD
FLQVCLLPLHTPTMVNIYHQQLSYCVVQYVEKEADTATHILKSLIRFWPW
RSSSKQVIFINELEEVLELLAGPDQIAEVEDQLFNLLARCISSEHFQVAE
RALFLWNNEHLVTAGVLSMQYPSPLLPVIYGPLRERSTRHWNTTVEGLAH
NVLRMYNDQDAAAFERCEVE back to topmRNA from alignment at Scaffold_576:171269..176623- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1005_11a-0001 ID=EsuBft1005_11a-0001|Name=EsuBft1005_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5355bp|location=Sequence derived from alignment at Scaffold_576:171269..176623- (Ectocarpus subulatus male Bft15b)
NNNNNCACCCCGGCGGTGATGCCAGACGTGATCGCCATGGTGAAGGCGAA
TATTTGTCGAGCGTTGCCACCGCAGCCTGACGACTGCGATCCGGACAAAG
ACGAGCCTTTGCTCGAGGAGGCCTGGCCGCACTTGCAGGTGAGAGGAGGG
GAAGGGAAGGGAGGGGTTTGCATGTTTTAAGGTGGCCGTTTGTTGGCGTG
TCCAGTGTGGGCTATGCTCGAGGAGGCCTGTCCACACCTGCAGGTGACAG
GAGAGGAGGGAAGAGGGGGTTTGCATGTCTTACGGCGGCGTTTGAGATAA
TTTTTTCGTGTGTAGTGTGGCCTTCGCTGGAGGAGGCCTGTCCCCTCTTG
AAGGTTACAGGAGGGAGGAGGAGAGGAGGGGTTCCATGTTTTTCGGTGGC
ATTCCTGAGCCCGTGTGATGTTGACCACGGAAGGCACCATCGTCGGGTGG
ACCGGTAGATACGGATGTTGGAGGGTTACTGAGCGGAGATCGGGACGGTG
TTTTCTGTGAAGGCAACAAGAAGGATGTACTTGTACGGTGTTTGGTCTTG
GTTGTCGAGATTCACTCCTCTTGCCAGCCTAGCGATTGGGAAGCCGTTGG
TGTTTTTGTTGTGTTTCTTCGAGTGTTGCCGACCGCGCTACCGACTGACT
GGCTGGCGATTGCCCCCCACGTTGTTTGTCGTGTCCTTGTCCTGTTCCGT
GGCAGGTGGTGTACGAGTTCTTAGTCCGGTTTGTCGTGTCGTCGGAGGTG
GACGCGAAGCAGGCCAAGCAGTACGTGGACCAGGCCATGTGCTTGCAGCT
CGTCGATCTTTTCGACAGGTAAGACGATAGAGGGGCAGGAGGAGGGGGGC
GGGGGGGGCGGGGGGTTGACGGCGTCAGGTAAGAGTGATGTACACGCATA
TATACGAAGAAGGTTGGTGGAGGAGGAGAGAGGTGGGTGTGTGACTGGGT
GAGATATACTGCATGTGCACATGGTGATGTACACGCATGCTGTTTGTACG
ATAAGAGGTGGATGGAGAATCCGTAGGTCAGACTTGCTGATGTGCACATG
GTGATGTGCACATGGTGATGTACACGCATGCTATACACGAAGGAAGTGGA
TCGAGAAATCCGGAAGGGGTCGCGCAAAGTAGCAGCATTCTCGAGTTAGA
TATGCTGAGGAGAGGAGAGGCATGTCTATGGCGGTCCACGATGAGGAGGG
TTAGATCCGTTCAGGGGGATAGGTGTAAACATGTCCCCGATGTCGAACGG
TCGAAGTTCCATTAGTAGGGCGGTCGTCCCTGGAAGCCCAGTTGAGCAAC
CCTGACTCTTGAGGATGTCGTGGACCGCGGCGTCTCTAGGCCACCGGCCC
CCCCTCACTGGTGGCCGTACAACATGATGGTATTCCGTAGGGTTTGCCAG
CCAGGCAGCTTGAATTTTTCGTGCGTGTGCCACGAAAATTTGTTGGTGTT
GACCCATGGGTTGGTGGCCTGCAGGCGGTGAGAGTGCTGGCCCATCTCTC
TCCGCGATGGATGTCTGCTCTTCCTGTAGATCCTTTGTCTTGTGTGTTAT
GTTGTTTGTTGTTTCTCACGTTAGCTCTGTAGTCCACAAAAAATGGGGAG
CCCGCGGTCTCAAAACCCGGCACATACGACGCCGCGGGGAAACAAAACAA
AAAAAGGGTACAGACCACTCGGAAAGAGAAAACAAAATGTCAGAAAGAAA
AGAACATGTACCGCACCGACCGTTGGAGAAAAGAGCCCTCGGTAACCGAT
CAAAATACAACAAAAACAAAAACAAAAATTGTGTGTAGATGGTTCTGCTT
TGGGGCGGTGAGAGTGTTTGCCCTTCCTCGGTGCCGTTCGTTTTTTGTCG
TTATTAATTACCCTCTTTGCTTGGTGTATTTGTGTTGGAACAGTGAGGAC
CCGCGGGAGCGTGACTACCTCAAGACGATTCTCCACAGGGTATACGGGAA
GTTCATGATGCACCGAGCGTTCATCCGGCGAGCTGTCGGGAATGCGTTCC
TCAGGTCGGCAAAGAAAAGAACCACACATGTATATTTTTTTCATGTTTGA
AGTGCATGTGGGTGGCAAAACTGATATGTACGGTATGTGTTGGTGTCACT
CTGCTTGTTGTTTCATGGTTGTACGTAGCCCGTGACCTTGTTGCCTTTTG
CGAGTGTGTTGGATCTCGTCCTTGACCTAATGCGTAGACGAGGTGGGCGA
CATTCTTGCCATGGTCTAGTAGAACGGCTGGATACATCGCTTTTCGCATG
ACTATTATATCTCCATGCCAGACTTGTTCCCCACAATGCCACATGTTACT
AATGTTGGTGTACCTTCCCCATGTGATTGTCGTTCTTACCGTTGTTGCTG
CTGCTGTCGCTGTTGTATTCCGGTGCATTATTGTTATTGTTGCTGTGTTA
TCTTAATTGCCCATCTGTTTATGCATGCATTCCAACGCCCGTGGCAGGTT
TGTGTATGAGTGCCCTAGACACAATGGCATCGGGGAGTTGCTGGAGATCC
TAGGGAGCATCGTGAACGGTTTCGCGACGCCGTTGAAGAAGGAACACGGT
AAGACGGAGGGAGGGAGAAATGAAGTAGACGTACCGGGGTGACACGTGAC
GTCGATCGCCAAGCGCGTGGTTGTGCTTGTGGTTGTCCTTGTTGCTGTTG
TTGTAGAAGCGGCTGCGTGAGGTGTTGGTTGTTGTCACGCTGTTGCTGTG
TGACCTGCTGCCGCTGCTTTGTTGGCTGTTGTTGTTATATTCTGTTTGTC
TTTGTTGTAGTTGTTGTCGTTGTTACTGCTGCTGTACGAGCTCTTGTTGT
TCGTGATAACCGAATTTTCTCGGCGTCCGAGTAAGTACTCCCGTACGATG
TCTCCAGGACCCACCTCATGCTATCCGAGCCAGACTGGAAGAATACAGAG
CAAACGCGATACTCAGTTGAAACCCATCGCCGCGGGGATAGGGAGTGCCT
CAACGTTCAACACGGTGTTGAACACGTTCCTGACCGTTTTCCACACCTTT
GTGTCGTTTTGTAAAAAGTTACGGGTTGTCGCTTTTGTGACCAACAAGCA
CGTGTGAGTGAGAGTAAGACGAACATTAACGACCACCTTGTCTTGCGAAC
TCTTGTTTGTCCTGCGTGGGGGCCGGGAAATTACCCTGCGGCACATGGCG
GGCGCACCCAACAGTGGACTTCTTGCAGGTCTGCCTGCTGCCGCTGCACA
CGCCGACCATGGTCAACATCTACCACCAGCAGCTGAGCTACTGCGTGGTA
CAGTATGTGGAGAAGGAGGCGGACACGGCAACACATATCCTCAAAGTACG
AAGTCGCGGCTATCGTTTGGATTGCGGCTTGAGGTTGCAGCAGTTTCTTT
GTTATTTCGTCGAGGCTCTGGTGTGCTCAGCACCCCTATTGATGGACGGT
TTTTGCTCCTTGCCTTCTCTTTTTCCTGTCTCGTCTGGGTTCAGGTGTGC
TCAGCTGCGAGCACACGTGAACCCAGACGAGACAGGAAAAAGAGAAGGCA
AGGAGCAGTATCCCGTCTTATGTATCTATTGGGTGCTGAGCACACCGGAA
CCCAGACGAGACAACAAGAATGGAAGGCGAGGAGCAAAAACCCGTCTGAT
CAATAGAGGTGCTGGGCACACCGGATAGACAGGTTTTGTTCTCTTGCTTG
AGTGAGCACGGTTCCTCAGCAAGCAACGCCACGGCATACGTTGTAGTTCG
CTGCTGCTGTCGTCTACCGTATACCAACCATCGTGTCATGCAACGATCGA
TCGTGCTAGTCAACCATCTCCTACGATCACGCCATATGAGGCATCATCAC
GTATCAGCCACTCGCACCCTGACACGACGCTTTCGCTTTGATCACTACCC
CGCGATGGCACTCCAGAGCCTGATTCGGTTCTGGCCGTGGCGAAGCTCGA
GCAAGCAAGTGATTTTCATTAACGAGCTGGAGGAGGTGCTGGAACTGCTG
GCGGGGCCGGACCAGATAGCTGAGGTGGAGGACCAGCTCTTCAACTTGCT
GGCGCGCTGCATCTCGAGCGAACACTTCCAGGTGAGGTAGTAGCCCGGGC
TAGATCAAGCGTCATCACGCAGGGGAGAGAGTAAAAAAGGTTCGGTGGGC
GAGACCTAGCTTCGCAGCTTGGTCGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTT
TTGTCTTGACACATGTATAGTTGAAGATATCATGGATCAGANTCTTGACA
CATGTATAGTTGAAGATATCATGGATCAGACACGACAAGGTGGTAATGGG
CGGCGCAGGAGGCCTCACCCAAACAAGCCAGTACTTGCGTCGAATGATCT
GGGAAAGGGACAAATATTTATCGGATATGACATGAATCCCGATTCGCGTC
AGCAAGGAGGCCTTTTCGGCATGAGGCTTTTCCGAAACACTATACACGTT
GCGCTGGACCCCCCTCCCGTTATGCTCCGTCCTCTCGAGGACGCGTGGTC
CATGGTCTAGCAGCTTAGGCATGCGGAACGTGAGCGCCCCCCCCCCCCCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCCCCCCCCCCGA
AGATAGAAGACGATTGAAACCCCTCTCGATACGGCAGCTGTGTGTGGCGT
TTCTCCTCGTCTTGATCCCTTCTAGAAAACTGCGAAAAATAGCTAGTCTG
TGCCGGTGACGGGATGCGCAAGTGTGAGTCACGAAAGCAAAATTCACATC
CGGCAATCTTGGGACCAGTCTCAGCATACACTCAAGAGTCAAAATGCTCC
AAGTGCTGCATGGTGCGCGTTCGACGTTTTGATTTTTTCGTCGCTTGTTG
CCCATTCTTGTTGCTTTTGGTCGCAACACCCGCGCTTGTTGGTGCTCATG
TCTGGTGGTCGGCACCCGGTCACGATTATGGATAAGCTACGTATATATAC
GCTAGTTGTAACGTGATAATCGTCGTCGTAGTCGGTGGCATCGGCAGGAC
CAGCACCCACAGCATCTTTCGATGGATCTGTGGTAACAACCGCCGTGGCA
CGCGGTATTCCGTAAACTTTGAAGGTTTCAATGACTTTGTCGTCACAACT
GCCGTGACACCCTGTTTTCCGTAAACTTTGAAGGTGGCGGAACGCGCGCT
TTTCTTGTGGAACAACGAGCATCTCGTTACGGCTGGGGTCCTCTCGATGC
AGTACCCGAGCCCGCTTCTGCCAGTCATCTACGGCCCCCTTCGGGAGCGC
TCGACGCGCCACTGGAACACCACTGTGGAAGGGCTGGCCCACAACGTGCT
AAGAATGTACAACGACCAAGACGCTGCGGCATTTGAAAGGTGCGAGGTCG
AATGA back to topCoding sequence (CDS) from alignment at Scaffold_576:171269..176623- >EsuBft1005_11a-0001 ID=EsuBft1005_11a-0001|Name=EsuBft1005_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=963bp|location=Sequence derived from alignment at Scaffold_576:171269..176623- (Ectocarpus subulatus male Bft15b)
ATGCCAGACGTGATCGCCATGGTGAAGGCGAATATTTGTCGAGCGTTGCC
ACCGCAGCCTGACGACTGCGATCCGGACAAAGACGAGCCTTTGCTCGAGG
AGGCCTGGCCGCACTTGCAGGTGGTGTACGAGTTCTTAGTCCGGTTTGTC
GTGTCGTCGGAGGTGGACGCGAAGCAGGCCAAGCAGTACGTGGACCAGGC
CATGTGCTTGCAGCTCGTCGATCTTTTCGACAGTGAGGACCCGCGGGAGC
GTGACTACCTCAAGACGATTCTCCACAGGGTATACGGGAAGTTCATGATG
CACCGAGCGTTCATCCGGCGAGCTGTCGGGAATGCGTTCCTCAGGTTTGT
GTATGAGTGCCCTAGACACAATGGCATCGGGGAGTTGCTGGAGATCCTAG
GGAGCATCGTGAACGGTTTCGCGACGCCGTTGAAGAAGGAACACGTGGAC
TTCTTGCAGGTCTGCCTGCTGCCGCTGCACACGCCGACCATGGTCAACAT
CTACCACCAGCAGCTGAGCTACTGCGTGGTACAGTATGTGGAGAAGGAGG
CGGACACGGCAACACATATCCTCAAAAGCCTGATTCGGTTCTGGCCGTGG
CGAAGCTCGAGCAAGCAAGTGATTTTCATTAACGAGCTGGAGGAGGTGCT
GGAACTGCTGGCGGGGCCGGACCAGATAGCTGAGGTGGAGGACCAGCTCT
TCAACTTGCTGGCGCGCTGCATCTCGAGCGAACACTTCCAGGTGGCGGAA
CGCGCGCTTTTCTTGTGGAACAACGAGCATCTCGTTACGGCTGGGGTCCT
CTCGATGCAGTACCCGAGCCCGCTTCTGCCAGTCATCTACGGCCCCCTTC
GGGAGCGCTCGACGCGCCACTGGAACACCACTGTGGAAGGGCTGGCCCAC
AACGTGCTAAGAATGTACAACGACCAAGACGCTGCGGCATTTGAAAGGTG
CGAGGTCGAATGA back to top
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