EsuBft1005_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Seed ortholog	2880.D7FWJ6
ProteomeId	EsuBft1005_11
Protein domains	IPR016024
Protein domains	IPR002554
Owner	apollo_admin@sb-roscoff.fr
Note	serine threonine protein phosphatase 2a 59 kda regulatory subunit b eta isoform os:arabidopsis [Automatic annotation]
Nb exon	7
Max annot lvl	2759\|Eukaryota
Length	981
Hectar predicted targeting category	other localisation
Evalue	6.09e-216
EggNOG OGs	KOG2085@1\|root,KOG2085@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K11584
KEGG Pathway	ko03015,ko04071,ko04113,ko04114,ko04151,ko04152,ko04261,ko04728,ko05165,map03015,map04071,map04113,map04114,map04151,map04152,map04261,map04728,map05165
GOs	GO:0000096,GO:0000159,GO:0000902,GO:0000904,GO:0002682,GO:0002683,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005777,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008287,GO:0009058,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009653,GO:0009759,GO:0009888,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010026,GO:0010090,GO:0010565,GO:0010646,GO:0010648,GO:0016043,GO:0016143,GO:0016144,GO:0017144,GO:0018130,GO:0019216,GO:0019217,GO:0019220,GO:0019222,GO:0019438,GO:0019748,GO:0019752,GO:0019757,GO:0019758,GO:0019760,GO:0019761,GO:0023051,GO:0023057,GO:0030154,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0031998,GO:0032000,GO:0032502,GO:0032989,GO:0032991,GO:0033353,GO:0034641,GO:0042278,GO:0042325,GO:0042343,GO:0042430,GO:0042435,GO:0042579,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045088,GO:0045824,GO:0045834,GO:0045923,GO:0046128,GO:0046320,GO:0046321,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0048869,GO:0050776,GO:0050777,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051174,GO:0051186,GO:0055086,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072521,GO:0080090,GO:0080134,GO:0080183,GO:0090342,GO:0090558,GO:0090626,GO:0097159,GO:1900457,GO:1900458,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901657,GO:1901659,GO:1902494,GO:1903293,GO:2000377
Description	protein phosphatase regulator activity
COG category	Z
BRITE	ko00000,ko00001,ko01009,ko03036

Cross References

External references for this mRNA


Database	Accession
GO	0030018
GO	0035307
GO	0034138
GO	0035666
GO	0048011
GO	0006006
GO	0000159
GO	0002755
GO	0008601
GO	0007399
GO	0005829
GO	0034134
GO	0051403
GO	0090219
GO	0031430
GO	0034146
GO	0005654
GO	0003333
GO	0004722
GO	0006112
GO	0034166
GO	0038124
GO	0034142
GO	0006096
GO	0034162
GO	0019900
GO	0090005
GO	0038123

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_576:171269..176623-
coding sequence from alignment at Scaffold_576:171269..176623-

spliced messenger RNA

>EsuBft1005_11a-0001 ID=EsuBft1005_11a-0001|Name=EsuBft1005_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=981bp|location=Sequence derived from alignment at Scaffold_576:171269..176623- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNCACCCCGGCGGTGATGCCAGACGTGATCGCCATGGTGAAGGCGAA
TATTTGTCGAGCGTTGCCACCGCAGCCTGACGACTGCGATCCGGACAAAG
ACGAGCCTTTGCTCGAGGAGGCCTGGCCGCACTTGCAGGTGGTGTACGAG
TTCTTAGTCCGGTTTGTCGTGTCGTCGGAGGTGGACGCGAAGCAGGCCAA
GCAGTACGTGGACCAGGCCATGTGCTTGCAGCTCGTCGATCTTTTCGACA
GTGAGGACCCGCGGGAGCGTGACTACCTCAAGACGATTCTCCACAGGGTA
TACGGGAAGTTCATGATGCACCGAGCGTTCATCCGGCGAGCTGTCGGGAA
TGCGTTCCTCAGGTTTGTGTATGAGTGCCCTAGACACAATGGCATCGGGG
AGTTGCTGGAGATCCTAGGGAGCATCGTGAACGGTTTCGCGACGCCGTTG
AAGAAGGAACACGTGGACTTCTTGCAGGTCTGCCTGCTGCCGCTGCACAC
GCCGACCATGGTCAACATCTACCACCAGCAGCTGAGCTACTGCGTGGTAC
AGTATGTGGAGAAGGAGGCGGACACGGCAACACATATCCTCAAAAGCCTG
ATTCGGTTCTGGCCGTGGCGAAGCTCGAGCAAGCAAGTGATTTTCATTAA
CGAGCTGGAGGAGGTGCTGGAACTGCTGGCGGGGCCGGACCAGATAGCTG
AGGTGGAGGACCAGCTCTTCAACTTGCTGGCGCGCTGCATCTCGAGCGAA
CACTTCCAGGTGGCGGAACGCGCGCTTTTCTTGTGGAACAACGAGCATCT
CGTTACGGCTGGGGTCCTCTCGATGCAGTACCCGAGCCCGCTTCTGCCAG
TCATCTACGGCCCCCTTCGGGAGCGCTCGACGCGCCACTGGAACACCACT
GTGGAAGGGCTGGCCCACAACGTGCTAAGAATGTACAACGACCAAGACGC
TGCGGCATTTGAAAGGTGCGAGGTCGAATGA

protein sequence of EsuBft1005_11a-0001

>EsuBft1005_11 ID=EsuBft1005_11|Name=EsuBft1005_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=320bp
MPDVIAMVKANICRALPPQPDDCDPDKDEPLLEEAWPHLQVVYEFLVRFV
VSSEVDAKQAKQYVDQAMCLQLVDLFDSEDPRERDYLKTILHRVYGKFMM
HRAFIRRAVGNAFLRFVYECPRHNGIGELLEILGSIVNGFATPLKKEHVD
FLQVCLLPLHTPTMVNIYHQQLSYCVVQYVEKEADTATHILKSLIRFWPW
RSSSKQVIFINELEEVLELLAGPDQIAEVEDQLFNLLARCISSEHFQVAE
RALFLWNNEHLVTAGVLSMQYPSPLLPVIYGPLRERSTRHWNTTVEGLAH
NVLRMYNDQDAAAFERCEVE

mRNA from alignment at Scaffold_576:171269..176623-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1005_11a-0001 ID=EsuBft1005_11a-0001|Name=EsuBft1005_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5355bp|location=Sequence derived from alignment at Scaffold_576:171269..176623- (Ectocarpus subulatus male Bft15b)
NNNNNCACCCCGGCGGTGATGCCAGACGTGATCGCCATGGTGAAGGCGAA
TATTTGTCGAGCGTTGCCACCGCAGCCTGACGACTGCGATCCGGACAAAG
ACGAGCCTTTGCTCGAGGAGGCCTGGCCGCACTTGCAGGTGAGAGGAGGG
GAAGGGAAGGGAGGGGTTTGCATGTTTTAAGGTGGCCGTTTGTTGGCGTG
TCCAGTGTGGGCTATGCTCGAGGAGGCCTGTCCACACCTGCAGGTGACAG
GAGAGGAGGGAAGAGGGGGTTTGCATGTCTTACGGCGGCGTTTGAGATAA
TTTTTTCGTGTGTAGTGTGGCCTTCGCTGGAGGAGGCCTGTCCCCTCTTG
AAGGTTACAGGAGGGAGGAGGAGAGGAGGGGTTCCATGTTTTTCGGTGGC
ATTCCTGAGCCCGTGTGATGTTGACCACGGAAGGCACCATCGTCGGGTGG
ACCGGTAGATACGGATGTTGGAGGGTTACTGAGCGGAGATCGGGACGGTG
TTTTCTGTGAAGGCAACAAGAAGGATGTACTTGTACGGTGTTTGGTCTTG
GTTGTCGAGATTCACTCCTCTTGCCAGCCTAGCGATTGGGAAGCCGTTGG
TGTTTTTGTTGTGTTTCTTCGAGTGTTGCCGACCGCGCTACCGACTGACT
GGCTGGCGATTGCCCCCCACGTTGTTTGTCGTGTCCTTGTCCTGTTCCGT
GGCAGGTGGTGTACGAGTTCTTAGTCCGGTTTGTCGTGTCGTCGGAGGTG
GACGCGAAGCAGGCCAAGCAGTACGTGGACCAGGCCATGTGCTTGCAGCT
CGTCGATCTTTTCGACAGGTAAGACGATAGAGGGGCAGGAGGAGGGGGGC
GGGGGGGGCGGGGGGTTGACGGCGTCAGGTAAGAGTGATGTACACGCATA
TATACGAAGAAGGTTGGTGGAGGAGGAGAGAGGTGGGTGTGTGACTGGGT
GAGATATACTGCATGTGCACATGGTGATGTACACGCATGCTGTTTGTACG
ATAAGAGGTGGATGGAGAATCCGTAGGTCAGACTTGCTGATGTGCACATG
GTGATGTGCACATGGTGATGTACACGCATGCTATACACGAAGGAAGTGGA
TCGAGAAATCCGGAAGGGGTCGCGCAAAGTAGCAGCATTCTCGAGTTAGA
TATGCTGAGGAGAGGAGAGGCATGTCTATGGCGGTCCACGATGAGGAGGG
TTAGATCCGTTCAGGGGGATAGGTGTAAACATGTCCCCGATGTCGAACGG
TCGAAGTTCCATTAGTAGGGCGGTCGTCCCTGGAAGCCCAGTTGAGCAAC
CCTGACTCTTGAGGATGTCGTGGACCGCGGCGTCTCTAGGCCACCGGCCC
CCCCTCACTGGTGGCCGTACAACATGATGGTATTCCGTAGGGTTTGCCAG
CCAGGCAGCTTGAATTTTTCGTGCGTGTGCCACGAAAATTTGTTGGTGTT
GACCCATGGGTTGGTGGCCTGCAGGCGGTGAGAGTGCTGGCCCATCTCTC
TCCGCGATGGATGTCTGCTCTTCCTGTAGATCCTTTGTCTTGTGTGTTAT
GTTGTTTGTTGTTTCTCACGTTAGCTCTGTAGTCCACAAAAAATGGGGAG
CCCGCGGTCTCAAAACCCGGCACATACGACGCCGCGGGGAAACAAAACAA
AAAAAGGGTACAGACCACTCGGAAAGAGAAAACAAAATGTCAGAAAGAAA
AGAACATGTACCGCACCGACCGTTGGAGAAAAGAGCCCTCGGTAACCGAT
CAAAATACAACAAAAACAAAAACAAAAATTGTGTGTAGATGGTTCTGCTT
TGGGGCGGTGAGAGTGTTTGCCCTTCCTCGGTGCCGTTCGTTTTTTGTCG
TTATTAATTACCCTCTTTGCTTGGTGTATTTGTGTTGGAACAGTGAGGAC
CCGCGGGAGCGTGACTACCTCAAGACGATTCTCCACAGGGTATACGGGAA
GTTCATGATGCACCGAGCGTTCATCCGGCGAGCTGTCGGGAATGCGTTCC
TCAGGTCGGCAAAGAAAAGAACCACACATGTATATTTTTTTCATGTTTGA
AGTGCATGTGGGTGGCAAAACTGATATGTACGGTATGTGTTGGTGTCACT
CTGCTTGTTGTTTCATGGTTGTACGTAGCCCGTGACCTTGTTGCCTTTTG
CGAGTGTGTTGGATCTCGTCCTTGACCTAATGCGTAGACGAGGTGGGCGA
CATTCTTGCCATGGTCTAGTAGAACGGCTGGATACATCGCTTTTCGCATG
ACTATTATATCTCCATGCCAGACTTGTTCCCCACAATGCCACATGTTACT
AATGTTGGTGTACCTTCCCCATGTGATTGTCGTTCTTACCGTTGTTGCTG
CTGCTGTCGCTGTTGTATTCCGGTGCATTATTGTTATTGTTGCTGTGTTA
TCTTAATTGCCCATCTGTTTATGCATGCATTCCAACGCCCGTGGCAGGTT
TGTGTATGAGTGCCCTAGACACAATGGCATCGGGGAGTTGCTGGAGATCC
TAGGGAGCATCGTGAACGGTTTCGCGACGCCGTTGAAGAAGGAACACGGT
AAGACGGAGGGAGGGAGAAATGAAGTAGACGTACCGGGGTGACACGTGAC
GTCGATCGCCAAGCGCGTGGTTGTGCTTGTGGTTGTCCTTGTTGCTGTTG
TTGTAGAAGCGGCTGCGTGAGGTGTTGGTTGTTGTCACGCTGTTGCTGTG
TGACCTGCTGCCGCTGCTTTGTTGGCTGTTGTTGTTATATTCTGTTTGTC
TTTGTTGTAGTTGTTGTCGTTGTTACTGCTGCTGTACGAGCTCTTGTTGT
TCGTGATAACCGAATTTTCTCGGCGTCCGAGTAAGTACTCCCGTACGATG
TCTCCAGGACCCACCTCATGCTATCCGAGCCAGACTGGAAGAATACAGAG
CAAACGCGATACTCAGTTGAAACCCATCGCCGCGGGGATAGGGAGTGCCT
CAACGTTCAACACGGTGTTGAACACGTTCCTGACCGTTTTCCACACCTTT
GTGTCGTTTTGTAAAAAGTTACGGGTTGTCGCTTTTGTGACCAACAAGCA
CGTGTGAGTGAGAGTAAGACGAACATTAACGACCACCTTGTCTTGCGAAC
TCTTGTTTGTCCTGCGTGGGGGCCGGGAAATTACCCTGCGGCACATGGCG
GGCGCACCCAACAGTGGACTTCTTGCAGGTCTGCCTGCTGCCGCTGCACA
CGCCGACCATGGTCAACATCTACCACCAGCAGCTGAGCTACTGCGTGGTA
CAGTATGTGGAGAAGGAGGCGGACACGGCAACACATATCCTCAAAGTACG
AAGTCGCGGCTATCGTTTGGATTGCGGCTTGAGGTTGCAGCAGTTTCTTT
GTTATTTCGTCGAGGCTCTGGTGTGCTCAGCACCCCTATTGATGGACGGT
TTTTGCTCCTTGCCTTCTCTTTTTCCTGTCTCGTCTGGGTTCAGGTGTGC
TCAGCTGCGAGCACACGTGAACCCAGACGAGACAGGAAAAAGAGAAGGCA
AGGAGCAGTATCCCGTCTTATGTATCTATTGGGTGCTGAGCACACCGGAA
CCCAGACGAGACAACAAGAATGGAAGGCGAGGAGCAAAAACCCGTCTGAT
CAATAGAGGTGCTGGGCACACCGGATAGACAGGTTTTGTTCTCTTGCTTG
AGTGAGCACGGTTCCTCAGCAAGCAACGCCACGGCATACGTTGTAGTTCG
CTGCTGCTGTCGTCTACCGTATACCAACCATCGTGTCATGCAACGATCGA
TCGTGCTAGTCAACCATCTCCTACGATCACGCCATATGAGGCATCATCAC
GTATCAGCCACTCGCACCCTGACACGACGCTTTCGCTTTGATCACTACCC
CGCGATGGCACTCCAGAGCCTGATTCGGTTCTGGCCGTGGCGAAGCTCGA
GCAAGCAAGTGATTTTCATTAACGAGCTGGAGGAGGTGCTGGAACTGCTG
GCGGGGCCGGACCAGATAGCTGAGGTGGAGGACCAGCTCTTCAACTTGCT
GGCGCGCTGCATCTCGAGCGAACACTTCCAGGTGAGGTAGTAGCCCGGGC
TAGATCAAGCGTCATCACGCAGGGGAGAGAGTAAAAAAGGTTCGGTGGGC
GAGACCTAGCTTCGCAGCTTGGTCGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTT
TTGTCTTGACACATGTATAGTTGAAGATATCATGGATCAGANTCTTGACA
CATGTATAGTTGAAGATATCATGGATCAGACACGACAAGGTGGTAATGGG
CGGCGCAGGAGGCCTCACCCAAACAAGCCAGTACTTGCGTCGAATGATCT
GGGAAAGGGACAAATATTTATCGGATATGACATGAATCCCGATTCGCGTC
AGCAAGGAGGCCTTTTCGGCATGAGGCTTTTCCGAAACACTATACACGTT
GCGCTGGACCCCCCTCCCGTTATGCTCCGTCCTCTCGAGGACGCGTGGTC
CATGGTCTAGCAGCTTAGGCATGCGGAACGTGAGCGCCCCCCCCCCCCCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCCCCCCCCCCGA
AGATAGAAGACGATTGAAACCCCTCTCGATACGGCAGCTGTGTGTGGCGT
TTCTCCTCGTCTTGATCCCTTCTAGAAAACTGCGAAAAATAGCTAGTCTG
TGCCGGTGACGGGATGCGCAAGTGTGAGTCACGAAAGCAAAATTCACATC
CGGCAATCTTGGGACCAGTCTCAGCATACACTCAAGAGTCAAAATGCTCC
AAGTGCTGCATGGTGCGCGTTCGACGTTTTGATTTTTTCGTCGCTTGTTG
CCCATTCTTGTTGCTTTTGGTCGCAACACCCGCGCTTGTTGGTGCTCATG
TCTGGTGGTCGGCACCCGGTCACGATTATGGATAAGCTACGTATATATAC
GCTAGTTGTAACGTGATAATCGTCGTCGTAGTCGGTGGCATCGGCAGGAC
CAGCACCCACAGCATCTTTCGATGGATCTGTGGTAACAACCGCCGTGGCA
CGCGGTATTCCGTAAACTTTGAAGGTTTCAATGACTTTGTCGTCACAACT
GCCGTGACACCCTGTTTTCCGTAAACTTTGAAGGTGGCGGAACGCGCGCT
TTTCTTGTGGAACAACGAGCATCTCGTTACGGCTGGGGTCCTCTCGATGC
AGTACCCGAGCCCGCTTCTGCCAGTCATCTACGGCCCCCTTCGGGAGCGC
TCGACGCGCCACTGGAACACCACTGTGGAAGGGCTGGCCCACAACGTGCT
AAGAATGTACAACGACCAAGACGCTGCGGCATTTGAAAGGTGCGAGGTCG
AATGA

Coding sequence (CDS) from alignment at Scaffold_576:171269..176623-

>EsuBft1005_11a-0001 ID=EsuBft1005_11a-0001|Name=EsuBft1005_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=963bp|location=Sequence derived from alignment at Scaffold_576:171269..176623- (Ectocarpus subulatus male Bft15b)
ATGCCAGACGTGATCGCCATGGTGAAGGCGAATATTTGTCGAGCGTTGCC
ACCGCAGCCTGACGACTGCGATCCGGACAAAGACGAGCCTTTGCTCGAGG
AGGCCTGGCCGCACTTGCAGGTGGTGTACGAGTTCTTAGTCCGGTTTGTC
GTGTCGTCGGAGGTGGACGCGAAGCAGGCCAAGCAGTACGTGGACCAGGC
CATGTGCTTGCAGCTCGTCGATCTTTTCGACAGTGAGGACCCGCGGGAGC
GTGACTACCTCAAGACGATTCTCCACAGGGTATACGGGAAGTTCATGATG
CACCGAGCGTTCATCCGGCGAGCTGTCGGGAATGCGTTCCTCAGGTTTGT
GTATGAGTGCCCTAGACACAATGGCATCGGGGAGTTGCTGGAGATCCTAG
GGAGCATCGTGAACGGTTTCGCGACGCCGTTGAAGAAGGAACACGTGGAC
TTCTTGCAGGTCTGCCTGCTGCCGCTGCACACGCCGACCATGGTCAACAT
CTACCACCAGCAGCTGAGCTACTGCGTGGTACAGTATGTGGAGAAGGAGG
CGGACACGGCAACACATATCCTCAAAAGCCTGATTCGGTTCTGGCCGTGG
CGAAGCTCGAGCAAGCAAGTGATTTTCATTAACGAGCTGGAGGAGGTGCT
GGAACTGCTGGCGGGGCCGGACCAGATAGCTGAGGTGGAGGACCAGCTCT
TCAACTTGCTGGCGCGCTGCATCTCGAGCGAACACTTCCAGGTGGCGGAA
CGCGCGCTTTTCTTGTGGAACAACGAGCATCTCGTTACGGCTGGGGTCCT
CTCGATGCAGTACCCGAGCCCGCTTCTGCCAGTCATCTACGGCCCCCTTC
GGGAGCGCTCGACGCGCCACTGGAACACCACTGTGGAAGGGCTGGCCCAC
AACGTGCTAAGAATGTACAACGACCAAGACGCTGCGGCATTTGAAAGGTG
CGAGGTCGAATGA