|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G873 |
| ProteomeId | EsuBft1799_6 |
| Protein domains | SSF56672 |
| Protein domains | PTHR19446 |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | rna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1607 |
| Hectar predicted targeting category | other localisation |
| Evalue | 5.75e-227 |
| EggNOG OGs | COG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG rclass | RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496 |
| KEGG ko | ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437 |
| KEGG Reaction | R00851,R03875,R03938,R04866,R04867,R09380 |
| KEGG Pathway | ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202 |
| KEGG Module | M00089 |
| EC | 2.1.1.43,2.3.1.15,3.6.4.12 |
| Description | acetylation-dependent protein binding |
| COG category | BK |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| EC | 2.7.7.49 |
| EC | 3.1.21.4 |
| GO | 0003964 |
| GO | 0009036 |
| GO | 0032199 |
| GO | 0000737 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1799_6a-0001 ID=EsuBft1799_6a-0001|Name=EsuBft1799_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1607bp|location=Sequence derived from alignment at Scaffold_550:110475..112240+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAACCTCCCCCCGCCCGCCCCGGTGATTGCCATCGGGATTGGGTTTTC
GTCGCTTGGCAATTATACGTTGAGTAAAATTATCCAAGGTAGGAAAGACG
CCGGGCGTACGACATACTGTTTCTTCCTAGATGTACAAAGAGCCTACAAC
ACCGTTTGGCGCAATGGATTGTGGAAAAAGATGTGGGACATAGGGATCCG
GGGGAAAATGTGGAGGATGTTGAAAAAGATGACAGAATGCACAAGAAGTG
CAGTGATGTTGGATGGGGAAATCTCGAAGTACGTGGATATACTCCAAGGA
GTCGCACAGGGCTGTACGATGTCACCCACTCTTTTCAAGATTTACATCAA
CGACTTGATAAGGGCGGTTGAAGCAGTAAGACAGGGAGTCCAAGTAGGGG
GAAAGAGTGTGTCCGGACTGATGTTTGCAGATGATTTCGTGGGGGTATCC
GAAACACCAGAAGGGTTGCAGGAACATATAGATGCGGCAGTACGACACAC
CCGAAAATGGAGACTGTCTGCGAACGTAGGAAAATGCGTAGTGGTCTGTA
ACGAAGGCAAGAAAAATCCCGTAGAATTCAAATGGAAATGGGGGGAGGAA
GAACTACCGATAGGCAAGATGGACGAGATCCTTACGGACCCACACCTAGA
CACTAGGATTAAGAGGTGTGTTCTCTTGAATGTGATTGTACCTAAGCTAG
AGTATGCAGGAGAGGTATGGGAAGGTAACGAAAAGGCCGTCAAGCAGCTG
GAAACGGTGCAGATGGCAGCGGCCAAGAAAATACTAGGATGTTCAGGTAC
AACGAGCAACACGGTATTGGGAGCAGAACTGGGAATGTACTCTCTTCAAA
CAAAGAGAGACATGCAAAAGTTGAATTGGCAGTACAAGGTAAGTAGAATG
TCGGACGATAGACTACCAGCCATGGTTGACAAGGCAGCTTGGGGAAAAGC
GACTCCAGGGAAGAAAGGAATCAGATGGGACAAGGTGGTAGAGAGGGTTT
GGAAGGAGATAGGAGACGAGGAGGAGACATTGGACACGGAAGGGTTCGGG
GGGTTCAAGAAGAAAGTCAAGGAAATGCTAGAAAGTAGGGAGGAGGCAAC
CCTTCGGAAGAAGAGTTACTTGGACGGCCCCATGGACTACGCAAAAAAAC
TGAAGTTGCAATTTCGAGTAGGCGATCTGGACTTGCCAGAACGGAGGAAG
AGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTACGACCCTCGCAGCAAGCAAGCCCTGCAGCAGGGAGAGAAAAACAAA
AACCGCGCTNAATGGTCTAACGACTACGGCATGCACGACTATGAGTACAC
CCCCCCCTGGCCCAAAAAACAATAGAAGGCTACGACCCTCGCAGCAAGCA
AGCCCTGCAGCAGGGAGAGAAAAACAAAAACCGCGCTCTCGTGTTCGTTG
AATACAGGCACAGCAACTTGCCCGTGAACCACAACGGTCTCGGCGTTCTT
CCACCGTATTTTTTCGTTGATACTCCTTTGTTGCCGCAAGGCATCCTCTC
AAAGTGTTGTTGCCAACCAAACAACTCACACGTCTCTGCGGAGGCGCACG
TATCCTC back to topprotein sequence of EsuBft1799_6a-0001 >EsuBft1799_6 ID=EsuBft1799_6|Name=EsuBft1799_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=402bp
MNLPPPAPVIAIGIGFSSLGNYTLSKIIQGRKDAGRTTYCFFLDVQRAYN
TVWRNGLWKKMWDIGIRGKMWRMLKKMTECTRSAVMLDGEISKYVDILQG
VAQGCTMSPTLFKIYINDLIRAVEAVRQGVQVGGKSVSGLMFADDFVGVS
ETPEGLQEHIDAAVRHTRKWRLSANVGKCVVVCNEGKKNPVEFKWKWGEE
ELPIGKMDEILTDPHLDTRIKRCVLLNVIVPKLEYAGEVWEGNEKAVKQL
ETVQMAAAKKILGCSGTTSNTVLGAELGMYSLQTKRDMQKLNWQYKVSRM
SDDRLPAMVDKAAWGKATPGKKGIRWDKVVERVWKEIGDEEETLDTEGFG
GFKKKVKEMLESREEATLRKKSYLDGPMDYAKKLKLQFRVGDLDLPERRK
RX back to topmRNA from alignment at Scaffold_550:110475..112240+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1799_6a-0001 ID=EsuBft1799_6a-0001|Name=EsuBft1799_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1766bp|location=Sequence derived from alignment at Scaffold_550:110475..112240+ (Ectocarpus subulatus male Bft15b)
ATGAACCTCCCCCCGCCCGCCCCGGTGATTGCCATCGGGATTGGGTTTTC
GTCGCTTGGCAATTATACGTTGAGTAAAATTATCCAAGGTAGGAAAGACG
CCGGGCGTACGACATACTGTTTCTTCCTAGATGTACAAAGAGCCTACAAC
ACCGTTTGGCGCAATGGATTGTGGAAAAAGATGTGGGACATAGGGATCCG
GGGGAAAATGTGGAGGATGTTGAAAAAGATGACAGAATGCACAAGAAGTG
CAGTGATGTTGGATGGGGAAATCTCGAAGTACGTGGATATACTCCAAGGA
GTCGCACAGGGCTGTACGATGTCACCCACTCTTTTCAAGATTTACATCAA
CGACTTGATAAGGGCGGTTGAAGCAGTAAGACAGGGAGTCCAAGTAGGGG
GAAAGAGTGTGTCCGGACTGATGTTTGCAGATGATTTCGTGGGGGTATCC
GAAACACCAGAAGGGTTGCAGGAACATATAGATGCGGCAGTACGACACAC
CCGAAAATGGAGACTGTCTGCGAACGTAGGAAAATGCGTAGTGGTCTGTA
ACGAAGGCAAGAAAAATCCCGTAGAATTCAAATGGAAATGGGGGGAGGAA
GAACTACCGGTAGTAGACAGGTATACGTGCCTGGGAGTAGAGATTCGAAG
GAAGGAGTGCTAATGGGACGCACACATAGCAAAGTTGATCGGGAAGGGTA
AAGCTCAGATAGGCAAGATGGACGAGATCCTTACGGACCCACACCTAGAC
ACTAGGATTAAGAGGTGTGTTCTCTTGAATGTGATTGTACCTAAGCTAGA
GTATGCAGGAGAGGTATGGGAAGGTAACGAAAAGGCCGTCAAGCAGCTGG
AAACGGTGCAGATGGCAGCGGCCAAGAAAATACTAGGATGTTCAGGTACA
ACGAGCAACACGGTATTGGGAGCAGAACTGGGAATGTACTCTCTTCAAAC
AAAGAGAGACATGCAAAAGTTGAATTGGCAGTACAAGGTAAGTAGAATGT
CGGACGATAGACTACCAGCCATGGTTGACAAGGCAGCTTGGGGAAAAGCG
ACTCCAGGGAAGAAAGGAATCAGATGGGACAAGGTGGTAGAGAGGGTTTG
GAAGGAGATAGGAGACGAGGAGGAGACATTGGACACGGAAGGGTTCGGGG
GGTTCAAGAAGAAAGTCAAGGAAATGCTAGAAAGTAGGGAGGAGGCAACC
CTTCGGAAGAAGGTATGAAGCGAAGACCACTTGGAGATATACGGGAAGTT
GAAAGAAGGGATAGGGATAAAGAGTTACTTGGACGGCCCCATGGACTACG
CAAAAAAACTGAAGTTGCAATTTCGAGTAGGCGATCTGGACTTGCCAGAA
CGGAGGAAGAGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTACGACCCTCGCAGCAAGCAAGCCCTGCAGCAGGGAGAG
AAAAACAAAAACCGCGCTNAATGGTCTAACGACTACGGCATGCACGACTA
TGAGTACACCCCCCCCTGGCCCAAAAAACAATAGAAGGCTACGACCCTCG
CAGCAAGCAAGCCCTGCAGCAGGGAGAGAAAAACAAAAACCGCGCTCTCG
TGTTCGTTGAATACAGGCACAGCAACTTGCCCGTGAACCACAACGGTCTC
GGCGTTCTTCCACCGTATTTTTTCGTTGATACTCCTTTGTTGCCGCAAGG
CATCCTCTCAAAGTGTTGTTGCCAACCAAACAACTCACACGTCTCTGCGG
AGGCGCACGTATCCTC back to topCoding sequence (CDS) from alignment at Scaffold_550:110475..112240+ >EsuBft1799_6a-0001 ID=EsuBft1799_6a-0001|Name=EsuBft1799_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1206bp|location=Sequence derived from alignment at Scaffold_550:110475..112240+ (Ectocarpus subulatus male Bft15b)
ATGAACCTCCCCCCGCCCGCCCCGGTGATTGCCATCGGGATTGGGTTTTC
GTCGCTTGGCAATTATACGTTGAGTAAAATTATCCAAGGTAGGAAAGACG
CCGGGCGTACGACATACTGTTTCTTCCTAGATGTACAAAGAGCCTACAAC
ACCGTTTGGCGCAATGGATTGTGGAAAAAGATGTGGGACATAGGGATCCG
GGGGAAAATGTGGAGGATGTTGAAAAAGATGACAGAATGCACAAGAAGTG
CAGTGATGTTGGATGGGGAAATCTCGAAGTACGTGGATATACTCCAAGGA
GTCGCACAGGGCTGTACGATGTCACCCACTCTTTTCAAGATTTACATCAA
CGACTTGATAAGGGCGGTTGAAGCAGTAAGACAGGGAGTCCAAGTAGGGG
GAAAGAGTGTGTCCGGACTGATGTTTGCAGATGATTTCGTGGGGGTATCC
GAAACACCAGAAGGGTTGCAGGAACATATAGATGCGGCAGTACGACACAC
CCGAAAATGGAGACTGTCTGCGAACGTAGGAAAATGCGTAGTGGTCTGTA
ACGAAGGCAAGAAAAATCCCGTAGAATTCAAATGGAAATGGGGGGAGGAA
GAACTACCGATAGGCAAGATGGACGAGATCCTTACGGACCCACACCTAGA
CACTAGGATTAAGAGGTGTGTTCTCTTGAATGTGATTGTACCTAAGCTAG
AGTATGCAGGAGAGGTATGGGAAGGTAACGAAAAGGCCGTCAAGCAGCTG
GAAACGGTGCAGATGGCAGCGGCCAAGAAAATACTAGGATGTTCAGGTAC
AACGAGCAACACGGTATTGGGAGCAGAACTGGGAATGTACTCTCTTCAAA
CAAAGAGAGACATGCAAAAGTTGAATTGGCAGTACAAGGTAAGTAGAATG
TCGGACGATAGACTACCAGCCATGGTTGACAAGGCAGCTTGGGGAAAAGC
GACTCCAGGGAAGAAAGGAATCAGATGGGACAAGGTGGTAGAGAGGGTTT
GGAAGGAGATAGGAGACGAGGAGGAGACATTGGACACGGAAGGGTTCGGG
GGGTTCAAGAAGAAAGTCAAGGAAATGCTAGAAAGTAGGGAGGAGGCAAC
CCTTCGGAAGAAGAGTTACTTGGACGGCCCCATGGACTACGCAAAAAAAC
TGAAGTTGCAATTTCGAGTAGGCGATCTGGACTTGCCAGAACGGAGGAAG
AGGTAN back to top
|