EsuBft1799_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1799_6a-0001
Unique NameEsuBft1799_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_550contigScaffold_550:110475..112240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft1799_6
Protein domainsSSF56672
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noterna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length1607
Hectar predicted targeting categoryother localisation
Evalue5.75e-227
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Cross References
External references for this mRNA
DatabaseAccession
EC2.7.7.49
EC3.1.21.4
GO0003964
GO0009036
GO0032199
GO0000737
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_6aEsuBft1799_6aEctocarpus subulatus male Bft15bgeneScaffold_550 110475..112240 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_6a-0001-exonEsuBft1799_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_550 110475..111083 +
EsuBft1799_6a-0001-exonagat-exon-84930Ectocarpus subulatus male Bft15bexonScaffold_550 111183..111686 +
EsuBft1799_6a-0001-exonagat-exon-84931Ectocarpus subulatus male Bft15bexonScaffold_550 111747..112240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_6a-0001-cdsEsuBft1799_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_550 110475..111083 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_6a-0001-exonagat-three_prime_utr-6421Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_550 111840..112240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_6a-0001EsuBft1799_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_550 110475..111839 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1799_6a-0001 ID=EsuBft1799_6a-0001|Name=EsuBft1799_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1607bp|location=Sequence derived from alignment at Scaffold_550:110475..112240+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCTCCCCCCGCCCGCCCCGGTGATTGCCATCGGGATTGGGTTTTC
GTCGCTTGGCAATTATACGTTGAGTAAAATTATCCAAGGTAGGAAAGACG
CCGGGCGTACGACATACTGTTTCTTCCTAGATGTACAAAGAGCCTACAAC
ACCGTTTGGCGCAATGGATTGTGGAAAAAGATGTGGGACATAGGGATCCG
GGGGAAAATGTGGAGGATGTTGAAAAAGATGACAGAATGCACAAGAAGTG
CAGTGATGTTGGATGGGGAAATCTCGAAGTACGTGGATATACTCCAAGGA
GTCGCACAGGGCTGTACGATGTCACCCACTCTTTTCAAGATTTACATCAA
CGACTTGATAAGGGCGGTTGAAGCAGTAAGACAGGGAGTCCAAGTAGGGG
GAAAGAGTGTGTCCGGACTGATGTTTGCAGATGATTTCGTGGGGGTATCC
GAAACACCAGAAGGGTTGCAGGAACATATAGATGCGGCAGTACGACACAC
CCGAAAATGGAGACTGTCTGCGAACGTAGGAAAATGCGTAGTGGTCTGTA
ACGAAGGCAAGAAAAATCCCGTAGAATTCAAATGGAAATGGGGGGAGGAA
GAACTACCGATAGGCAAGATGGACGAGATCCTTACGGACCCACACCTAGA
CACTAGGATTAAGAGGTGTGTTCTCTTGAATGTGATTGTACCTAAGCTAG
AGTATGCAGGAGAGGTATGGGAAGGTAACGAAAAGGCCGTCAAGCAGCTG
GAAACGGTGCAGATGGCAGCGGCCAAGAAAATACTAGGATGTTCAGGTAC
AACGAGCAACACGGTATTGGGAGCAGAACTGGGAATGTACTCTCTTCAAA
CAAAGAGAGACATGCAAAAGTTGAATTGGCAGTACAAGGTAAGTAGAATG
TCGGACGATAGACTACCAGCCATGGTTGACAAGGCAGCTTGGGGAAAAGC
GACTCCAGGGAAGAAAGGAATCAGATGGGACAAGGTGGTAGAGAGGGTTT
GGAAGGAGATAGGAGACGAGGAGGAGACATTGGACACGGAAGGGTTCGGG
GGGTTCAAGAAGAAAGTCAAGGAAATGCTAGAAAGTAGGGAGGAGGCAAC
CCTTCGGAAGAAGAGTTACTTGGACGGCCCCATGGACTACGCAAAAAAAC
TGAAGTTGCAATTTCGAGTAGGCGATCTGGACTTGCCAGAACGGAGGAAG
AGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTACGACCCTCGCAGCAAGCAAGCCCTGCAGCAGGGAGAGAAAAACAAA
AACCGCGCTNAATGGTCTAACGACTACGGCATGCACGACTATGAGTACAC
CCCCCCCTGGCCCAAAAAACAATAGAAGGCTACGACCCTCGCAGCAAGCA
AGCCCTGCAGCAGGGAGAGAAAAACAAAAACCGCGCTCTCGTGTTCGTTG
AATACAGGCACAGCAACTTGCCCGTGAACCACAACGGTCTCGGCGTTCTT
CCACCGTATTTTTTCGTTGATACTCCTTTGTTGCCGCAAGGCATCCTCTC
AAAGTGTTGTTGCCAACCAAACAACTCACACGTCTCTGCGGAGGCGCACG
TATCCTC
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protein sequence of EsuBft1799_6a-0001

>EsuBft1799_6 ID=EsuBft1799_6|Name=EsuBft1799_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=402bp
MNLPPPAPVIAIGIGFSSLGNYTLSKIIQGRKDAGRTTYCFFLDVQRAYN
TVWRNGLWKKMWDIGIRGKMWRMLKKMTECTRSAVMLDGEISKYVDILQG
VAQGCTMSPTLFKIYINDLIRAVEAVRQGVQVGGKSVSGLMFADDFVGVS
ETPEGLQEHIDAAVRHTRKWRLSANVGKCVVVCNEGKKNPVEFKWKWGEE
ELPIGKMDEILTDPHLDTRIKRCVLLNVIVPKLEYAGEVWEGNEKAVKQL
ETVQMAAAKKILGCSGTTSNTVLGAELGMYSLQTKRDMQKLNWQYKVSRM
SDDRLPAMVDKAAWGKATPGKKGIRWDKVVERVWKEIGDEEETLDTEGFG
GFKKKVKEMLESREEATLRKKSYLDGPMDYAKKLKLQFRVGDLDLPERRK
RX
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mRNA from alignment at Scaffold_550:110475..112240+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1799_6a-0001 ID=EsuBft1799_6a-0001|Name=EsuBft1799_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1766bp|location=Sequence derived from alignment at Scaffold_550:110475..112240+ (Ectocarpus subulatus male Bft15b)
ATGAACCTCCCCCCGCCCGCCCCGGTGATTGCCATCGGGATTGGGTTTTC
GTCGCTTGGCAATTATACGTTGAGTAAAATTATCCAAGGTAGGAAAGACG
CCGGGCGTACGACATACTGTTTCTTCCTAGATGTACAAAGAGCCTACAAC
ACCGTTTGGCGCAATGGATTGTGGAAAAAGATGTGGGACATAGGGATCCG
GGGGAAAATGTGGAGGATGTTGAAAAAGATGACAGAATGCACAAGAAGTG
CAGTGATGTTGGATGGGGAAATCTCGAAGTACGTGGATATACTCCAAGGA
GTCGCACAGGGCTGTACGATGTCACCCACTCTTTTCAAGATTTACATCAA
CGACTTGATAAGGGCGGTTGAAGCAGTAAGACAGGGAGTCCAAGTAGGGG
GAAAGAGTGTGTCCGGACTGATGTTTGCAGATGATTTCGTGGGGGTATCC
GAAACACCAGAAGGGTTGCAGGAACATATAGATGCGGCAGTACGACACAC
CCGAAAATGGAGACTGTCTGCGAACGTAGGAAAATGCGTAGTGGTCTGTA
ACGAAGGCAAGAAAAATCCCGTAGAATTCAAATGGAAATGGGGGGAGGAA
GAACTACCGGTAGTAGACAGGTATACGTGCCTGGGAGTAGAGATTCGAAG
GAAGGAGTGCTAATGGGACGCACACATAGCAAAGTTGATCGGGAAGGGTA
AAGCTCAGATAGGCAAGATGGACGAGATCCTTACGGACCCACACCTAGAC
ACTAGGATTAAGAGGTGTGTTCTCTTGAATGTGATTGTACCTAAGCTAGA
GTATGCAGGAGAGGTATGGGAAGGTAACGAAAAGGCCGTCAAGCAGCTGG
AAACGGTGCAGATGGCAGCGGCCAAGAAAATACTAGGATGTTCAGGTACA
ACGAGCAACACGGTATTGGGAGCAGAACTGGGAATGTACTCTCTTCAAAC
AAAGAGAGACATGCAAAAGTTGAATTGGCAGTACAAGGTAAGTAGAATGT
CGGACGATAGACTACCAGCCATGGTTGACAAGGCAGCTTGGGGAAAAGCG
ACTCCAGGGAAGAAAGGAATCAGATGGGACAAGGTGGTAGAGAGGGTTTG
GAAGGAGATAGGAGACGAGGAGGAGACATTGGACACGGAAGGGTTCGGGG
GGTTCAAGAAGAAAGTCAAGGAAATGCTAGAAAGTAGGGAGGAGGCAACC
CTTCGGAAGAAGGTATGAAGCGAAGACCACTTGGAGATATACGGGAAGTT
GAAAGAAGGGATAGGGATAAAGAGTTACTTGGACGGCCCCATGGACTACG
CAAAAAAACTGAAGTTGCAATTTCGAGTAGGCGATCTGGACTTGCCAGAA
CGGAGGAAGAGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTACGACCCTCGCAGCAAGCAAGCCCTGCAGCAGGGAGAG
AAAAACAAAAACCGCGCTNAATGGTCTAACGACTACGGCATGCACGACTA
TGAGTACACCCCCCCCTGGCCCAAAAAACAATAGAAGGCTACGACCCTCG
CAGCAAGCAAGCCCTGCAGCAGGGAGAGAAAAACAAAAACCGCGCTCTCG
TGTTCGTTGAATACAGGCACAGCAACTTGCCCGTGAACCACAACGGTCTC
GGCGTTCTTCCACCGTATTTTTTCGTTGATACTCCTTTGTTGCCGCAAGG
CATCCTCTCAAAGTGTTGTTGCCAACCAAACAACTCACACGTCTCTGCGG
AGGCGCACGTATCCTC
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Coding sequence (CDS) from alignment at Scaffold_550:110475..112240+

>EsuBft1799_6a-0001 ID=EsuBft1799_6a-0001|Name=EsuBft1799_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1206bp|location=Sequence derived from alignment at Scaffold_550:110475..112240+ (Ectocarpus subulatus male Bft15b)
ATGAACCTCCCCCCGCCCGCCCCGGTGATTGCCATCGGGATTGGGTTTTC
GTCGCTTGGCAATTATACGTTGAGTAAAATTATCCAAGGTAGGAAAGACG
CCGGGCGTACGACATACTGTTTCTTCCTAGATGTACAAAGAGCCTACAAC
ACCGTTTGGCGCAATGGATTGTGGAAAAAGATGTGGGACATAGGGATCCG
GGGGAAAATGTGGAGGATGTTGAAAAAGATGACAGAATGCACAAGAAGTG
CAGTGATGTTGGATGGGGAAATCTCGAAGTACGTGGATATACTCCAAGGA
GTCGCACAGGGCTGTACGATGTCACCCACTCTTTTCAAGATTTACATCAA
CGACTTGATAAGGGCGGTTGAAGCAGTAAGACAGGGAGTCCAAGTAGGGG
GAAAGAGTGTGTCCGGACTGATGTTTGCAGATGATTTCGTGGGGGTATCC
GAAACACCAGAAGGGTTGCAGGAACATATAGATGCGGCAGTACGACACAC
CCGAAAATGGAGACTGTCTGCGAACGTAGGAAAATGCGTAGTGGTCTGTA
ACGAAGGCAAGAAAAATCCCGTAGAATTCAAATGGAAATGGGGGGAGGAA
GAACTACCGATAGGCAAGATGGACGAGATCCTTACGGACCCACACCTAGA
CACTAGGATTAAGAGGTGTGTTCTCTTGAATGTGATTGTACCTAAGCTAG
AGTATGCAGGAGAGGTATGGGAAGGTAACGAAAAGGCCGTCAAGCAGCTG
GAAACGGTGCAGATGGCAGCGGCCAAGAAAATACTAGGATGTTCAGGTAC
AACGAGCAACACGGTATTGGGAGCAGAACTGGGAATGTACTCTCTTCAAA
CAAAGAGAGACATGCAAAAGTTGAATTGGCAGTACAAGGTAAGTAGAATG
TCGGACGATAGACTACCAGCCATGGTTGACAAGGCAGCTTGGGGAAAAGC
GACTCCAGGGAAGAAAGGAATCAGATGGGACAAGGTGGTAGAGAGGGTTT
GGAAGGAGATAGGAGACGAGGAGGAGACATTGGACACGGAAGGGTTCGGG
GGGTTCAAGAAGAAAGTCAAGGAAATGCTAGAAAGTAGGGAGGAGGCAAC
CCTTCGGAAGAAGAGTTACTTGGACGGCCCCATGGACTACGCAAAAAAAC
TGAAGTTGCAATTTCGAGTAGGCGATCTGGACTTGCCAGAACGGAGGAAG
AGGTAN
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