EsuBft4711_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4711_2a-0001
Unique NameEsuBft4711_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_548contigScaffold_548:295569..297907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft4711_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length76
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_003030.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4711_2aEsuBft4711_2aEctocarpus subulatus male Bft15bgeneScaffold_548 295569..297907 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4711_2a-0001-exonagat-exon-31778Ectocarpus subulatus male Bft15bexonScaffold_548 295569..295901 -
EsuBft4711_2a-0001-exonagat-exon-31777Ectocarpus subulatus male Bft15bexonScaffold_548 296548..296763 -
EsuBft4711_2a-0001-exonEsuBft4711_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_548 297689..297907 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4711_2a-0001-cdsEsuBft4711_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_548 295569..295901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4711_2a-0001EsuBft4711_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_548 295569..297907 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4711_2a-0001 ID=EsuBft4711_2a-0001|Name=EsuBft4711_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=768bp|location=Sequence derived from alignment at Scaffold_548:295569..297907- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGGCAGCAGCGATCTTGTACGTCTGCGGCTGGGATTCGACGCG
CCATGCGGGGGAAAAGAAAGTTGCCGTCGATGCTACGGCCAGCAACAGCC
AGAGTGTGGGTGACGCACAGTGGGCGGCCGTTGTAGAGGGGCGAGACGAG
CCCGGCGGTGGTGATCACCCGTGGGCGGGAAAGGGGCCGGAAGGAAGCTT
TCACGAAGGGCTTGGACAGGAAACACGACAGACACCACCAGGCGGGGGTG
GTGGCCACGCAGAAAATCGGCCGCGTGGAAGAGAGGGCCGAGCCGCGGGT
GATGCGACCCCCTCATCGTTCTTGAGCGAGGGCGCCGTGAAGGCGGTCGT
CGGCACGGTGGAGAGCTACGCCGACTTCGCCAGGGGAACTCTGGAGGCAG
ACGAGCTGGCCGTACAACAAGGGCGCCCGCTGCAGGGAAAGTATATCGTG
CTGGATTCGGGAAACGAGCTCGTCAATCGCCTGCGCGGGGTGATGAGCGG
CTTCTTTCTGGGCATGTTGACGGATAGGGTGTTCGTGGCCGACATCACGT
ACCAGAAGGACGGCACACAAGGGCTGCTGAGTGCTCTGTTTGAGGGGCCG
GGATACGAGGTGCGGAAAGCGACGGCTTTTTTTATTCTTGTCCCGTCGTT
TTTACCAGTCATAACCCACGTTCACTGCTCGCCGTGGCACCGCTTTTTCC
TGCTGGGCTACGTAGTCCCGATTTCGATTGCACATGGTGTAGAAATGACT
GGTACTTGCTCGGTTTAG
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protein sequence of EsuBft4711_2a-0001

>EsuBft4711_2 ID=EsuBft4711_2|Name=EsuBft4711_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=255bp
MASAAAILYVCGWDSTRHAGEKKVAVDATASNSQSVGDAQWAAVVEGRDE
PGGGDHPWAGKGPEGSFHEGLGQETRQTPPGGGGGHAENRPRGREGRAAG
DATPSSFLSEGAVKAVVGTVESYADFARGTLEADELAVQQGRPLQGKYIV
LDSGNELVNRLRGVMSGFFLGMLTDRVFVADITYQKDGTQGLLSALFEGP
GYEVRKATAFFILVPSFLPVITHVHCSPWHRFFLLGYVVPISIAHGVEMT
GTCSV
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mRNA from alignment at Scaffold_548:295569..297907-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4711_2a-0001 ID=EsuBft4711_2a-0001|Name=EsuBft4711_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2339bp|location=Sequence derived from alignment at Scaffold_548:295569..297907- (Ectocarpus subulatus male Bft15b)
ATGGCGTCGGCAGCAGCGATCTTGTACGTCTGCGGCTGGGATTCGACGCG
CCATGCGGGGGAAAAGAAAGTTGCCGTCGATGCTACGGCCAGCAACAGCC
AGAGTGTGGGTGACGCACAGTGGGCGGCCGTTGTAGAGGGGCGAGACGAG
CCCGGCGGTGGTGATCACCCGTGGGCGGGAAAGGGGCCGGAAGGAAGCTT
TCACGAAGGGCTTGGACAGGTATGGGAAGGGTAGCGTGTCCGTGGTGTTA
TGCAGGGCTGATAGGTTATGTAGAGAGAGACTACTGTAGTGCTCAAGTGG
TGGATTGTGAAAGCACATCCTAGCGTGTTGCCTTGGTAGCAGCGGCGTTA
TGCTCGTGGTATTGTGATGTTGCGCCAGTTGTTTTGTTCGTTTTGATGGG
GCTGGAGGCTGCATGTAACATACGACCAGTGCTTATTTCCGCCGGCTCCT
GCTGGAGTGATCCGATCAAAGCCTTCCACCGTAGATCCTAGTGTCGCTAC
ACGTCAGCCAGAAAAATTCAATCTCTGCACCAACCGGACCAGCACCTTCC
AAGCCGTTAGACAAGACGCGACGGCACACCCGATCTGCTGTCGGACTGCT
GCCAGGTCAAAATCAACCAAGTACAGTATCACAACAAAACCTCGGCGATT
AAACCCGAGCCTCGAACCTGCTGTGCTACGTGGCATGACCAGATATCCTG
CCTCTTCCCTCCTTGTCCGCTGCTGATCAAAAACACCGCGCCGACTGCGC
TCCGAATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAACCATAATGGTGGCCGAGT
AGATCATGTTGTGCGGGGTGGAGAATCCTCGCTCCGCGCAAGGGGGATGA
TCGCACCACGTTGTGTTAAAATGGTCAAGCACCCTCGAGGCAGTTACACG
GTGCTTACAACTGTCTCTGGAAGTGAAGCATCCAGAAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCCCCCCCCCCACGATGGGAACATAGGAAACA
CGACAGACACCACCAGGCGGGGGTGGTGGCCACGCAGAAAATCGGCCGCG
TGGAAGAGAGGGCCGAGCCGCGGGTGATGCGACCCCCTCATCGTTCTTGA
GCGAGGGCGCCGTGAAGGCGGTCGTCGGCACGGTGGAGAGCTACGCCGAC
TTCGCCAGGGGAACTCTGGAGGCAGACGAGCTGGCCGTACAACAAGGGCG
CCCGCTGCAGGTGTACAAGTAGACGGCAGCAAAAAATGGCGGTGTGCCGT
AGGCTTGAAGAGCTATTGCTTGGATGGTGGGGCCCCGTTCAGCTTGCGTT
TGGCTTGTCATTGACCACTGGTTGTTGGCCTGGTGTGGGGCACGAGCTAC
GATTTTTCACAGCCGAGGAAGTGTTTCCGTGTGGTTGTCGTAAGCGGAGA
GAGCGCAAGGTTCGGGCCGGGGGGCATTGCGACGTCAAGCTTCACCAGAA
TATGCTCCCCCGCCGCCGCCGCCGCGTCAAGACGAAAGCACGCCGCACAT
TTTGGTGGCTGTTCTTATGACTCTATCGGGAATAGGGAACGAGGGTTCCG
CAAGTCAAGAAACAAGATGCGAGGCCCGGCGGCCTATCGCCTCGAGGAAA
CCAATGAGTGAGCTCCTCCACTACCCGCATTCCCCGCTTTGGTCGACTAT
TGCCACAACTACCACCTCCACCACCATCACCATAGTTATCATCAGCACCA
GATGTTAGCGATGTCTCCTGCGAAGGTTGTTCGGTTTGGAAAGGGGCGCG
TAGTGACTGGTCGGATCGCTGTGAGTCCAGCCACAATATCATCGCAACCC
CGATCGACCGACGGTGAGACTTCACGGCTCACCCCTTCCCTTGCTTTCCT
CGACAGGGAAAGTATATCGTGCTGGATTCGGGAAACGAGCTCGTCAATCG
CCTGCGCGGGGTGATGAGCGGCTTCTTTCTGGGCATGTTGACGGATAGGG
TGTTCGTGGCCGACATCACGTACCAGAAGGACGGCACACAAGGGCTGCTG
AGTGCTCTGTTTGAGGGGCCGGGATACGAGGTGCGGAAAGCGACGGCTTT
TTTTATTCTTGTCCCGTCGTTTTTACCAGTCATAACCCACGTTCACTGCT
CGCCGTGGCACCGCTTTTTCCTGCTGGGCTACGTAGTCCCGATTTCGATT
GCACATGGTGTAGAAATGACTGGTACTTGCTCGGTTTAG
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Coding sequence (CDS) from alignment at Scaffold_548:295569..297907-

>EsuBft4711_2a-0001 ID=EsuBft4711_2a-0001|Name=EsuBft4711_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=768bp|location=Sequence derived from alignment at Scaffold_548:295569..297907- (Ectocarpus subulatus male Bft15b)
ATGGCGTCGGCAGCAGCGATCTTGTACGTCTGCGGCTGGGATTCGACGCG
CCATGCGGGGGAAAAGAAAGTTGCCGTCGATGCTACGGCCAGCAACAGCC
AGAGTGTGGGTGACGCACAGTGGGCGGCCGTTGTAGAGGGGCGAGACGAG
CCCGGCGGTGGTGATCACCCGTGGGCGGGAAAGGGGCCGGAAGGAAGCTT
TCACGAAGGGCTTGGACAGGAAACACGACAGACACCACCAGGCGGGGGTG
GTGGCCACGCAGAAAATCGGCCGCGTGGAAGAGAGGGCCGAGCCGCGGGT
GATGCGACCCCCTCATCGTTCTTGAGCGAGGGCGCCGTGAAGGCGGTCGT
CGGCACGGTGGAGAGCTACGCCGACTTCGCCAGGGGAACTCTGGAGGCAG
ACGAGCTGGCCGTACAACAAGGGCGCCCGCTGCAGGGAAAGTATATCGTG
CTGGATTCGGGAAACGAGCTCGTCAATCGCCTGCGCGGGGTGATGAGCGG
CTTCTTTCTGGGCATGTTGACGGATAGGGTGTTCGTGGCCGACATCACGT
ACCAGAAGGACGGCACACAAGGGCTGCTGAGTGCTCTGTTTGAGGGGCCG
GGATACGAGGTGCGGAAAGCGACGGCTTTTTTTATTCTTGTCCCGTCGTT
TTTACCAGTCATAACCCACGTTCACTGCTCGCCGTGGCACCGCTTTTTCC
TGCTGGGCTACGTAGTCCCGATTTCGATTGCACATGGTGTAGAAATGACT
GGTACTTGCTCGGTTTAG
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