EsuBft986_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft986_7a-0001
Unique NameEsuBft986_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_548contigScaffold_548:94653..98560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FSK2
ProteomeIdEsuBft986_7
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsIPR006912
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsPTHR22930
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length210
Hectar predicted targeting categorysignal peptide
Evalue5.7e-113
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionPlant transposon protein
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0016788
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft986_7aEsuBft986_7aEctocarpus subulatus male Bft15bgeneScaffold_548 94653..98560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_7a-0001EsuBft986_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_548 95117..98276 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_7a-0001-exonagat-exon-55049Ectocarpus subulatus male Bft15bexonScaffold_548 94653..94748 -
EsuBft986_7a-0001-exonagat-exon-55048Ectocarpus subulatus male Bft15bexonScaffold_548 94888..95560 -
EsuBft986_7a-0001-exonagat-exon-55050Ectocarpus subulatus male Bft15bexonScaffold_548 96126..96653 -
EsuBft986_7a-0001-exonEsuBft986_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_548 97755..98560 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_7a-0001-exonagat-three_prime_utr-23802Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_548 94653..94748 -
EsuBft986_7a-0001-exonagat-three_prime_utr-23803Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_548 94888..95116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_7a-0001-cdsEsuBft986_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_548 95117..95560 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_7a-0001-exonagat-five_prime_utr-15513Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_548 98277..98560 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft986_7a-0001 ID=EsuBft986_7a-0001|Name=EsuBft986_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2103bp|location=Sequence derived from alignment at Scaffold_548:94653..98560- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTGTTTCTTATAGAGCCGGATTCTTGACCTGAAAAACCTCAAAATCCCG
ATATGGCCAAAATCGGGATTCTTATAGACCCGGATTCTTTAGTTTTTCGG
GTCAACATTTTCCAGTTTCAGAAATCCGGTCGACTTTCACCCGGATTCTG
ATGCAGAATCCGGGTGAAAGCCCAACCGGATTTTCTCACCCGAAAAATTC
AATTCAAACGCTGGTTACGCCGCCCGGCTCACACACACACGCACACACAC
AGCACAGCACAGCACAATACAGCGGCTACCGCAGATGCGTGTCGCAGTGC
CGGCGCTCTTAGGGCTGCTGGGCGTCGCCCGCCTCGGCTGTGCACTTGTA
TTGCCCGCGGGACGTGTGGTTCACCGCCAAATGGCCGAGACAGCAACCGA
AAGTGGTGGTATCGATGTGCCGGCTGCCTTCGCCACCACGGCGGTAGCTA
CTGCCTCCCTGCAGCAGCTGCAACGTAGCGTCGCCGTCTGGGACGTTATC
ATGGAAGACTTCGAAGACGATCTAGAGCTGGATACAGAGGACGATGAAGC
GTCGAGGGAGGTGAAGAGGCGGCGTGTGTACGTTCGTAAAGACTACACGA
AGTCGGGATGGTGGCAGGAGCTCATGGAGCTGCGAGAGACAGGCGAGACA
GATCACACGACCCGGGAAGCGCGGCGTTTTCGCAACAACTTCCGCGTCCC
CTACCCGTTTTTCGTGCACTTGGTGGAGCTGGTGAGGGACAGAGACTGGT
TCCCAACCGGGGAGTCGGATGTCACGGGTCGCCAAGCCGTCCCTGTTGAG
TTGAAGGTGCTGGCCTGTCTGCAGATACTCAGCAGAGGAAATGTGTTCGC
AGATATCTACCACATGTCCTTCATCAGCTTTCAGACGGTGGCGTCCACCT
TCCACCGCTTCTGCAAGTACTTCGCGGCGGAGCTGTACGACGAATATGTC
TACCTGCCGACTGGGGAGGACCTGAGGAAAGTCATGGAGCAGTACGATCG
CATAGGTTTCCCCGGAGCCGTCGGGTCCACGGACGTCACCCACATCTACT
GGGGCATGTGCCCCTACAACCAAGCCCGCATTTATACGGGCAAAGAGGGG
AAGCCTACCGTCGCTTTTCAAGTTACGGTGGACCATAGCGGGCGCGTTCT
GGCGGTGACCCGAGGGTTTACGGGGGCGACGAACGACAAGACCATCATCC
GCTACGACAAGGCGGTGACGCGCATCCGGACGGATCCTGTGTATACGGAG
CAGAAGTACAAGCTGTACGCGCAGGATGGACAGCAGTTCGAGGAAAAGGG
GTGCTATCTGCTGGTGGACAATGGGTACCACAAGTGGAGGACTCTCATTC
CCCCTTCCAAGTGCCCGATCGACCGTGGCGACCTCATCTTCTCGAAGAGG
CTCGAGAGCGCTCGCAAGGACGTCGAATGCTACTTCGGGATCCTCAAAGG
GCGCTTTCGAATCAACAAGCTGGCCATCGGCTTTCACAAGCAGGAATACA
TCGACAACGTGTTCTTCACCTGCTGCATCCTCCACAACATGCTGCACAGC
TTCGACAACCGGGGGGACATGAGCGAGGAGCCCAACTGGGCTGGGAGCGC
CGGCCTGCACAACGCCGCGGATCGCGACCCCAACACGGACTACAGCTCGG
TCGGGTCAATGGACGGTCAGCATGAGGCGGTCGAGGTGGAGACGGGCTTC
GGGGCGCTGCGGTCTAAGTTGGTTACGAACTTCGTGTACCGCAGGGAAAA
GAAGAGGGACATTGTGTGGCTGTCGTAGGGGAGGAAGGCGGTGCTGTTCT
GGCCGTAGGTTTGACTCTAGGGTAACCATGTGCGAGCGTTGTGACGGTTA
TTTTTGCGGCAACAACGCGTTCGTGCACGTATATACAAGCTCACAGCCGG
GAGATTGGTGGGGGTGGCGGGCAGCCAATTTCAGCAACACGTAGCATCGG
CTGTGTGTACGGGCGCGGACTTTTTTTCGAAGTTTCACCAGAACACATAA
CTGAAACCGATACGCAGGGATTCGCAGCCTGTGTCATGTGTACGTTGTCA
TCGGCGTGTACACGAAGCGGCCGCTCTTTCGAGTCCAAACCTGGACTTCG
GGG
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protein sequence of EsuBft986_7a-0001

>EsuBft986_7 ID=EsuBft986_7|Name=EsuBft986_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=497bp
MRVAVPALLGLLGVARLGCALVLPAGRVVHRQMAETATESGGIDVPAAFA
TTAVATASLQQLQRSVAVWDVIMEDFEDDLELDTEDDEASREVKRRRVYV
RKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELV
RDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQ
TVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTD
VTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATN
DKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHK
WRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGF
HKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNAADRDPN
TDYSSVGSMDGQHEAVEVETGFGALRSKLVTNFVYRREKKRDIVWLS
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mRNA from alignment at Scaffold_548:94653..98560-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft986_7a-0001 ID=EsuBft986_7a-0001|Name=EsuBft986_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3908bp|location=Sequence derived from alignment at Scaffold_548:94653..98560- (Ectocarpus subulatus male Bft15b)
GCTGTTTCTTATAGAGCCGGATTCTTGACCTGAAAAACCTCAAAATCCCG
ATATGGCCAAAATCGGGATTCTTATAGACCCGGATTCTTTAGTTTTTCGG
GTCAACATTTTCCAGTTTCAGAAATCCGGTCGACTTTCACCCGGATTCTG
ATGCAGAATCCGGGTGAAAGCCCAACCGGATTTTCTCACCCGAAAAATTC
AATTCAAACGCTGGTTACGCCGCCCGGCTCACACACACACGCACACACAC
AGCACAGCACAGCACAATACAGCGGCTACCGCAGATGCGTGTCGCAGTGC
CGGCGCTCTTAGGGCTGCTGGGCGTCGCCCGCCTCGGCTGTGCACTTGTA
TTGCCCGCGGGACGTGTGGTTCACCGCCAAATGGCCGAGACAGCAACCGA
AAGTGGTGGTATCGATGTGCCGGCTGCCTTCGCCACCACGGCGGTAGCTA
CTGCCTCCCTGCAGCAGCTGCAACGTAGCGTCGCCGTCTGGGACGTTATC
ATGGAAGACTTCGAAGACGATCTAGAGCTGGATACAGAGGACGATGAAGC
GTCGAGGGAGGTGAAGAGGCGGCGTGTGTACGTTCGTAAAGACTACACGA
AGTCGGGATGGTGGCAGGAGCTCATGGAGCTGCGAGAGACAGGCGAGACA
GATCACACGACCCGGGAAGCGCGGCGTTTTCGCAACAACTTCCGCGTCCC
CTACCCGTTTTTCGTGCACTTGGTGGAGCTGGTGAGGGACAGAGACTGGT
TCCCAACCGGGGAGTCGGATGTCACGGGTCGCCAAGCCGTCCCTGTTGAG
TTGAAGGTGAGCAAAGACGATGAAATGCTGCACTTCTCGAAAAATGGACC
GCTGGCACCGGAGTGCCGGCGGCGGCACAGCATGCGTTTGAAAGGTGTAC
ACCGATAAGGGCTGTGGCTGCGATCTGCTCTATATCCCTTGTCCGCCTCT
ACCCCAGTACATTGGGTGGTGCGCATGCATTCTTCGTTGTTCTGCACACT
TCGTGCCTAGTCTTAAGTTCATTTAAAAGGTTGAGTCCCTCCCTTGTAGC
CGGATGAAAAAAAACCTCATGTTTTGAAATGGTCCGCCGTCGCATAGAGC
GCCGGCCGCACCACGGTCGGCGCTGGTTTCGAATACATAAGGTGTACAAC
GTAGAGGGTGGTTGCTGCTGTGCTGTACACCCCTTTTCTCCAGCATTCAT
CATCTACAGCGGCCGCGTGTGGTGCGCATGTATACTTCGTTCCTCTCCAC
ACTTTCGTCTAAAGTTGGTTTAGAAGACCCGACCACAGCAGCAGTGGGAG
TCCTCTCCCTTGTTGCCGGCGCTGGTCGGCAGTAGGGTGGTACAACATGT
ACAGCAGTCGAAAACAAAACAAAACGTTGGCAACCGCTAGGGCGAAGCCA
GGGGTTGTTTTGCACGCGGGTCAGTTTACTGTCACCAGCCACCATGTGCT
CACAAGCCAACAATGCAAACGTAGAGAGAAACACGCCGCGCGCAAGCCAC
AGCAGTGTCGTGGTCAAGCGTGTTAAACTCTCGAATGGTCAACTGCCGAG
TGTGTGACAAACCAGCACAGCCCCGGGGTTGTTGTAGAGGTTGGAAAAAA
TCAATTGCGACCTACATGCTCCATGATAGAGGCCGGCCGATGGCGTACAG
TTTTCAAAATGTTGAACGTTGAGGCAGCCACCAAGAAACAAAAAAACAAG
CTAACACTCAGCGTAGCTGCTGCAGCTGCCCCTGTCGCGAGCGCAGGGGT
GACTGCGGCGCGCGCGTACGCCACTCATATTTTCAATTTTCCGCAGGGGA
CCCGCGGCCTGAGTATATTTCCTGAGTTCAAAGCTAAGAACGCTGTTCCT
CACGAAAAAGCAACGGATTTATCCGCGCGTTGTTGCTTTCCTCCGCCGCA
TACGCAGGTGCTGGCCTGTCTGCAGATACTCAGCAGAGGAAATGTGTTCG
CAGATATCTACCACATGTCCTTCATCAGCTTTCAGACGGTGGCGTCCACC
TTCCACCGCTTCTGCAAGTACTTCGCGGCGGAGCTGTACGACGAATATGT
CTACCTGCCGACTGGGGAGGACCTGAGGAAAGTCATGGAGCAGTACGATC
GCATAGGTTTCCCCGGAGCCGTCGGGTCCACGGACGTCACCCACATCTAC
TGGGGCATGTGCCCCTACAACCAAGCCCGCATTTATACGGGCAAAGAGGG
GAAGCCTACCGTCGCTTTTCAAGTTACGGTGGACCATAGCGGGCGCGTTC
TGGCGGTGACCCGAGGGTTTACGGGGGCGACGAACGACAAGACCATCATC
CGCTACGACAAGGCGGTGACGCGCATCCGGACGGATCCTGTGTATACGGA
GCAGAAGTACAAGCTGTACGCGCAGGATGGACAGCAGTTCGAGGAAAAGG
GGTGCTATCTGCTGGTGGACAATGGGTACCACAAGGTGAATCTTCGACGA
GGAGAGAGCCCCGAGTGTGTGTCGTGTGTGTGTGCGCGCTGTGTGTGTGT
GCGTGTTGAGTGTGTGTCAATGCGTACCGCCGTCTCGTACGTGTACGTAT
CTAGTATCTACCATCTTTTTCCTATTTTCCTGGTAGTTGCCAGCGGCGCT
TTTTGCATTTTTTTTTGTTCTTGGTAAGCGGCCGGAACAGTTTCTGCAAC
CTTCTGTGCGTCGCCGGGGAAAGAAAGAAACACTTGCCCAGACGGGTTCG
TCTCCGGAAGTTCGATTTTTTGTGATGTTTGATTCCGCGACAGCAGTCAA
CTAGGCCCTCTGCGGCGCGGCGTTGGCAGATTGCGGCTTCTCTTGTAAAG
AAAAATACCAACCACTTGACAACACCAATACAAGGAGAGAAAGGTCCGCG
GTATTGGAGAAATCCTTGGCGTGAGAACACTATGAGGTCTTAACCGCGTG
CTTAATTCTCTTCCCCTCTACCTCTGCCCGTTGCCCTCTTGCTCTCCCGC
CCGCCCGCCCCCCCGCTCTTCCCCGCAAACTACCCCTTCCCTTCCGACAG
TGGAGGACTCTCATTCCCCCTTCCAAGTGCCCGATCGACCGTGGCGACCT
CATCTTCTCGAAGAGGCTCGAGAGCGCTCGCAAGGACGTCGAATGCTACT
TCGGGATCCTCAAAGGGCGCTTTCGAATCAACAAGCTGGCCATCGGCTTT
CACAAGCAGGAATACATCGACAACGTGTTCTTCACCTGCTGCATCCTCCA
CAACATGCTGCACAGCTTCGACAACCGGGGGGACATGAGCGAGGAGCCCA
ACTGGGCTGGGAGCGCCGGCCTGCACAACGCCGCGGATCGCGACCCCAAC
ACGGACTACAGCTCGGTCGGGTCAATGGACGGTCAGCATGAGGCGGTCGA
GGTGGAGACGGGCTTCGGGGCGCTGCGGTCTAAGTTGGTTACGAACTTCG
TGTACCGCAGGGAAAAGAAGAGGGACATTGTGTGGCTGTCGTAGGGGAGG
AAGGCGGTGCTGTTCTGGCCGTAGGTTTGACTCTAGGGTAACCATGTGCG
AGCGTTGTGACGGTTATTTTTGCGGCAACAACGCGTTCGTGCACGTATAT
ACAAGCTCACAGCCGGGAGATTGGTGGGGGTGGCGGGCAGCCAATTTCAG
CAACACGTAGCATCGGCTGTGTGTACGGGCGCGGACTTTTTTTCGAAGTT
TCACCAGAACACATAACTGAAACGTAGCGATACGCAGGGATTCACAGTTT
CGAAGTAGGGATTCACAGTTTCGAAGTTTCATCAGAACAAAACACTGAAA
CGTGGCGATACGCAGGGATTCACAGTTTCGAAGTTTCATCAGAACCAAAT
ACTGAAACGTAGCGATACGCAGGGATTCGCAGCCTGTGTCATGTGTACGT
TGTCATCGGCGTGTACACGAAGCGGCCGCTCTTTCGAGTCCAAACCTGGA
CTTCGGGG
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Coding sequence (CDS) from alignment at Scaffold_548:94653..98560-

>EsuBft986_7a-0001 ID=EsuBft986_7a-0001|Name=EsuBft986_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1494bp|location=Sequence derived from alignment at Scaffold_548:94653..98560- (Ectocarpus subulatus male Bft15b)
ATGCGTGTCGCAGTGCCGGCGCTCTTAGGGCTGCTGGGCGTCGCCCGCCT
CGGCTGTGCACTTGTATTGCCCGCGGGACGTGTGGTTCACCGCCAAATGG
CCGAGACAGCAACCGAAAGTGGTGGTATCGATGTGCCGGCTGCCTTCGCC
ACCACGGCGGTAGCTACTGCCTCCCTGCAGCAGCTGCAACGTAGCGTCGC
CGTCTGGGACGTTATCATGGAAGACTTCGAAGACGATCTAGAGCTGGATA
CAGAGGACGATGAAGCGTCGAGGGAGGTGAAGAGGCGGCGTGTGTACGTT
CGTAAAGACTACACGAAGTCGGGATGGTGGCAGGAGCTCATGGAGCTGCG
AGAGACAGGCGAGACAGATCACACGACCCGGGAAGCGCGGCGTTTTCGCA
ACAACTTCCGCGTCCCCTACCCGTTTTTCGTGCACTTGGTGGAGCTGGTG
AGGGACAGAGACTGGTTCCCAACCGGGGAGTCGGATGTCACGGGTCGCCA
AGCCGTCCCTGTTGAGTTGAAGGTGCTGGCCTGTCTGCAGATACTCAGCA
GAGGAAATGTGTTCGCAGATATCTACCACATGTCCTTCATCAGCTTTCAG
ACGGTGGCGTCCACCTTCCACCGCTTCTGCAAGTACTTCGCGGCGGAGCT
GTACGACGAATATGTCTACCTGCCGACTGGGGAGGACCTGAGGAAAGTCA
TGGAGCAGTACGATCGCATAGGTTTCCCCGGAGCCGTCGGGTCCACGGAC
GTCACCCACATCTACTGGGGCATGTGCCCCTACAACCAAGCCCGCATTTA
TACGGGCAAAGAGGGGAAGCCTACCGTCGCTTTTCAAGTTACGGTGGACC
ATAGCGGGCGCGTTCTGGCGGTGACCCGAGGGTTTACGGGGGCGACGAAC
GACAAGACCATCATCCGCTACGACAAGGCGGTGACGCGCATCCGGACGGA
TCCTGTGTATACGGAGCAGAAGTACAAGCTGTACGCGCAGGATGGACAGC
AGTTCGAGGAAAAGGGGTGCTATCTGCTGGTGGACAATGGGTACCACAAG
TGGAGGACTCTCATTCCCCCTTCCAAGTGCCCGATCGACCGTGGCGACCT
CATCTTCTCGAAGAGGCTCGAGAGCGCTCGCAAGGACGTCGAATGCTACT
TCGGGATCCTCAAAGGGCGCTTTCGAATCAACAAGCTGGCCATCGGCTTT
CACAAGCAGGAATACATCGACAACGTGTTCTTCACCTGCTGCATCCTCCA
CAACATGCTGCACAGCTTCGACAACCGGGGGGACATGAGCGAGGAGCCCA
ACTGGGCTGGGAGCGCCGGCCTGCACAACGCCGCGGATCGCGACCCCAAC
ACGGACTACAGCTCGGTCGGGTCAATGGACGGTCAGCATGAGGCGGTCGA
GGTGGAGACGGGCTTCGGGGCGCTGCGGTCTAAGTTGGTTACGAACTTCG
TGTACCGCAGGGAAAAGAAGAGGGACATTGTGTGGCTGTCGTAG
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