Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FSK2 |
| ProteomeId | EsuBft986_7 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SignalP-noTM |
| Protein domains | IPR006912 |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | PTHR22930 |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 210 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 5.7e-113 |
| EggNOG OGs | 2E2RF@1|root,2S9YA@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Plant transposon protein |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0016788 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft986_7a-0001 ID=EsuBft986_7a-0001|Name=EsuBft986_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2103bp|location=Sequence derived from alignment at Scaffold_548:94653..98560- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCTGTTTCTTATAGAGCCGGATTCTTGACCTGAAAAACCTCAAAATCCCG
ATATGGCCAAAATCGGGATTCTTATAGACCCGGATTCTTTAGTTTTTCGG
GTCAACATTTTCCAGTTTCAGAAATCCGGTCGACTTTCACCCGGATTCTG
ATGCAGAATCCGGGTGAAAGCCCAACCGGATTTTCTCACCCGAAAAATTC
AATTCAAACGCTGGTTACGCCGCCCGGCTCACACACACACGCACACACAC
AGCACAGCACAGCACAATACAGCGGCTACCGCAGATGCGTGTCGCAGTGC
CGGCGCTCTTAGGGCTGCTGGGCGTCGCCCGCCTCGGCTGTGCACTTGTA
TTGCCCGCGGGACGTGTGGTTCACCGCCAAATGGCCGAGACAGCAACCGA
AAGTGGTGGTATCGATGTGCCGGCTGCCTTCGCCACCACGGCGGTAGCTA
CTGCCTCCCTGCAGCAGCTGCAACGTAGCGTCGCCGTCTGGGACGTTATC
ATGGAAGACTTCGAAGACGATCTAGAGCTGGATACAGAGGACGATGAAGC
GTCGAGGGAGGTGAAGAGGCGGCGTGTGTACGTTCGTAAAGACTACACGA
AGTCGGGATGGTGGCAGGAGCTCATGGAGCTGCGAGAGACAGGCGAGACA
GATCACACGACCCGGGAAGCGCGGCGTTTTCGCAACAACTTCCGCGTCCC
CTACCCGTTTTTCGTGCACTTGGTGGAGCTGGTGAGGGACAGAGACTGGT
TCCCAACCGGGGAGTCGGATGTCACGGGTCGCCAAGCCGTCCCTGTTGAG
TTGAAGGTGCTGGCCTGTCTGCAGATACTCAGCAGAGGAAATGTGTTCGC
AGATATCTACCACATGTCCTTCATCAGCTTTCAGACGGTGGCGTCCACCT
TCCACCGCTTCTGCAAGTACTTCGCGGCGGAGCTGTACGACGAATATGTC
TACCTGCCGACTGGGGAGGACCTGAGGAAAGTCATGGAGCAGTACGATCG
CATAGGTTTCCCCGGAGCCGTCGGGTCCACGGACGTCACCCACATCTACT
GGGGCATGTGCCCCTACAACCAAGCCCGCATTTATACGGGCAAAGAGGGG
AAGCCTACCGTCGCTTTTCAAGTTACGGTGGACCATAGCGGGCGCGTTCT
GGCGGTGACCCGAGGGTTTACGGGGGCGACGAACGACAAGACCATCATCC
GCTACGACAAGGCGGTGACGCGCATCCGGACGGATCCTGTGTATACGGAG
CAGAAGTACAAGCTGTACGCGCAGGATGGACAGCAGTTCGAGGAAAAGGG
GTGCTATCTGCTGGTGGACAATGGGTACCACAAGTGGAGGACTCTCATTC
CCCCTTCCAAGTGCCCGATCGACCGTGGCGACCTCATCTTCTCGAAGAGG
CTCGAGAGCGCTCGCAAGGACGTCGAATGCTACTTCGGGATCCTCAAAGG
GCGCTTTCGAATCAACAAGCTGGCCATCGGCTTTCACAAGCAGGAATACA
TCGACAACGTGTTCTTCACCTGCTGCATCCTCCACAACATGCTGCACAGC
TTCGACAACCGGGGGGACATGAGCGAGGAGCCCAACTGGGCTGGGAGCGC
CGGCCTGCACAACGCCGCGGATCGCGACCCCAACACGGACTACAGCTCGG
TCGGGTCAATGGACGGTCAGCATGAGGCGGTCGAGGTGGAGACGGGCTTC
GGGGCGCTGCGGTCTAAGTTGGTTACGAACTTCGTGTACCGCAGGGAAAA
GAAGAGGGACATTGTGTGGCTGTCGTAGGGGAGGAAGGCGGTGCTGTTCT
GGCCGTAGGTTTGACTCTAGGGTAACCATGTGCGAGCGTTGTGACGGTTA
TTTTTGCGGCAACAACGCGTTCGTGCACGTATATACAAGCTCACAGCCGG
GAGATTGGTGGGGGTGGCGGGCAGCCAATTTCAGCAACACGTAGCATCGG
CTGTGTGTACGGGCGCGGACTTTTTTTCGAAGTTTCACCAGAACACATAA
CTGAAACCGATACGCAGGGATTCGCAGCCTGTGTCATGTGTACGTTGTCA
TCGGCGTGTACACGAAGCGGCCGCTCTTTCGAGTCCAAACCTGGACTTCG
GGG back to topprotein sequence of EsuBft986_7a-0001 >EsuBft986_7 ID=EsuBft986_7|Name=EsuBft986_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=497bp
MRVAVPALLGLLGVARLGCALVLPAGRVVHRQMAETATESGGIDVPAAFA
TTAVATASLQQLQRSVAVWDVIMEDFEDDLELDTEDDEASREVKRRRVYV
RKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELV
RDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQ
TVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTD
VTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATN
DKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHK
WRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGF
HKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNAADRDPN
TDYSSVGSMDGQHEAVEVETGFGALRSKLVTNFVYRREKKRDIVWLS back to topmRNA from alignment at Scaffold_548:94653..98560- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft986_7a-0001 ID=EsuBft986_7a-0001|Name=EsuBft986_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3908bp|location=Sequence derived from alignment at Scaffold_548:94653..98560- (Ectocarpus subulatus male Bft15b)
GCTGTTTCTTATAGAGCCGGATTCTTGACCTGAAAAACCTCAAAATCCCG
ATATGGCCAAAATCGGGATTCTTATAGACCCGGATTCTTTAGTTTTTCGG
GTCAACATTTTCCAGTTTCAGAAATCCGGTCGACTTTCACCCGGATTCTG
ATGCAGAATCCGGGTGAAAGCCCAACCGGATTTTCTCACCCGAAAAATTC
AATTCAAACGCTGGTTACGCCGCCCGGCTCACACACACACGCACACACAC
AGCACAGCACAGCACAATACAGCGGCTACCGCAGATGCGTGTCGCAGTGC
CGGCGCTCTTAGGGCTGCTGGGCGTCGCCCGCCTCGGCTGTGCACTTGTA
TTGCCCGCGGGACGTGTGGTTCACCGCCAAATGGCCGAGACAGCAACCGA
AAGTGGTGGTATCGATGTGCCGGCTGCCTTCGCCACCACGGCGGTAGCTA
CTGCCTCCCTGCAGCAGCTGCAACGTAGCGTCGCCGTCTGGGACGTTATC
ATGGAAGACTTCGAAGACGATCTAGAGCTGGATACAGAGGACGATGAAGC
GTCGAGGGAGGTGAAGAGGCGGCGTGTGTACGTTCGTAAAGACTACACGA
AGTCGGGATGGTGGCAGGAGCTCATGGAGCTGCGAGAGACAGGCGAGACA
GATCACACGACCCGGGAAGCGCGGCGTTTTCGCAACAACTTCCGCGTCCC
CTACCCGTTTTTCGTGCACTTGGTGGAGCTGGTGAGGGACAGAGACTGGT
TCCCAACCGGGGAGTCGGATGTCACGGGTCGCCAAGCCGTCCCTGTTGAG
TTGAAGGTGAGCAAAGACGATGAAATGCTGCACTTCTCGAAAAATGGACC
GCTGGCACCGGAGTGCCGGCGGCGGCACAGCATGCGTTTGAAAGGTGTAC
ACCGATAAGGGCTGTGGCTGCGATCTGCTCTATATCCCTTGTCCGCCTCT
ACCCCAGTACATTGGGTGGTGCGCATGCATTCTTCGTTGTTCTGCACACT
TCGTGCCTAGTCTTAAGTTCATTTAAAAGGTTGAGTCCCTCCCTTGTAGC
CGGATGAAAAAAAACCTCATGTTTTGAAATGGTCCGCCGTCGCATAGAGC
GCCGGCCGCACCACGGTCGGCGCTGGTTTCGAATACATAAGGTGTACAAC
GTAGAGGGTGGTTGCTGCTGTGCTGTACACCCCTTTTCTCCAGCATTCAT
CATCTACAGCGGCCGCGTGTGGTGCGCATGTATACTTCGTTCCTCTCCAC
ACTTTCGTCTAAAGTTGGTTTAGAAGACCCGACCACAGCAGCAGTGGGAG
TCCTCTCCCTTGTTGCCGGCGCTGGTCGGCAGTAGGGTGGTACAACATGT
ACAGCAGTCGAAAACAAAACAAAACGTTGGCAACCGCTAGGGCGAAGCCA
GGGGTTGTTTTGCACGCGGGTCAGTTTACTGTCACCAGCCACCATGTGCT
CACAAGCCAACAATGCAAACGTAGAGAGAAACACGCCGCGCGCAAGCCAC
AGCAGTGTCGTGGTCAAGCGTGTTAAACTCTCGAATGGTCAACTGCCGAG
TGTGTGACAAACCAGCACAGCCCCGGGGTTGTTGTAGAGGTTGGAAAAAA
TCAATTGCGACCTACATGCTCCATGATAGAGGCCGGCCGATGGCGTACAG
TTTTCAAAATGTTGAACGTTGAGGCAGCCACCAAGAAACAAAAAAACAAG
CTAACACTCAGCGTAGCTGCTGCAGCTGCCCCTGTCGCGAGCGCAGGGGT
GACTGCGGCGCGCGCGTACGCCACTCATATTTTCAATTTTCCGCAGGGGA
CCCGCGGCCTGAGTATATTTCCTGAGTTCAAAGCTAAGAACGCTGTTCCT
CACGAAAAAGCAACGGATTTATCCGCGCGTTGTTGCTTTCCTCCGCCGCA
TACGCAGGTGCTGGCCTGTCTGCAGATACTCAGCAGAGGAAATGTGTTCG
CAGATATCTACCACATGTCCTTCATCAGCTTTCAGACGGTGGCGTCCACC
TTCCACCGCTTCTGCAAGTACTTCGCGGCGGAGCTGTACGACGAATATGT
CTACCTGCCGACTGGGGAGGACCTGAGGAAAGTCATGGAGCAGTACGATC
GCATAGGTTTCCCCGGAGCCGTCGGGTCCACGGACGTCACCCACATCTAC
TGGGGCATGTGCCCCTACAACCAAGCCCGCATTTATACGGGCAAAGAGGG
GAAGCCTACCGTCGCTTTTCAAGTTACGGTGGACCATAGCGGGCGCGTTC
TGGCGGTGACCCGAGGGTTTACGGGGGCGACGAACGACAAGACCATCATC
CGCTACGACAAGGCGGTGACGCGCATCCGGACGGATCCTGTGTATACGGA
GCAGAAGTACAAGCTGTACGCGCAGGATGGACAGCAGTTCGAGGAAAAGG
GGTGCTATCTGCTGGTGGACAATGGGTACCACAAGGTGAATCTTCGACGA
GGAGAGAGCCCCGAGTGTGTGTCGTGTGTGTGTGCGCGCTGTGTGTGTGT
GCGTGTTGAGTGTGTGTCAATGCGTACCGCCGTCTCGTACGTGTACGTAT
CTAGTATCTACCATCTTTTTCCTATTTTCCTGGTAGTTGCCAGCGGCGCT
TTTTGCATTTTTTTTTGTTCTTGGTAAGCGGCCGGAACAGTTTCTGCAAC
CTTCTGTGCGTCGCCGGGGAAAGAAAGAAACACTTGCCCAGACGGGTTCG
TCTCCGGAAGTTCGATTTTTTGTGATGTTTGATTCCGCGACAGCAGTCAA
CTAGGCCCTCTGCGGCGCGGCGTTGGCAGATTGCGGCTTCTCTTGTAAAG
AAAAATACCAACCACTTGACAACACCAATACAAGGAGAGAAAGGTCCGCG
GTATTGGAGAAATCCTTGGCGTGAGAACACTATGAGGTCTTAACCGCGTG
CTTAATTCTCTTCCCCTCTACCTCTGCCCGTTGCCCTCTTGCTCTCCCGC
CCGCCCGCCCCCCCGCTCTTCCCCGCAAACTACCCCTTCCCTTCCGACAG
TGGAGGACTCTCATTCCCCCTTCCAAGTGCCCGATCGACCGTGGCGACCT
CATCTTCTCGAAGAGGCTCGAGAGCGCTCGCAAGGACGTCGAATGCTACT
TCGGGATCCTCAAAGGGCGCTTTCGAATCAACAAGCTGGCCATCGGCTTT
CACAAGCAGGAATACATCGACAACGTGTTCTTCACCTGCTGCATCCTCCA
CAACATGCTGCACAGCTTCGACAACCGGGGGGACATGAGCGAGGAGCCCA
ACTGGGCTGGGAGCGCCGGCCTGCACAACGCCGCGGATCGCGACCCCAAC
ACGGACTACAGCTCGGTCGGGTCAATGGACGGTCAGCATGAGGCGGTCGA
GGTGGAGACGGGCTTCGGGGCGCTGCGGTCTAAGTTGGTTACGAACTTCG
TGTACCGCAGGGAAAAGAAGAGGGACATTGTGTGGCTGTCGTAGGGGAGG
AAGGCGGTGCTGTTCTGGCCGTAGGTTTGACTCTAGGGTAACCATGTGCG
AGCGTTGTGACGGTTATTTTTGCGGCAACAACGCGTTCGTGCACGTATAT
ACAAGCTCACAGCCGGGAGATTGGTGGGGGTGGCGGGCAGCCAATTTCAG
CAACACGTAGCATCGGCTGTGTGTACGGGCGCGGACTTTTTTTCGAAGTT
TCACCAGAACACATAACTGAAACGTAGCGATACGCAGGGATTCACAGTTT
CGAAGTAGGGATTCACAGTTTCGAAGTTTCATCAGAACAAAACACTGAAA
CGTGGCGATACGCAGGGATTCACAGTTTCGAAGTTTCATCAGAACCAAAT
ACTGAAACGTAGCGATACGCAGGGATTCGCAGCCTGTGTCATGTGTACGT
TGTCATCGGCGTGTACACGAAGCGGCCGCTCTTTCGAGTCCAAACCTGGA
CTTCGGGG back to topCoding sequence (CDS) from alignment at Scaffold_548:94653..98560- >EsuBft986_7a-0001 ID=EsuBft986_7a-0001|Name=EsuBft986_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1494bp|location=Sequence derived from alignment at Scaffold_548:94653..98560- (Ectocarpus subulatus male Bft15b)
ATGCGTGTCGCAGTGCCGGCGCTCTTAGGGCTGCTGGGCGTCGCCCGCCT
CGGCTGTGCACTTGTATTGCCCGCGGGACGTGTGGTTCACCGCCAAATGG
CCGAGACAGCAACCGAAAGTGGTGGTATCGATGTGCCGGCTGCCTTCGCC
ACCACGGCGGTAGCTACTGCCTCCCTGCAGCAGCTGCAACGTAGCGTCGC
CGTCTGGGACGTTATCATGGAAGACTTCGAAGACGATCTAGAGCTGGATA
CAGAGGACGATGAAGCGTCGAGGGAGGTGAAGAGGCGGCGTGTGTACGTT
CGTAAAGACTACACGAAGTCGGGATGGTGGCAGGAGCTCATGGAGCTGCG
AGAGACAGGCGAGACAGATCACACGACCCGGGAAGCGCGGCGTTTTCGCA
ACAACTTCCGCGTCCCCTACCCGTTTTTCGTGCACTTGGTGGAGCTGGTG
AGGGACAGAGACTGGTTCCCAACCGGGGAGTCGGATGTCACGGGTCGCCA
AGCCGTCCCTGTTGAGTTGAAGGTGCTGGCCTGTCTGCAGATACTCAGCA
GAGGAAATGTGTTCGCAGATATCTACCACATGTCCTTCATCAGCTTTCAG
ACGGTGGCGTCCACCTTCCACCGCTTCTGCAAGTACTTCGCGGCGGAGCT
GTACGACGAATATGTCTACCTGCCGACTGGGGAGGACCTGAGGAAAGTCA
TGGAGCAGTACGATCGCATAGGTTTCCCCGGAGCCGTCGGGTCCACGGAC
GTCACCCACATCTACTGGGGCATGTGCCCCTACAACCAAGCCCGCATTTA
TACGGGCAAAGAGGGGAAGCCTACCGTCGCTTTTCAAGTTACGGTGGACC
ATAGCGGGCGCGTTCTGGCGGTGACCCGAGGGTTTACGGGGGCGACGAAC
GACAAGACCATCATCCGCTACGACAAGGCGGTGACGCGCATCCGGACGGA
TCCTGTGTATACGGAGCAGAAGTACAAGCTGTACGCGCAGGATGGACAGC
AGTTCGAGGAAAAGGGGTGCTATCTGCTGGTGGACAATGGGTACCACAAG
TGGAGGACTCTCATTCCCCCTTCCAAGTGCCCGATCGACCGTGGCGACCT
CATCTTCTCGAAGAGGCTCGAGAGCGCTCGCAAGGACGTCGAATGCTACT
TCGGGATCCTCAAAGGGCGCTTTCGAATCAACAAGCTGGCCATCGGCTTT
CACAAGCAGGAATACATCGACAACGTGTTCTTCACCTGCTGCATCCTCCA
CAACATGCTGCACAGCTTCGACAACCGGGGGGACATGAGCGAGGAGCCCA
ACTGGGCTGGGAGCGCCGGCCTGCACAACGCCGCGGATCGCGACCCCAAC
ACGGACTACAGCTCGGTCGGGTCAATGGACGGTCAGCATGAGGCGGTCGA
GGTGGAGACGGGCTTCGGGGCGCTGCGGTCTAAGTTGGTTACGAACTTCG
TGTACCGCAGGGAAAAGAAGAGGGACATTGTGTGGCTGTCGTAG back to top
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