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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LDH4 |
| ProteomeId | EsuBft1015_2 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | PTHR12297 |
| Protein domains | TMhelix |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | IPR007667 |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | hig1 domain family member mitochondrial os:homo sapiens gn:higd2a pe:1 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1231 |
| Hectar predicted targeting category | other localisation |
| Evalue | 5.19e-78 |
| EggNOG OGs | KOG4431@1|root,KOG4431@2759|Eukaryota |
| Ec32 ortholog description | Hypoxia induced protein, domain |
| Ec32 ortholog | Ec-15_000600.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | HIGD1B |
| GOs | GO:0001666,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005886,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006996,GO:0007005,GO:0007154,GO:0007610,GO:0008150,GO:0008152,GO:0008535,GO:0009056,GO:0009057,GO:0009267,GO:0009605,GO:0009628,GO:0009636,GO:0009889,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010562,GO:0010604,GO:0010639,GO:0010646,GO:0010648,GO:0010821,GO:0010823,GO:0010941,GO:0016020,GO:0016021,GO:0016043,GO:0016567,GO:0016740,GO:0017004,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019866,GO:0019941,GO:0022607,GO:0023051,GO:0023057,GO:0030163,GO:0030534,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0031667,GO:0031668,GO:0031669,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032592,GO:0032991,GO:0033043,GO:0033108,GO:0033554,GO:0033617,GO:0033674,GO:0034622,GO:0036211,GO:0036293,GO:0036294,GO:0042149,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042592,GO:0042594,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043549,GO:0043618,GO:0043620,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045471,GO:0045859,GO:0045860,GO:0045937,GO:0046677,GO:0048149,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051338,GO:0051347,GO:0051603,GO:0051716,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0060255,GO:0060548,GO:0061418,GO:0061630,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070482,GO:0070647,GO:0070887,GO:0071453,GO:0071456,GO:0071496,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0071944,GO:0080090,GO:0090199,GO:0090201,GO:0097249,GO:0097250,GO:0097305,GO:0098573,GO:0098771,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1903506,GO:2000112,GO:2001141,GO:2001233,GO:2001234 |
| Description | mitochondrial respiratory chain supercomplex assembly |
| COG category | O |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0005739 |
| GO | 0043066 |
| GO | 0097250 |
| GO | 0003333 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1015_2a-0001 ID=EsuBft1015_2a-0001|Name=EsuBft1015_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1231bp|location=Sequence derived from alignment at Scaffold_544:344570..348127- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCTGTTTGTTTGAAACCGGAGTTGTGCGCTCGCTGTGGTACAAACTATTC
TATCATGGTGACAATGGACGAGCGAGCACCCTCTTTCTTTGAGAAGTTGG
CGGTGAAGGGGAAAAAGGAGCCTCTGGTGCCGATCGGGGCCTTAGCGACA
GTGGGATTCTTGGTGTCAGGAATCTACTCTTTCAAGCAGGGCAACAAGCA
GCTTTCGCAGAAGCTTATGAGGGGCCGGGTGGTCGCACAGGGATTTACGA
TTCTGGTAATGACGGCGGGGTTCTTCATGGCGGGGCCACCGGAGATGACC
AGGCAGACGGTGGAGGGAAAAATGGACGCTATAAGCAAGCAGACCAACCG
GTGGTCTGGGGTACCGCCCCCAACCGCCCAGGCCAAAGCGGTAGCAATAG
AGGACGGCCGACAGTGAATCTGTTCGTAGCGCGTTTTGACCGTAGTCCCG
GTACCGGCAGATATTGTTCATGTGGTAGGATAAGGGCGGGGACGTGGCTC
AGGATGCCTTTGTACCTCAGACATGATGAACGTTGGCTTTTTTTTTGTGA
CTGCACACCGGGGCATTGTTTCTTCTTTTCCCTGGCGTCGTTTGTTTTTG
ACAACGGACGCGCGTTTAGGCGGCGCTGTGACTGAGGAAACCCCGTACTA
CCGGTGCAGGCGAATCTTGTTCAACGGTAGGTTTTAGATAGCGGCGGCGA
CATTGCTCAGGATGTCCTTTTACCTCAGGCATGGTGGACATTGAGTACTA
TTTTTCTTGTGGCACACCGGGCTATTGCTTCTTCCTTCACGCGACTTGTT
TTGGACAACGGATGGACGTTTTGGTGGCATCTCGTCTCGTTGTAACCGCG
CAGCGGCACCTGTGTGTGTTTGTGTGCATTTTTTTTTGCTTCGCTGGCGA
GTGGACCCTCACATCCTTCATGCATGCAGGTGCCAAAGCTGTGCGATGTT
GAATAGTTTTTCTAATATAATGGGGGCACGTGGTGCGTCATGTATATTTT
TGAGGCTTTCGAATCATGGTCTGTGAGGCCAGATCGGTAGATTATTTTTT
TCTTCCGAAGATACATGTCGGGTTCCGATTTTCAACAACACGAAATAGCA
GTTGAAAGAAAACGTTTAGTCTAATTCTCAAGTAACTTTATTGGTAAAAA
ATACCCCAGTTTCGTGTAACCTTCCTCCCGATGATTTGTGCTGGGTAAGT
GACACAACAGGGTAGTATACCATACATACCT back to topprotein sequence of EsuBft1015_2a-0001 >EsuBft1015_2 ID=EsuBft1015_2|Name=EsuBft1015_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=120bp
MVTMDERAPSFFEKLAVKGKKEPLVPIGALATVGFLVSGIYSFKQGNKQL
SQKLMRGRVVAQGFTILVMTAGFFMAGPPEMTRQTVEGKMDAISKQTNRW
SGVPPPTAQAKAVAIEDGRQ back to topmRNA from alignment at Scaffold_544:344570..348127- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1015_2a-0001 ID=EsuBft1015_2a-0001|Name=EsuBft1015_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3558bp|location=Sequence derived from alignment at Scaffold_544:344570..348127- (Ectocarpus subulatus male Bft15b)
GCTGTTTGTTTGAAACCGGAGTTGTGCGCTCGCTGTGGTACAAACTATTC
TATCATGGTGACAATGGACGAGCGAGCACCCTCTTTCTTTGAGAAGTTGG
CGGTGAAGGGGAAAAAGGAGCCTCTGGTGCCGATCGGGGCCTTAGCGACA
GTGGGATTCTTGGTGTCAGGTATGGCAATCAGTGTTTTCCAAAAGCAGCA
TGCTTCGCCCCCAACACAGCAAAGCGTCAGCAGAGATGTAGCACACGTCG
AGACACATTTGTCAGTTACCTTCAATAGTGAAGGCACGGGGAAGGAGAGG
TTGTAAGTTCCCTGTATTCCTAGCATTAAGGTATCTACACACGGCTGGTA
CACTCCGCTGCCCGGCGTTCCAACCGGCCCCTTGACTCGTACCTTACCAG
CGGAAGAGGAGGTTCTGTTGCTATATTGCTAATACTCTGGCTGTCGAACT
CTCGTTGAAGGCGGACTCTGGCCTGAGGTTGCCGCCCGTTCTTGTTTTTT
TCTAATCGCCAACATATCGGAGTTCGACGAGGCACCCGTTTTTGGTCTCT
GCGCTGCCAGCAGCCGGTCAAACAGAACACGAGCAGCCGCCAGCAGCAGC
AGCCAGCACAACCCTTGAGGGCTCAGTAGCACACGCTTTGCGAACTACCG
CCCGTCGTGCAAACCATAACTATCGCGTAAAAAGTGAACCTTAGCAGGAT
GGGCCTGTGTTCTGGTAGAGCACAGCCGTATTCGTGAAACAGCGAAATGA
TGCTGCGGTGGTAGACTACAGAAGTACGATAGTTGATACTGCGATGTCCC
CTGCCTGAATATTACAAAAGAAGTAGAACTACAAACATGCAACGTCACCG
TCAGGTCCCCATAGCTGACGCGCTTCTCCCCTTAGCATGGCCAAATCATT
CGTTTTTTCTGGAAGTCTAGGCTTTTCTGAGTTAAGGCGAAAGAACAGAT
GCTCGCGGAGGGACTTCGATCGTATCTACGCTGTAGTCTGCGCAGGTTTA
GCTGAGTAATACAGAATCGGAAAAGTTGGGGTTAGGGCTATAGGTAAAGG
GTGCATACGATTTCATTACTTCCCCAAGGGGCAATCGCTCCTCGTGCGAT
TGTGGATACCCTGTGGATCGCATTGTTCGTGGTTTGGTGCAGCATTTAGA
TACATCTTGACGTTAGGAGTAAAGCTTCTGACCACCTCGCCGCATGGGAT
TGTGGTTCCCTGCCACTCCCCATTTGACCTTGGTTGTGTGTGTTTTGTGG
TCATCTTGTGCCTTGATGCTTGCCTTGTTTTCTTGTAGGGGTACAGTCAT
CTCTCGGTTAAGGGCACCATTTTTAAGGACACTCCCCTGTCAAGGACAAC
CTTTTTTTCACAGGCATGGTGGCCCGCAGAATGTAGATAGAACATAAGGA
GGGATATCAACCTGGAGGACACTTTCCCCGGCTTTAGAACAGATTTACCT
GTTTCAACGAAGAACCATGTATGTCCTTAACGGAGAGGGTTGTTAGCTAC
GACATATGCATATAGCTGGCCAATGAGAATCGTCAGTTCTAGAGTAAGTA
GCACACAGCGTCCGTGGCAGAGGGGGCCCAGTGTAGCGCAAAGGAAAGCA
TCGCCACGCCGGTTGTGCCTCCTGTTTCTGGCGAGGCGATGGTCGAATAT
CCCTGCAATTGGTGGCTCGTGTGGTCACTTTCTCTCGTGCCCATCCATTG
CGTACTCCGTATATCTCCGTCACCTTTGTCTCCCGTGATATGTGTGGCAT
GCGTCTCCCCTCCTGTTTTTCCAACGATATTTTTCTGTTCCGGTTGTGGC
CGTCGTTGAACTCGGTTCATCAGATAAAAAGGCTGAGTAATTTGTCTCTT
CTTTTTTTTGCCTGCTACATTGAACCGACGCAAGCATCCCGCGTGTGTAC
TGCTCCATGCTGTCGGGTCGCAGGAATCTACTCTTTCAAGCAGGGCAACA
AGCAGCTTTCGCAGAAGCTTATGAGGGGCCGGGTGGTCGCACAGGGATTT
ACGATTCTGGTAATGACGGCGGGGTTCTTCATGGCGGGGCCACCGGAGGT
ACGCAACAGGAATCGACTTTTTCTGTCACTCTTGTGGGTACCTCTTGGCT
GTCTCTCTCTGGGTTTTATGAAATTCTTCATGGCCGGGCGCCCACGCGCG
TGATGCGAGGGCAAGTCGACTTGACTGCCAAGTTAAGCAGGGTTTGCCAA
CACAGGCGTTGGCTGTCGTGTTCCCATGTGTACAAGTCGTGCGACCCGAA
ACAGGTAGCAGCCACGCACTCCATGCTACCGATAAATTGGATGTCGGGAG
TCACCTATCAGGTTTTTGTTTTGTGTTGTTTGGTGATCCTGTGTGCCAAT
TTGTTGACCATGTTGCCATCCGAACGGCTTCCCTCCTCCTTCCACCTTGG
TGTGCGTGTTGCGCTGTCCCTTCACCCAAAACATGATGTGGAGATACACC
ATGTCTCGGATGTTGTCCGTCAGAGTACCCCAGCAATCCTGGTGAGGGTA
GGTGTTCTCCTTCTCGACTGCGATGCATTGAAGTGACAAGGTGGCGTCAA
GCACCACGCAAGTAACCCCCTCCCCCCCTCCCCTCCCGCTTCGCTGACCG
GACGGTTTGTTGACTCGAAAGATGACCAGGCAGACGGTGGAGGGAAAAAT
GGACGCTATAAGCAAGCAGACCAACCGGTGGTCTGGGGTACCGCCCCCAA
CCGCCCAGGCCAAAGCGGTAGCAATAGAGGACGGCCGACAGTGAATCTGT
TCGTAGCGCGTTTTGACCGTAGTCCCGGTACCGGCAGATATTGTTCATGT
GGTAGGATAAGGGCGGGGACGTGGCTCAGGATGCCTTTGTACCTCAGACA
TGATGAACGTTGGCTTTTTTTTTGTGACTGCACACCGGGGCATTGTTTCT
TCTTTTCCCTGGCGTCGTTTGTTTTTGACAACGGACGCGCGTTTAGGCGG
CGCTGTGACTGAGGAAACCCCGTACTACCGGTGCAGGCGAATCTTGTTCA
ACGGTAGGTTTTAGATAGCGGCGGCGACATTGCTCAGGATGTCCTTTTAC
CTCAGGCATGGTGGACATTGAGTACTATTTTTCTTGTGGCACACCGGGCT
ATTGCTTCTTCCTTCACGCGACTTGTTTTGGACAACGGATGGACGTTTTG
GTGGCATCTCGTCTCGTTGTAACCGCGCAGCGGCACCTGTGTGTGTTTGT
GTGCATTTTTTTTTGCTTCGCTGGCGAGTGGACCCTCACATCCTTCATGC
ATGCAGGTGCCAAAGCTGTGCGATGTTGAATAGTTTTTCTAATATAATGG
GGGCACGTGGTGCGTCATGTATATTTTTGAGGCTTTCGAATCATGGTCTG
TGAGGCCAGATCGGTAGATTATTTTTTTCTTCCGAAGATACATGTCGGGT
TCCGATTTTCAACAACACGAAATAGCAGTTGAAAGAAAACGTTTAGTCTA
ATTCTCAAGTAACTTTATTGGTAAAAAATACCCCAGTTTCGTGTAACCTT
CCTCCCGATGATTTGTGCTGGGTAAGTGACACAACAGGGTAGTATACCAT
ACATACCT back to topCoding sequence (CDS) from alignment at Scaffold_544:344570..348127- >EsuBft1015_2a-0001 ID=EsuBft1015_2a-0001|Name=EsuBft1015_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=363bp|location=Sequence derived from alignment at Scaffold_544:344570..348127- (Ectocarpus subulatus male Bft15b)
ATGGTGACAATGGACGAGCGAGCACCCTCTTTCTTTGAGAAGTTGGCGGT
GAAGGGGAAAAAGGAGCCTCTGGTGCCGATCGGGGCCTTAGCGACAGTGG
GATTCTTGGTGTCAGGAATCTACTCTTTCAAGCAGGGCAACAAGCAGCTT
TCGCAGAAGCTTATGAGGGGCCGGGTGGTCGCACAGGGATTTACGATTCT
GGTAATGACGGCGGGGTTCTTCATGGCGGGGCCACCGGAGATGACCAGGC
AGACGGTGGAGGGAAAAATGGACGCTATAAGCAAGCAGACCAACCGGTGG
TCTGGGGTACCGCCCCCAACCGCCCAGGCCAAAGCGGTAGCAATAGAGGA
CGGCCGACAGTGA back to top
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