EsuBft1015_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1015_2a-0001
Unique NameEsuBft1015_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_544contigScaffold_544:344570..348127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LDH4
ProteomeIdEsuBft1015_2
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsPTHR12297
Protein domainsTMhelix
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR007667
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Notehig1 domain family member mitochondrial os:homo sapiens gn:higd2a pe:1 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length1231
Hectar predicted targeting categoryother localisation
Evalue5.19e-78
EggNOG OGsKOG4431@1|root,KOG4431@2759|Eukaryota
Ec32 ortholog descriptionHypoxia induced protein, domain
Ec32 orthologEc-15_000600.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameHIGD1B
GOsGO:0001666,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005886,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006996,GO:0007005,GO:0007154,GO:0007610,GO:0008150,GO:0008152,GO:0008535,GO:0009056,GO:0009057,GO:0009267,GO:0009605,GO:0009628,GO:0009636,GO:0009889,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010562,GO:0010604,GO:0010639,GO:0010646,GO:0010648,GO:0010821,GO:0010823,GO:0010941,GO:0016020,GO:0016021,GO:0016043,GO:0016567,GO:0016740,GO:0017004,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019866,GO:0019941,GO:0022607,GO:0023051,GO:0023057,GO:0030163,GO:0030534,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0031667,GO:0031668,GO:0031669,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032592,GO:0032991,GO:0033043,GO:0033108,GO:0033554,GO:0033617,GO:0033674,GO:0034622,GO:0036211,GO:0036293,GO:0036294,GO:0042149,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042592,GO:0042594,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043549,GO:0043618,GO:0043620,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045471,GO:0045859,GO:0045860,GO:0045937,GO:0046677,GO:0048149,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051338,GO:0051347,GO:0051603,GO:0051716,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0060255,GO:0060548,GO:0061418,GO:0061630,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070482,GO:0070647,GO:0070887,GO:0071453,GO:0071456,GO:0071496,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0071944,GO:0080090,GO:0090199,GO:0090201,GO:0097249,GO:0097250,GO:0097305,GO:0098573,GO:0098771,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1903506,GO:2000112,GO:2001141,GO:2001233,GO:2001234
Descriptionmitochondrial respiratory chain supercomplex assembly
COG categoryO
Cross References
External references for this mRNA
DatabaseAccession
GO0005739
GO0043066
GO0097250
GO0003333
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_2aEsuBft1015_2aEctocarpus subulatus male Bft15bgeneScaffold_544 344570..348127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_2a-0001EsuBft1015_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_544 345384..348073 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_2a-0001-exonagat-exon-13088Ectocarpus subulatus male Bft15bexonScaffold_544 344570..345506 -
EsuBft1015_2a-0001-exonEsuBft1015_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_544 346080..346204 -
EsuBft1015_2a-0001-exonagat-exon-13089Ectocarpus subulatus male Bft15bexonScaffold_544 347959..348127 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_2a-0001-exonagat-three_prime_utr-158Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_544 344570..345383 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_2a-0001-cdsEsuBft1015_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_544 345384..345506 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_2a-0001-exonagat-five_prime_utr-95Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_544 348074..348127 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1015_2a-0001 ID=EsuBft1015_2a-0001|Name=EsuBft1015_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1231bp|location=Sequence derived from alignment at Scaffold_544:344570..348127- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTGTTTGTTTGAAACCGGAGTTGTGCGCTCGCTGTGGTACAAACTATTC
TATCATGGTGACAATGGACGAGCGAGCACCCTCTTTCTTTGAGAAGTTGG
CGGTGAAGGGGAAAAAGGAGCCTCTGGTGCCGATCGGGGCCTTAGCGACA
GTGGGATTCTTGGTGTCAGGAATCTACTCTTTCAAGCAGGGCAACAAGCA
GCTTTCGCAGAAGCTTATGAGGGGCCGGGTGGTCGCACAGGGATTTACGA
TTCTGGTAATGACGGCGGGGTTCTTCATGGCGGGGCCACCGGAGATGACC
AGGCAGACGGTGGAGGGAAAAATGGACGCTATAAGCAAGCAGACCAACCG
GTGGTCTGGGGTACCGCCCCCAACCGCCCAGGCCAAAGCGGTAGCAATAG
AGGACGGCCGACAGTGAATCTGTTCGTAGCGCGTTTTGACCGTAGTCCCG
GTACCGGCAGATATTGTTCATGTGGTAGGATAAGGGCGGGGACGTGGCTC
AGGATGCCTTTGTACCTCAGACATGATGAACGTTGGCTTTTTTTTTGTGA
CTGCACACCGGGGCATTGTTTCTTCTTTTCCCTGGCGTCGTTTGTTTTTG
ACAACGGACGCGCGTTTAGGCGGCGCTGTGACTGAGGAAACCCCGTACTA
CCGGTGCAGGCGAATCTTGTTCAACGGTAGGTTTTAGATAGCGGCGGCGA
CATTGCTCAGGATGTCCTTTTACCTCAGGCATGGTGGACATTGAGTACTA
TTTTTCTTGTGGCACACCGGGCTATTGCTTCTTCCTTCACGCGACTTGTT
TTGGACAACGGATGGACGTTTTGGTGGCATCTCGTCTCGTTGTAACCGCG
CAGCGGCACCTGTGTGTGTTTGTGTGCATTTTTTTTTGCTTCGCTGGCGA
GTGGACCCTCACATCCTTCATGCATGCAGGTGCCAAAGCTGTGCGATGTT
GAATAGTTTTTCTAATATAATGGGGGCACGTGGTGCGTCATGTATATTTT
TGAGGCTTTCGAATCATGGTCTGTGAGGCCAGATCGGTAGATTATTTTTT
TCTTCCGAAGATACATGTCGGGTTCCGATTTTCAACAACACGAAATAGCA
GTTGAAAGAAAACGTTTAGTCTAATTCTCAAGTAACTTTATTGGTAAAAA
ATACCCCAGTTTCGTGTAACCTTCCTCCCGATGATTTGTGCTGGGTAAGT
GACACAACAGGGTAGTATACCATACATACCT
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protein sequence of EsuBft1015_2a-0001

>EsuBft1015_2 ID=EsuBft1015_2|Name=EsuBft1015_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=120bp
MVTMDERAPSFFEKLAVKGKKEPLVPIGALATVGFLVSGIYSFKQGNKQL
SQKLMRGRVVAQGFTILVMTAGFFMAGPPEMTRQTVEGKMDAISKQTNRW
SGVPPPTAQAKAVAIEDGRQ
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mRNA from alignment at Scaffold_544:344570..348127-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1015_2a-0001 ID=EsuBft1015_2a-0001|Name=EsuBft1015_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3558bp|location=Sequence derived from alignment at Scaffold_544:344570..348127- (Ectocarpus subulatus male Bft15b)
GCTGTTTGTTTGAAACCGGAGTTGTGCGCTCGCTGTGGTACAAACTATTC
TATCATGGTGACAATGGACGAGCGAGCACCCTCTTTCTTTGAGAAGTTGG
CGGTGAAGGGGAAAAAGGAGCCTCTGGTGCCGATCGGGGCCTTAGCGACA
GTGGGATTCTTGGTGTCAGGTATGGCAATCAGTGTTTTCCAAAAGCAGCA
TGCTTCGCCCCCAACACAGCAAAGCGTCAGCAGAGATGTAGCACACGTCG
AGACACATTTGTCAGTTACCTTCAATAGTGAAGGCACGGGGAAGGAGAGG
TTGTAAGTTCCCTGTATTCCTAGCATTAAGGTATCTACACACGGCTGGTA
CACTCCGCTGCCCGGCGTTCCAACCGGCCCCTTGACTCGTACCTTACCAG
CGGAAGAGGAGGTTCTGTTGCTATATTGCTAATACTCTGGCTGTCGAACT
CTCGTTGAAGGCGGACTCTGGCCTGAGGTTGCCGCCCGTTCTTGTTTTTT
TCTAATCGCCAACATATCGGAGTTCGACGAGGCACCCGTTTTTGGTCTCT
GCGCTGCCAGCAGCCGGTCAAACAGAACACGAGCAGCCGCCAGCAGCAGC
AGCCAGCACAACCCTTGAGGGCTCAGTAGCACACGCTTTGCGAACTACCG
CCCGTCGTGCAAACCATAACTATCGCGTAAAAAGTGAACCTTAGCAGGAT
GGGCCTGTGTTCTGGTAGAGCACAGCCGTATTCGTGAAACAGCGAAATGA
TGCTGCGGTGGTAGACTACAGAAGTACGATAGTTGATACTGCGATGTCCC
CTGCCTGAATATTACAAAAGAAGTAGAACTACAAACATGCAACGTCACCG
TCAGGTCCCCATAGCTGACGCGCTTCTCCCCTTAGCATGGCCAAATCATT
CGTTTTTTCTGGAAGTCTAGGCTTTTCTGAGTTAAGGCGAAAGAACAGAT
GCTCGCGGAGGGACTTCGATCGTATCTACGCTGTAGTCTGCGCAGGTTTA
GCTGAGTAATACAGAATCGGAAAAGTTGGGGTTAGGGCTATAGGTAAAGG
GTGCATACGATTTCATTACTTCCCCAAGGGGCAATCGCTCCTCGTGCGAT
TGTGGATACCCTGTGGATCGCATTGTTCGTGGTTTGGTGCAGCATTTAGA
TACATCTTGACGTTAGGAGTAAAGCTTCTGACCACCTCGCCGCATGGGAT
TGTGGTTCCCTGCCACTCCCCATTTGACCTTGGTTGTGTGTGTTTTGTGG
TCATCTTGTGCCTTGATGCTTGCCTTGTTTTCTTGTAGGGGTACAGTCAT
CTCTCGGTTAAGGGCACCATTTTTAAGGACACTCCCCTGTCAAGGACAAC
CTTTTTTTCACAGGCATGGTGGCCCGCAGAATGTAGATAGAACATAAGGA
GGGATATCAACCTGGAGGACACTTTCCCCGGCTTTAGAACAGATTTACCT
GTTTCAACGAAGAACCATGTATGTCCTTAACGGAGAGGGTTGTTAGCTAC
GACATATGCATATAGCTGGCCAATGAGAATCGTCAGTTCTAGAGTAAGTA
GCACACAGCGTCCGTGGCAGAGGGGGCCCAGTGTAGCGCAAAGGAAAGCA
TCGCCACGCCGGTTGTGCCTCCTGTTTCTGGCGAGGCGATGGTCGAATAT
CCCTGCAATTGGTGGCTCGTGTGGTCACTTTCTCTCGTGCCCATCCATTG
CGTACTCCGTATATCTCCGTCACCTTTGTCTCCCGTGATATGTGTGGCAT
GCGTCTCCCCTCCTGTTTTTCCAACGATATTTTTCTGTTCCGGTTGTGGC
CGTCGTTGAACTCGGTTCATCAGATAAAAAGGCTGAGTAATTTGTCTCTT
CTTTTTTTTGCCTGCTACATTGAACCGACGCAAGCATCCCGCGTGTGTAC
TGCTCCATGCTGTCGGGTCGCAGGAATCTACTCTTTCAAGCAGGGCAACA
AGCAGCTTTCGCAGAAGCTTATGAGGGGCCGGGTGGTCGCACAGGGATTT
ACGATTCTGGTAATGACGGCGGGGTTCTTCATGGCGGGGCCACCGGAGGT
ACGCAACAGGAATCGACTTTTTCTGTCACTCTTGTGGGTACCTCTTGGCT
GTCTCTCTCTGGGTTTTATGAAATTCTTCATGGCCGGGCGCCCACGCGCG
TGATGCGAGGGCAAGTCGACTTGACTGCCAAGTTAAGCAGGGTTTGCCAA
CACAGGCGTTGGCTGTCGTGTTCCCATGTGTACAAGTCGTGCGACCCGAA
ACAGGTAGCAGCCACGCACTCCATGCTACCGATAAATTGGATGTCGGGAG
TCACCTATCAGGTTTTTGTTTTGTGTTGTTTGGTGATCCTGTGTGCCAAT
TTGTTGACCATGTTGCCATCCGAACGGCTTCCCTCCTCCTTCCACCTTGG
TGTGCGTGTTGCGCTGTCCCTTCACCCAAAACATGATGTGGAGATACACC
ATGTCTCGGATGTTGTCCGTCAGAGTACCCCAGCAATCCTGGTGAGGGTA
GGTGTTCTCCTTCTCGACTGCGATGCATTGAAGTGACAAGGTGGCGTCAA
GCACCACGCAAGTAACCCCCTCCCCCCCTCCCCTCCCGCTTCGCTGACCG
GACGGTTTGTTGACTCGAAAGATGACCAGGCAGACGGTGGAGGGAAAAAT
GGACGCTATAAGCAAGCAGACCAACCGGTGGTCTGGGGTACCGCCCCCAA
CCGCCCAGGCCAAAGCGGTAGCAATAGAGGACGGCCGACAGTGAATCTGT
TCGTAGCGCGTTTTGACCGTAGTCCCGGTACCGGCAGATATTGTTCATGT
GGTAGGATAAGGGCGGGGACGTGGCTCAGGATGCCTTTGTACCTCAGACA
TGATGAACGTTGGCTTTTTTTTTGTGACTGCACACCGGGGCATTGTTTCT
TCTTTTCCCTGGCGTCGTTTGTTTTTGACAACGGACGCGCGTTTAGGCGG
CGCTGTGACTGAGGAAACCCCGTACTACCGGTGCAGGCGAATCTTGTTCA
ACGGTAGGTTTTAGATAGCGGCGGCGACATTGCTCAGGATGTCCTTTTAC
CTCAGGCATGGTGGACATTGAGTACTATTTTTCTTGTGGCACACCGGGCT
ATTGCTTCTTCCTTCACGCGACTTGTTTTGGACAACGGATGGACGTTTTG
GTGGCATCTCGTCTCGTTGTAACCGCGCAGCGGCACCTGTGTGTGTTTGT
GTGCATTTTTTTTTGCTTCGCTGGCGAGTGGACCCTCACATCCTTCATGC
ATGCAGGTGCCAAAGCTGTGCGATGTTGAATAGTTTTTCTAATATAATGG
GGGCACGTGGTGCGTCATGTATATTTTTGAGGCTTTCGAATCATGGTCTG
TGAGGCCAGATCGGTAGATTATTTTTTTCTTCCGAAGATACATGTCGGGT
TCCGATTTTCAACAACACGAAATAGCAGTTGAAAGAAAACGTTTAGTCTA
ATTCTCAAGTAACTTTATTGGTAAAAAATACCCCAGTTTCGTGTAACCTT
CCTCCCGATGATTTGTGCTGGGTAAGTGACACAACAGGGTAGTATACCAT
ACATACCT
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Coding sequence (CDS) from alignment at Scaffold_544:344570..348127-

>EsuBft1015_2a-0001 ID=EsuBft1015_2a-0001|Name=EsuBft1015_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=363bp|location=Sequence derived from alignment at Scaffold_544:344570..348127- (Ectocarpus subulatus male Bft15b)
ATGGTGACAATGGACGAGCGAGCACCCTCTTTCTTTGAGAAGTTGGCGGT
GAAGGGGAAAAAGGAGCCTCTGGTGCCGATCGGGGCCTTAGCGACAGTGG
GATTCTTGGTGTCAGGAATCTACTCTTTCAAGCAGGGCAACAAGCAGCTT
TCGCAGAAGCTTATGAGGGGCCGGGTGGTCGCACAGGGATTTACGATTCT
GGTAATGACGGCGGGGTTCTTCATGGCGGGGCCACCGGAGATGACCAGGC
AGACGGTGGAGGGAAAAATGGACGCTATAAGCAAGCAGACCAACCGGTGG
TCTGGGGTACCGCCCCCAACCGCCCAGGCCAAAGCGGTAGCAATAGAGGA
CGGCCGACAGTGA
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