EsuBft5543_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft5543_2a-0001
Unique NameEsuBft5543_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_544contigScaffold_544:189723..191499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7668.SPU_010878-tr
ProteomeIdEsuBft5543_2
Protein domainsIPR027124
Protein domainsPTHR23227
Protein domainsIPR005135
Ownerapollo_admin@sb-roscoff.fr
Notecraniofacial development protein 2 os:bos taurus gn:cfdp2 pe:1 sv:2 [Automatic annotation]
Nb exon3
Max annot lvl33208|Metazoa
Length1143
Hectar predicted targeting categoryother localisation
Evalue8.44e-18
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39VM0@33154|Opisthokonta,3BKMM@33208|Metazoa,3D1CS@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionEndonuclease/Exonuclease/phosphatase family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft5543_2aEsuBft5543_2aEctocarpus subulatus male Bft15bgeneScaffold_544 189723..191499 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5543_2a-0001-exonagat-exon-71473Ectocarpus subulatus male Bft15bexonScaffold_544 189723..190528 -
EsuBft5543_2a-0001-exonEsuBft5543_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_544 190727..190817 -
EsuBft5543_2a-0001-exonagat-exon-71474Ectocarpus subulatus male Bft15bexonScaffold_544 191254..191499 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5543_2a-0001-cdsEsuBft5543_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_544 189723..190528 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5543_2a-0001-exonagat-five_prime_utr-11606Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_544 191446..191499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5543_2a-0001EsuBft5543_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_544 189723..191445 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft5543_2a-0001 ID=EsuBft5543_2a-0001|Name=EsuBft5543_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1143bp|location=Sequence derived from alignment at Scaffold_544:189723..191499- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGTGTCAGTTGCTAATCCCAAAATCTAGCAAAGACTCGGTCCGTGGTCAC
AAAAATGCTAGAGCCATCAGATGATCTAAAGAACACACACACTATTAGCA
ATAAATGGGTACGCAAGCCCGAGGAGGTACACCTGCAGTCCCTGCAGCAC
GTTTGCATGCTCACAACTGAACTACACGCCCACACACTACAAATCGACTA
CAGCAGCAGCATCACCCCCCTTGTCCCGCATTTAACCAAAATGAATATAG
TAGGCGGGTGGTGTCCCAAGGTGCAACTCACCGCCGCGCTGGCTCAGCGT
GGCAGTGAGGAAGCACAGACGGTGGCAGTGGCGAGAGGCAAGAACCGAGC
TCTGCAGAGATGGATTGATGCGAGGAAATTCGCCGCTCGGAAAATACGGA
AGAAAGCACACCCGCAACGCGAGGTGGACCGAGAGAGACACGAGACCGCA
GCGGCCGTCAAGGCGGCTGCGAAGAAGAAGGCACGAGAGGGCGACCTATC
GTTCGGCACGTTCAACGTACGCACGCTCGCCTACAGCGGTAGGAACCCCA
TCGGTCACAACGTGATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGT
GATGTGATAGGACTTCAGGAGACCCGACGAGAGGGGCAAGGTTCAATTGC
ACACGACGGGTACGTGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGG
ACAAGAGGGGCGTACACGGTGTGGGCATAGCGATCAAGGAGACCATGTGG
GAGAGTGTGGGCGAGGAAGGTAGGAAGGTGGAGTGCATTGGTCCGAGGCT
GATGAAGGTGCGTTTACGAATTGGCCGCACCTGCGGAATAACTTTCGTGG
TGAGGTACGCCCCCACGGAAACTGTCCGCACCACCGCGGGCGGTGATATT
AACGCCAAGGACTCCTTCTGGACTGCTCTCGACGCAGTGATCCGGGAGGT
TCACAGCCATGACCATCTCGTGGTGCTAATGGACGCCAACGCACGCACTG
GTAGGAGGCGAGACGGGTGCTGCGATGCCAAGATTATGGGCGTGTACGGA
CGCGACATTATGAACAACAACGGGGAACGACTCCTTGGACTGGCATCAAA
CAATCAACTCTCCCTGACCAATACCTACTTCCGAACACCGTAA
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protein sequence of EsuBft5543_2a-0001

>EsuBft5543_2 ID=EsuBft5543_2|Name=EsuBft5543_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=362bp
MLEPSDDLKNTHTISNKWVRKPEEVHLQSLQHVCMLTTELHAHTLQIDYS
SSITPLVPHLTKMNIVGGWCPKVQLTAALAQRGSEEAQTVAVARGKNRAL
QRWIDARKFAARKIRKKAHPQREVDRERHETAAAVKAAAKKKAREGDLSF
GTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAH
DGYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLM
KVRLRIGRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVH
SHDHLVVLMDANARTGRRRDGCCDAKIMGVYGRDIMNNNGERLLGLASNN
QLSLTNTYFRTP
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mRNA from alignment at Scaffold_544:189723..191499-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft5543_2a-0001 ID=EsuBft5543_2a-0001|Name=EsuBft5543_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1777bp|location=Sequence derived from alignment at Scaffold_544:189723..191499- (Ectocarpus subulatus male Bft15b)
CGTGTCAGTTGCTAATCCCAAAATCTAGCAAAGACTCGGTCCGTGGTCAC
AAAAATGCTAGAGCCATCAGATGATCTAAAGAACACACACACTATTAGCA
ATAAATGGGTACGCAAGCCCGAGGAGGTACACCTGCAGTCCCTGCAGCAC
GTTTGCATGCTCACAACTGAACTACACGCCCACACACTACAAATCGACTA
CAGCAGCAGCATCACCCCCCTTGTCCCGCATTTAACCAAAATGAATGTTT
GTCGACTACAGCGTACTGCTGTCTGAAGTGCTGTCTGTACAATAACAACA
ACACCATGGTGCATGCTACACAAGCTCGGGGCATGCAGCTGCTGCCTGAA
GTGCTGTCAAAATGAGTCCGTAGACATACAATGAAGCAGAACACCCAACC
AAAGCCATCATTGCAATTGAAAATCACCCGAATCTATCCAGATCATCTGT
GTTAGGCACAGCAGTGTAAACATCGACACTGACTAGGAATCGTTCCACAT
TGAAGGGGTCTTCCACGATGCAGGTACACAATTACAAGCACCCGGGATAT
CCGCGCCATCTGCCGCGTCTCTCTACAAAACAACCAGTGACGTCATCACA
CACTTCCCCCCCTCGGCCTGCTCCCCGGCCGGGGCCGAAATCGACTTAGT
GAGTCCCTCGCGGGCGAACCAGGCCACAACAGATAGTAGGCGGGTGGTGT
CCCAAGGTGCAACTCACCGCCGCGCTGGCTCAGCGTGGCAGTGAGGAAGC
ACAGACGGTGGCAGTGGCGAGAGGTGTGTATGGACACTGTTCCCGCGGCA
GTAATGCAAAGCGGCAAACTGCACCTGGCAACCACCGTCGCGGGGCCCAC
GAAGCTGGAGGAGTAGAGAGATTCGTAGACACCACGTCAGTAAGCATCAC
TCGAGGGAGAAGGGAGAACCGCGGGCACCGCGGGTAGGGAGTGCTGCACC
CTCCTCGTCAAAACACCACAGGCAAGAACCGAGCTCTGCAGAGATGGATT
GATGCGAGGAAATTCGCCGCTCGGAAAATACGGAAGAAAGCACACCCGCA
ACGCGAGGTGGACCGAGAGAGACACGAGACCGCAGCGGCCGTCAAGGCGG
CTGCGAAGAAGAAGGCACGAGAGGGCGACCTATCGTTCGGCACGTTCAAC
GTACGCACGCTCGCCTACAGCGGTAGGAACCCCATCGGTCACAACGTGAT
GACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGTGATAGGACTTC
AGGAGACCCGACGAGAGGGGCAAGGTTCAATTGCACACGACGGGTACGTG
ATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGGCGTACA
CGGTGTGGGCATAGCGATCAAGGAGACCATGTGGGAGAGTGTGGGCGAGG
AAGGTAGGAAGGTGGAGTGCATTGGTCCGAGGCTGATGAAGGTGCGTTTA
CGAATTGGCCGCACCTGCGGAATAACTTTCGTGGTGAGGTACGCCCCCAC
GGAAACTGTCCGCACCACCGCGGGCGGTGATATTAACGCCAAGGACTCCT
TCTGGACTGCTCTCGACGCAGTGATCCGGGAGGTTCACAGCCATGACCAT
CTCGTGGTGCTAATGGACGCCAACGCACGCACTGGTAGGAGGCGAGACGG
GTGCTGCGATGCCAAGATTATGGGCGTGTACGGACGCGACATTATGAACA
ACAACGGGGAACGACTCCTTGGACTGGCATCAAACAATCAACTCTCCCTG
ACCAATACCTACTTCCGAACACCGTAA
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Coding sequence (CDS) from alignment at Scaffold_544:189723..191499-

>EsuBft5543_2a-0001 ID=EsuBft5543_2a-0001|Name=EsuBft5543_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1089bp|location=Sequence derived from alignment at Scaffold_544:189723..191499- (Ectocarpus subulatus male Bft15b)
ATGCTAGAGCCATCAGATGATCTAAAGAACACACACACTATTAGCAATAA
ATGGGTACGCAAGCCCGAGGAGGTACACCTGCAGTCCCTGCAGCACGTTT
GCATGCTCACAACTGAACTACACGCCCACACACTACAAATCGACTACAGC
AGCAGCATCACCCCCCTTGTCCCGCATTTAACCAAAATGAATATAGTAGG
CGGGTGGTGTCCCAAGGTGCAACTCACCGCCGCGCTGGCTCAGCGTGGCA
GTGAGGAAGCACAGACGGTGGCAGTGGCGAGAGGCAAGAACCGAGCTCTG
CAGAGATGGATTGATGCGAGGAAATTCGCCGCTCGGAAAATACGGAAGAA
AGCACACCCGCAACGCGAGGTGGACCGAGAGAGACACGAGACCGCAGCGG
CCGTCAAGGCGGCTGCGAAGAAGAAGGCACGAGAGGGCGACCTATCGTTC
GGCACGTTCAACGTACGCACGCTCGCCTACAGCGGTAGGAACCCCATCGG
TCACAACGTGATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATG
TGATAGGACTTCAGGAGACCCGACGAGAGGGGCAAGGTTCAATTGCACAC
GACGGGTACGTGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAA
GAGGGGCGTACACGGTGTGGGCATAGCGATCAAGGAGACCATGTGGGAGA
GTGTGGGCGAGGAAGGTAGGAAGGTGGAGTGCATTGGTCCGAGGCTGATG
AAGGTGCGTTTACGAATTGGCCGCACCTGCGGAATAACTTTCGTGGTGAG
GTACGCCCCCACGGAAACTGTCCGCACCACCGCGGGCGGTGATATTAACG
CCAAGGACTCCTTCTGGACTGCTCTCGACGCAGTGATCCGGGAGGTTCAC
AGCCATGACCATCTCGTGGTGCTAATGGACGCCAACGCACGCACTGGTAG
GAGGCGAGACGGGTGCTGCGATGCCAAGATTATGGGCGTGTACGGACGCG
ACATTATGAACAACAACGGGGAACGACTCCTTGGACTGGCATCAAACAAT
CAACTCTCCCTGACCAATACCTACTTCCGAACACCGTAA
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