Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 588596.U9SZ56 |
| ProteomeId | EsuBft1010_10 |
| Protein domains | IPR004875 |
| Protein domains | PTHR19303 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | pogo transposable element with krab domain os:mus musculus gn:pogk pe:2 sv:2 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 4751|Fungi |
| Length | 1401 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.22e-32 |
| EggNOG OGs | KOG3105@1|root,KOG3105@2759|Eukaryota,38I47@33154|Opisthokonta,3P9QG@4751|Fungi |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | DDE superfamily endonuclease |
| COG category | BD |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1010_10a-0001 ID=EsuBft1010_10a-0001|Name=EsuBft1010_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1401bp|location=Sequence derived from alignment at Scaffold_54:66650..69003+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTTTCCTGGAGAGTCAGAGGAGTGGACAGATGGTTTCGGTGGGCATCT
CGACGGCACGCCGGCCGAGGGCAAGGGCAAGGGCAAGAGGAAAAGAGAGC
CGTTGGAATTGGAGCCACCAAACTTCCCCATTAAGTTTGGTGGTGGCCCG
AAACGCAAGCGGAGGTTCCTTGGGAAGAACCGGGTGTCATTACGGGCGGT
TACCAGGCAAGGCCAGAAACTCCCTTCCGGGTGGCCTGCGATTACCATGA
AAGCCGTCAAGGAATGGAGGGCGCTTCGTCACGGAGGAATCGACGGTGCA
ACGAGCAGTGCGCCTTCGAAGCCACCTCTGTTGTTCAAGGAGGAGCAGAG
CTACAGCATGGATGAAACTGCTGTGTGGATGGAGCCCGCTGGCACGTCGA
CCGTGGCGCACACCGGTCAGAAAGAGGTGGCCATCAAAACCGGTGGAAAG
GAAAAGTTGCGGATCACTGCCGTGCTTGCCGCAAACATGAAGGGCGGCAA
ACTCCCGCCGCCGCTCATCTTTAAGGGTAAGCCTACGGCGCCGGGTAAAA
CCCCCACTGCCAACAGCATCGAACGAGAGTTCAAGGTGGGCAACGACAAG
AAGGGGATAGCATACCCTCAGAGCGTTGTGTACGCCGTGGACGACAATGC
GTGGCACACGCAGCGCGTCTTCAGGGATGTTTGGCTCCCCCAAGTGTGGA
ACCGGCGCCCGGGTCGCGATGGGGTCCTGGGCAACTACCGTCAGCCGGAC
ACGCTGCTATCGTGGGCCGATTACACCGTGCACAAGACAGCCCTGTGCAA
GGAAGCGATGGATAAGTCCAACACGACGCTGTTTTTCGTCCCCGGAGGCC
TAACGCCCAAGATCCAGCCTTGCGATGGACTTATCAACAAGCTGTTCAAT
TCCAACATGTCCAGGCTGTACGACAACCCCATGGCCTCCACCGACGCCGT
GCGCAACGACCGCGGCTACCCGGATCCCCCATCGAGGGGATTGCTCGCGC
AGTGGGTGAAGAAAGCGTGGGATGAAGTGGACCCTGAGAGCATTCGTTCG
AGCTGGAGGAAGGCTGGCATGACCCTTGCCTTCGATGGATCTGAGGACGA
GGCGTGGGCCAACAAGGAGCTCAACTCCGACGCCCAAGGGAAACCACTTC
GTGCAGACGGCGACGCGGCCGCTGCCGGCGTAGAGGAGGCTGACCCATCG
GAGGAGGGGGAGACGATGGCCGACTTGTTGGAAGTGTTGGAAATCGACGA
CGATGACAGCTTGGAAGATGGCGAAGGCAACGATGACTCGGAGGTCGAGG
CCATGGCAGACTTGCCGGGGGCGGACATTGTTTGCATAGACTGGGTGTCT
TGTCTGGTATCTACCTACCGTGGCCGGNTGGAGTGGTGTGAGCCACCCTA
G back to topprotein sequence of EsuBft1010_10a-0001 >EsuBft1010_10 ID=EsuBft1010_10|Name=EsuBft1010_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=466bp
MFPGESEEWTDGFGGHLDGTPAEGKGKGKRKREPLELEPPNFPIKFGGGP
KRKRRFLGKNRVSLRAVTRQGQKLPSGWPAITMKAVKEWRALRHGGIDGA
TSSAPSKPPLLFKEEQSYSMDETAVWMEPAGTSTVAHTGQKEVAIKTGGK
EKLRITAVLAANMKGGKLPPPLIFKGKPTAPGKTPTANSIEREFKVGNDK
KGIAYPQSVVYAVDDNAWHTQRVFRDVWLPQVWNRRPGRDGVLGNYRQPD
TLLSWADYTVHKTALCKEAMDKSNTTLFFVPGGLTPKIQPCDGLINKLFN
SNMSRLYDNPMASTDAVRNDRGYPDPPSRGLLAQWVKKAWDEVDPESIRS
SWRKAGMTLAFDGSEDEAWANKELNSDAQGKPLRADGDAAAAGVEEADPS
EEGETMADLLEVLEIDDDDSLEDGEGNDDSEVEAMADLPGADIVCIDWVS
CLVSTYRGRXEWCEPP back to topmRNA from alignment at Scaffold_54:66650..69003+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1010_10a-0001 ID=EsuBft1010_10a-0001|Name=EsuBft1010_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2354bp|location=Sequence derived from alignment at Scaffold_54:66650..69003+ (Ectocarpus subulatus male Bft15b)
ATGTTTCCTGGAGAGTCAGAGGAGTGGACAGATGGTTTCGGTGGGCATCT
CGACGGCACGCCGGCCGAGGGCAAGGGCAAGGGCAAGAGGAAAAGAGAGC
CGTTGGAATTGGAGCCACCAAACTTCCCCATTAAGTTTGGTGGTGGCCCG
AAACGCAAGCGGTACGATTTGGAATTCAAAGTAAACGCCATTAAGTACGC
GACCATGCAAAGCCCGGGGAGCTTTGGTTCGGCCCGAGGCCTGCAACGAA
CGACCTGGAGGGCAGTAGAAAGTACCGCAGCAAGCAGATTCACTGGTGCA
GGAGGTTCCTTGGGAAGAACCGGGTGTCATTACGGGCGGTTACCAGGCAA
GGCCAGAAACTCCCTTCCGGGTGGCCTGCGATTACCATGAAAGCCGTCAA
GGAATGGAGGGCGCTTCGTCACGGAGGAATCGACGGTGCAACGAGCAGTG
CGCCTTCGAAGCCACCTCTGTTGTTCAAGGAGGAGCAGAGCTACAGCATG
GATGAAACTGCTGTGTGGATGGAGCCCGCTGGCACGTCGACCGTGGCGGT
GAGTTCAAATAGTGTTGCTTTGAATCATGTGCCTGTCTGATCGTTTCTTC
GCATTCCGTACAAACAGTGGGCATTGTTATGCCATATTTCTTGCCGCATA
CCTACTCCAGTGTCCAGCCAGTAAGGCCAGACGACGTTGGTATTGTGCTT
ACCACTCGCTTCCATCATCACTGTACTGCAAAACCTATACGTCACTTTGT
GCGTGAACAGCTGTCATTCTCATCCACAAAATCGACTTTTTTCGTCGCCT
CTGCTTTCTCTATTGCTTTTTGCTTTTTATTTTTGTCGTTCGCAGCACAC
CGGTCAGAAAGAGGTGGCCATCAAAACCGGTGGAAAGGAAAAGTTGCGGA
TCACTGCCGTGCTTGCCGCAAACATGAAGGGCGGCAAACTCCCGCCGCCG
CTCATCTTTAAGGGTAAGCCTACGGCGCCGGGTAAAACCCCCACTGCCAA
CAGCATCGAACGAGAGTTCAAGGTGGGCAACGACAAGAAGGGGATAGCAT
ACCCTCAGAGCGTTGTGTACGCCGTGGACGACAATGCGTGGCACACGCAG
CGCGTCTTCAGGGATGTTTGGCTCCCCCAAGTGTGGAACCGGCGCCCGGG
TCGCGATGGGGTCCTGGGCAACTACCGTCAGCCGGACACGCTGCTATCGT
GGGCCGATTACACCGTGCACAAGACAGCCCTGTGCAAGGAAGCGATGGAT
AAGTCCAACACGACGCTGTTTTTCGTCCCCGGAGGCCTAACGCCCAAGAT
CCAGCCTTGCGATGGACTTATCAACAAGCTGTTCAATTCCAACATGTCCA
GGCTGTACGACAACCCCATGGCCTCCACCGACGCCGTGCGCAACGACCGC
GGCTACCCGGATCCCCCATCGAGGGGATTGCTCGCGCAGTGGGTGAAGAA
AGCGTGGGATGAAGTGGACCCTGAGAGCATTCGTTCGAGCTGGAGGAAGG
CTGGCATGACCCTTGCCTTCGATGGATCTGAGGACGAGGCGTGGGCCAAC
AAGGAGCTCAACTCCGACGCCCAAGGGAAACCACTTCGTGCAGACGGCGA
CGCGGCCGCTGCCGGCGTAGAGGAGGCTGACCCATCGGAGGAGGGGGAGA
CGATGGCCGACTTGTTGGAAGTGTTGGAAATCGACGACGATGACAGCTTG
GAAGATGGCGAAGGCAACGATGACTCGGAGGTCGAGGCCATGGCAGACTT
GCCGGGGGCGGACATTGTTTGCATAGACTGGGTGTCTTGTCTGGTATCTA
CCTACCGTGGTTGCATGCCATGGTCAAGTCAACCAAAGCTGCTATTAGAG
CCAATTTGTCCTGTGTTTCATATATTTCGGTAGACTAGTCGCTTGTCCTC
TTGGTTTCTAGCTTTGGTTGATATGTAGCTGGCACTTGCTTGCGTCCTAT
GTGGTTCCAGCTTGAGTGGTGAACGCAAGTCTTGCGAGTGGTTGCGTCGT
CCAGGTACCTGTGTGCTGTCGTTTGGTCGCACACAACACCGGAACAACCG
CTTTGAGGCATCGGTGCTACGTCTTCGTTGTGTACGTATGCGAAGAATTT
CCAAAGGGTACTGCGAAAATGCACGTGGGAAAAGCATGTACGTGATGGAG
TGGTGTGAGCCACCCTAGCTATCACACCTGTTTTACACCCCTTCACGCCC
TTTGTAGATGGGTGTCTCCTTGGAGCGCACTGCATCACTCGGGCGACATT
ATTATCACACCCCCGTAGGTAGGGTCCTGTGAGCGCACTGCAACCACACG
GGCGACATTATCACACCCCCGGCAGGCCGGNTGGAGTGGTGTGAGCCACC
CTAG back to topCoding sequence (CDS) from alignment at Scaffold_54:66650..69003+ >EsuBft1010_10a-0001 ID=EsuBft1010_10a-0001|Name=EsuBft1010_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1401bp|location=Sequence derived from alignment at Scaffold_54:66650..69003+ (Ectocarpus subulatus male Bft15b)
ATGTTTCCTGGAGAGTCAGAGGAGTGGACAGATGGTTTCGGTGGGCATCT
CGACGGCACGCCGGCCGAGGGCAAGGGCAAGGGCAAGAGGAAAAGAGAGC
CGTTGGAATTGGAGCCACCAAACTTCCCCATTAAGTTTGGTGGTGGCCCG
AAACGCAAGCGGAGGTTCCTTGGGAAGAACCGGGTGTCATTACGGGCGGT
TACCAGGCAAGGCCAGAAACTCCCTTCCGGGTGGCCTGCGATTACCATGA
AAGCCGTCAAGGAATGGAGGGCGCTTCGTCACGGAGGAATCGACGGTGCA
ACGAGCAGTGCGCCTTCGAAGCCACCTCTGTTGTTCAAGGAGGAGCAGAG
CTACAGCATGGATGAAACTGCTGTGTGGATGGAGCCCGCTGGCACGTCGA
CCGTGGCGCACACCGGTCAGAAAGAGGTGGCCATCAAAACCGGTGGAAAG
GAAAAGTTGCGGATCACTGCCGTGCTTGCCGCAAACATGAAGGGCGGCAA
ACTCCCGCCGCCGCTCATCTTTAAGGGTAAGCCTACGGCGCCGGGTAAAA
CCCCCACTGCCAACAGCATCGAACGAGAGTTCAAGGTGGGCAACGACAAG
AAGGGGATAGCATACCCTCAGAGCGTTGTGTACGCCGTGGACGACAATGC
GTGGCACACGCAGCGCGTCTTCAGGGATGTTTGGCTCCCCCAAGTGTGGA
ACCGGCGCCCGGGTCGCGATGGGGTCCTGGGCAACTACCGTCAGCCGGAC
ACGCTGCTATCGTGGGCCGATTACACCGTGCACAAGACAGCCCTGTGCAA
GGAAGCGATGGATAAGTCCAACACGACGCTGTTTTTCGTCCCCGGAGGCC
TAACGCCCAAGATCCAGCCTTGCGATGGACTTATCAACAAGCTGTTCAAT
TCCAACATGTCCAGGCTGTACGACAACCCCATGGCCTCCACCGACGCCGT
GCGCAACGACCGCGGCTACCCGGATCCCCCATCGAGGGGATTGCTCGCGC
AGTGGGTGAAGAAAGCGTGGGATGAAGTGGACCCTGAGAGCATTCGTTCG
AGCTGGAGGAAGGCTGGCATGACCCTTGCCTTCGATGGATCTGAGGACGA
GGCGTGGGCCAACAAGGAGCTCAACTCCGACGCCCAAGGGAAACCACTTC
GTGCAGACGGCGACGCGGCCGCTGCCGGCGTAGAGGAGGCTGACCCATCG
GAGGAGGGGGAGACGATGGCCGACTTGTTGGAAGTGTTGGAAATCGACGA
CGATGACAGCTTGGAAGATGGCGAAGGCAACGATGACTCGGAGGTCGAGG
CCATGGCAGACTTGCCGGGGGCGGACATTGTTTGCATAGACTGGGTGTCT
TGTCTGGTATCTACCTACCGTGGCCGGNTGGAGTGGTGTGAGCCACCCTA
G back to top
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