EsuBft1010_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1010_10a-0001
Unique Name	EsuBft1010_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_54	contig	Scaffold_54:66650..69003 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	588596.U9SZ56
ProteomeId	EsuBft1010_10
Protein domains	IPR004875
Protein domains	PTHR19303
Owner	apollo_admin@sb-roscoff.fr
Note	pogo transposable element with krab domain os:mus musculus gn:pogk pe:2 sv:2 [Automatic annotation]
Nb exon	4
Max annot lvl	4751\|Fungi
Length	1401
Hectar predicted targeting category	other localisation
Evalue	1.22e-32
EggNOG OGs	KOG3105@1\|root,KOG3105@2759\|Eukaryota,38I47@33154\|Opisthokonta,3P9QG@4751\|Fungi
Date last modified	2016-06-14
Date creation	2016-06-14
Description	DDE superfamily endonuclease
COG category	BD

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1010_10a	EsuBft1010_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_54 66650..69003 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1010_10a-0001-exon	agat-exon-109826	Ectocarpus subulatus male Bft15b	exon	Scaffold_54 66650..66810 +
EsuBft1010_10a-0001-exon	agat-exon-109825	Ectocarpus subulatus male Bft15b	exon	Scaffold_54 66951..67197 +
EsuBft1010_10a-0001-exon	EsuBft1010_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_54 67495..68458 +
EsuBft1010_10a-0001-exon	agat-exon-109827	Ectocarpus subulatus male Bft15b	exon	Scaffold_54 68975..69003 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1010_10a-0001-cds	EsuBft1010_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_54 66650..66810 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1010_10a-0001	EsuBft1010_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_54 66650..69003 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_54:66650..69003+
coding sequence from alignment at Scaffold_54:66650..69003+

spliced messenger RNA

>EsuBft1010_10a-0001 ID=EsuBft1010_10a-0001|Name=EsuBft1010_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1401bp|location=Sequence derived from alignment at Scaffold_54:66650..69003+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCCTGGAGAGTCAGAGGAGTGGACAGATGGTTTCGGTGGGCATCT
CGACGGCACGCCGGCCGAGGGCAAGGGCAAGGGCAAGAGGAAAAGAGAGC
CGTTGGAATTGGAGCCACCAAACTTCCCCATTAAGTTTGGTGGTGGCCCG
AAACGCAAGCGGAGGTTCCTTGGGAAGAACCGGGTGTCATTACGGGCGGT
TACCAGGCAAGGCCAGAAACTCCCTTCCGGGTGGCCTGCGATTACCATGA
AAGCCGTCAAGGAATGGAGGGCGCTTCGTCACGGAGGAATCGACGGTGCA
ACGAGCAGTGCGCCTTCGAAGCCACCTCTGTTGTTCAAGGAGGAGCAGAG
CTACAGCATGGATGAAACTGCTGTGTGGATGGAGCCCGCTGGCACGTCGA
CCGTGGCGCACACCGGTCAGAAAGAGGTGGCCATCAAAACCGGTGGAAAG
GAAAAGTTGCGGATCACTGCCGTGCTTGCCGCAAACATGAAGGGCGGCAA
ACTCCCGCCGCCGCTCATCTTTAAGGGTAAGCCTACGGCGCCGGGTAAAA
CCCCCACTGCCAACAGCATCGAACGAGAGTTCAAGGTGGGCAACGACAAG
AAGGGGATAGCATACCCTCAGAGCGTTGTGTACGCCGTGGACGACAATGC
GTGGCACACGCAGCGCGTCTTCAGGGATGTTTGGCTCCCCCAAGTGTGGA
ACCGGCGCCCGGGTCGCGATGGGGTCCTGGGCAACTACCGTCAGCCGGAC
ACGCTGCTATCGTGGGCCGATTACACCGTGCACAAGACAGCCCTGTGCAA
GGAAGCGATGGATAAGTCCAACACGACGCTGTTTTTCGTCCCCGGAGGCC
TAACGCCCAAGATCCAGCCTTGCGATGGACTTATCAACAAGCTGTTCAAT
TCCAACATGTCCAGGCTGTACGACAACCCCATGGCCTCCACCGACGCCGT
GCGCAACGACCGCGGCTACCCGGATCCCCCATCGAGGGGATTGCTCGCGC
AGTGGGTGAAGAAAGCGTGGGATGAAGTGGACCCTGAGAGCATTCGTTCG
AGCTGGAGGAAGGCTGGCATGACCCTTGCCTTCGATGGATCTGAGGACGA
GGCGTGGGCCAACAAGGAGCTCAACTCCGACGCCCAAGGGAAACCACTTC
GTGCAGACGGCGACGCGGCCGCTGCCGGCGTAGAGGAGGCTGACCCATCG
GAGGAGGGGGAGACGATGGCCGACTTGTTGGAAGTGTTGGAAATCGACGA
CGATGACAGCTTGGAAGATGGCGAAGGCAACGATGACTCGGAGGTCGAGG
CCATGGCAGACTTGCCGGGGGCGGACATTGTTTGCATAGACTGGGTGTCT
TGTCTGGTATCTACCTACCGTGGCCGGNTGGAGTGGTGTGAGCCACCCTA
G

protein sequence of EsuBft1010_10a-0001

>EsuBft1010_10 ID=EsuBft1010_10|Name=EsuBft1010_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=466bp
MFPGESEEWTDGFGGHLDGTPAEGKGKGKRKREPLELEPPNFPIKFGGGP
KRKRRFLGKNRVSLRAVTRQGQKLPSGWPAITMKAVKEWRALRHGGIDGA
TSSAPSKPPLLFKEEQSYSMDETAVWMEPAGTSTVAHTGQKEVAIKTGGK
EKLRITAVLAANMKGGKLPPPLIFKGKPTAPGKTPTANSIEREFKVGNDK
KGIAYPQSVVYAVDDNAWHTQRVFRDVWLPQVWNRRPGRDGVLGNYRQPD
TLLSWADYTVHKTALCKEAMDKSNTTLFFVPGGLTPKIQPCDGLINKLFN
SNMSRLYDNPMASTDAVRNDRGYPDPPSRGLLAQWVKKAWDEVDPESIRS
SWRKAGMTLAFDGSEDEAWANKELNSDAQGKPLRADGDAAAAGVEEADPS
EEGETMADLLEVLEIDDDDSLEDGEGNDDSEVEAMADLPGADIVCIDWVS
CLVSTYRGRXEWCEPP

mRNA from alignment at Scaffold_54:66650..69003+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1010_10a-0001 ID=EsuBft1010_10a-0001|Name=EsuBft1010_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2354bp|location=Sequence derived from alignment at Scaffold_54:66650..69003+ (Ectocarpus subulatus male Bft15b)
ATGTTTCCTGGAGAGTCAGAGGAGTGGACAGATGGTTTCGGTGGGCATCT
CGACGGCACGCCGGCCGAGGGCAAGGGCAAGGGCAAGAGGAAAAGAGAGC
CGTTGGAATTGGAGCCACCAAACTTCCCCATTAAGTTTGGTGGTGGCCCG
AAACGCAAGCGGTACGATTTGGAATTCAAAGTAAACGCCATTAAGTACGC
GACCATGCAAAGCCCGGGGAGCTTTGGTTCGGCCCGAGGCCTGCAACGAA
CGACCTGGAGGGCAGTAGAAAGTACCGCAGCAAGCAGATTCACTGGTGCA
GGAGGTTCCTTGGGAAGAACCGGGTGTCATTACGGGCGGTTACCAGGCAA
GGCCAGAAACTCCCTTCCGGGTGGCCTGCGATTACCATGAAAGCCGTCAA
GGAATGGAGGGCGCTTCGTCACGGAGGAATCGACGGTGCAACGAGCAGTG
CGCCTTCGAAGCCACCTCTGTTGTTCAAGGAGGAGCAGAGCTACAGCATG
GATGAAACTGCTGTGTGGATGGAGCCCGCTGGCACGTCGACCGTGGCGGT
GAGTTCAAATAGTGTTGCTTTGAATCATGTGCCTGTCTGATCGTTTCTTC
GCATTCCGTACAAACAGTGGGCATTGTTATGCCATATTTCTTGCCGCATA
CCTACTCCAGTGTCCAGCCAGTAAGGCCAGACGACGTTGGTATTGTGCTT
ACCACTCGCTTCCATCATCACTGTACTGCAAAACCTATACGTCACTTTGT
GCGTGAACAGCTGTCATTCTCATCCACAAAATCGACTTTTTTCGTCGCCT
CTGCTTTCTCTATTGCTTTTTGCTTTTTATTTTTGTCGTTCGCAGCACAC
CGGTCAGAAAGAGGTGGCCATCAAAACCGGTGGAAAGGAAAAGTTGCGGA
TCACTGCCGTGCTTGCCGCAAACATGAAGGGCGGCAAACTCCCGCCGCCG
CTCATCTTTAAGGGTAAGCCTACGGCGCCGGGTAAAACCCCCACTGCCAA
CAGCATCGAACGAGAGTTCAAGGTGGGCAACGACAAGAAGGGGATAGCAT
ACCCTCAGAGCGTTGTGTACGCCGTGGACGACAATGCGTGGCACACGCAG
CGCGTCTTCAGGGATGTTTGGCTCCCCCAAGTGTGGAACCGGCGCCCGGG
TCGCGATGGGGTCCTGGGCAACTACCGTCAGCCGGACACGCTGCTATCGT
GGGCCGATTACACCGTGCACAAGACAGCCCTGTGCAAGGAAGCGATGGAT
AAGTCCAACACGACGCTGTTTTTCGTCCCCGGAGGCCTAACGCCCAAGAT
CCAGCCTTGCGATGGACTTATCAACAAGCTGTTCAATTCCAACATGTCCA
GGCTGTACGACAACCCCATGGCCTCCACCGACGCCGTGCGCAACGACCGC
GGCTACCCGGATCCCCCATCGAGGGGATTGCTCGCGCAGTGGGTGAAGAA
AGCGTGGGATGAAGTGGACCCTGAGAGCATTCGTTCGAGCTGGAGGAAGG
CTGGCATGACCCTTGCCTTCGATGGATCTGAGGACGAGGCGTGGGCCAAC
AAGGAGCTCAACTCCGACGCCCAAGGGAAACCACTTCGTGCAGACGGCGA
CGCGGCCGCTGCCGGCGTAGAGGAGGCTGACCCATCGGAGGAGGGGGAGA
CGATGGCCGACTTGTTGGAAGTGTTGGAAATCGACGACGATGACAGCTTG
GAAGATGGCGAAGGCAACGATGACTCGGAGGTCGAGGCCATGGCAGACTT
GCCGGGGGCGGACATTGTTTGCATAGACTGGGTGTCTTGTCTGGTATCTA
CCTACCGTGGTTGCATGCCATGGTCAAGTCAACCAAAGCTGCTATTAGAG
CCAATTTGTCCTGTGTTTCATATATTTCGGTAGACTAGTCGCTTGTCCTC
TTGGTTTCTAGCTTTGGTTGATATGTAGCTGGCACTTGCTTGCGTCCTAT
GTGGTTCCAGCTTGAGTGGTGAACGCAAGTCTTGCGAGTGGTTGCGTCGT
CCAGGTACCTGTGTGCTGTCGTTTGGTCGCACACAACACCGGAACAACCG
CTTTGAGGCATCGGTGCTACGTCTTCGTTGTGTACGTATGCGAAGAATTT
CCAAAGGGTACTGCGAAAATGCACGTGGGAAAAGCATGTACGTGATGGAG
TGGTGTGAGCCACCCTAGCTATCACACCTGTTTTACACCCCTTCACGCCC
TTTGTAGATGGGTGTCTCCTTGGAGCGCACTGCATCACTCGGGCGACATT
ATTATCACACCCCCGTAGGTAGGGTCCTGTGAGCGCACTGCAACCACACG
GGCGACATTATCACACCCCCGGCAGGCCGGNTGGAGTGGTGTGAGCCACC
CTAG

Coding sequence (CDS) from alignment at Scaffold_54:66650..69003+

>EsuBft1010_10a-0001 ID=EsuBft1010_10a-0001|Name=EsuBft1010_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1401bp|location=Sequence derived from alignment at Scaffold_54:66650..69003+ (Ectocarpus subulatus male Bft15b)
ATGTTTCCTGGAGAGTCAGAGGAGTGGACAGATGGTTTCGGTGGGCATCT
CGACGGCACGCCGGCCGAGGGCAAGGGCAAGGGCAAGAGGAAAAGAGAGC
CGTTGGAATTGGAGCCACCAAACTTCCCCATTAAGTTTGGTGGTGGCCCG
AAACGCAAGCGGAGGTTCCTTGGGAAGAACCGGGTGTCATTACGGGCGGT
TACCAGGCAAGGCCAGAAACTCCCTTCCGGGTGGCCTGCGATTACCATGA
AAGCCGTCAAGGAATGGAGGGCGCTTCGTCACGGAGGAATCGACGGTGCA
ACGAGCAGTGCGCCTTCGAAGCCACCTCTGTTGTTCAAGGAGGAGCAGAG
CTACAGCATGGATGAAACTGCTGTGTGGATGGAGCCCGCTGGCACGTCGA
CCGTGGCGCACACCGGTCAGAAAGAGGTGGCCATCAAAACCGGTGGAAAG
GAAAAGTTGCGGATCACTGCCGTGCTTGCCGCAAACATGAAGGGCGGCAA
ACTCCCGCCGCCGCTCATCTTTAAGGGTAAGCCTACGGCGCCGGGTAAAA
CCCCCACTGCCAACAGCATCGAACGAGAGTTCAAGGTGGGCAACGACAAG
AAGGGGATAGCATACCCTCAGAGCGTTGTGTACGCCGTGGACGACAATGC
GTGGCACACGCAGCGCGTCTTCAGGGATGTTTGGCTCCCCCAAGTGTGGA
ACCGGCGCCCGGGTCGCGATGGGGTCCTGGGCAACTACCGTCAGCCGGAC
ACGCTGCTATCGTGGGCCGATTACACCGTGCACAAGACAGCCCTGTGCAA
GGAAGCGATGGATAAGTCCAACACGACGCTGTTTTTCGTCCCCGGAGGCC
TAACGCCCAAGATCCAGCCTTGCGATGGACTTATCAACAAGCTGTTCAAT
TCCAACATGTCCAGGCTGTACGACAACCCCATGGCCTCCACCGACGCCGT
GCGCAACGACCGCGGCTACCCGGATCCCCCATCGAGGGGATTGCTCGCGC
AGTGGGTGAAGAAAGCGTGGGATGAAGTGGACCCTGAGAGCATTCGTTCG
AGCTGGAGGAAGGCTGGCATGACCCTTGCCTTCGATGGATCTGAGGACGA
GGCGTGGGCCAACAAGGAGCTCAACTCCGACGCCCAAGGGAAACCACTTC
GTGCAGACGGCGACGCGGCCGCTGCCGGCGTAGAGGAGGCTGACCCATCG
GAGGAGGGGGAGACGATGGCCGACTTGTTGGAAGTGTTGGAAATCGACGA
CGATGACAGCTTGGAAGATGGCGAAGGCAACGATGACTCGGAGGTCGAGG
CCATGGCAGACTTGCCGGGGGCGGACATTGTTTGCATAGACTGGGTGTCT
TGTCTGGTATCTACCTACCGTGGCCGGNTGGAGTGGTGTGAGCCACCCTA
G