EsuBft1007_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1007_11a-0001
Unique NameEsuBft1007_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_519contigScaffold_519:245653..246536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog15368.BRADI5G22850.1
ProteomeIdEsuBft1007_11
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsPTHR11439
Protein domainsIPR012337
Protein domainsIPR001584
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl35493|Streptophyta
Length817
Hectar predicted targeting categoryother localisation
Evalue3.25e-24
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M2IR@4447|Liliopsida,3IKX9@38820|Poales
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K20093
EC3.6.4.12
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
BRITEko00000,ko01000,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0003824
GO0015074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1007_11aEsuBft1007_11aEctocarpus subulatus male Bft15bgeneScaffold_519 245653..246536 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1007_11a-0001-exonEsuBft1007_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_519 245653..245671 -
EsuBft1007_11a-0001-exonagat-exon-97113Ectocarpus subulatus male Bft15bexonScaffold_519 245739..246536 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1007_11a-0001-cdsEsuBft1007_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_519 245653..245671 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1007_11a-0001-exonagat-five_prime_utr-30Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_519 246515..246536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1007_11a-0001EsuBft1007_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_519 245653..246514 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1007_11a-0001 ID=EsuBft1007_11a-0001|Name=EsuBft1007_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=817bp|location=Sequence derived from alignment at Scaffold_519:245653..246536- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCTACGAGTTTTGAGACTTGATGTTTGAGTCTGGATTTGCCAATGTCT
TCGATGATGTTGCTTTCGCCGTTCCCGTTATGGCCCCGGGCAAGCGCCCT
TTTTCGGTGGGGAAACCCACCAAGATTATTGACGTTAACCTTCTCCATGT
TTCGTCCTCCCACGCCAATGAGTTTCTTTTGCGTGAGCTTGCGAAGCAGC
ACGGTCTCCGACTGACCGGTGTCCTGCAGCCTTGTGGTGGATGCCTGCAG
GCGAAGGGGAAGAAGGCGGGCGTGCCTCACCAATTGGGCACGCGCGCGGA
GCGGCCGCACGATCTTTGGCACATCGATCTGTGTGGGCCGATGACGGCCT
CGCTGGGGGGTTCGTTTTTCATGATTATGTTCGTGGACAGCTTCTCGCGG
TGGATGAAGCTGTACGGGATGAGGCGCAAGTCGGACACCCTCGCCTTCGT
CAAGAAGTTCCTCGCCGGCATGAGTGGCACCGGTGTCCCTCGCTCTTTCC
GGATGGACAACGGGGGGGAGTTCATCGGACGCGACTTCATCGCCTTCTGT
GACAACGCCGGCATCCGCCGTACGTACACGGCGCCGGGCACCCCGCAGCA
GAATGGTCCGGCGGAGAGTGCGATCTGGCGCGTGAACAAGGCCGGCCACG
CCGCTCGTCTCGAGGCACCCCGCCTGTTCCCCAAGATCGACTTCACCCGC
GTCCCCGGCTTCGGGCGCGATGGCGAGCGACTCTGGCTAGAATCGTGTCA
CTGGGCTGCCGGCGGCTTCAACCGTTCTCCGACCAAGGCAAACGTCGGCC
GGGGTATATGCGTGTGA
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protein sequence of EsuBft1007_11a-0001

>EsuBft1007_11 ID=EsuBft1007_11|Name=EsuBft1007_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=264bp
MFESGFANVFDDVAFAVPVMAPGKRPFSVGKPTKIIDVNLLHVSSSHANE
FLLRELAKQHGLRLTGVLQPCGGCLQAKGKKAGVPHQLGTRAERPHDLWH
IDLCGPMTASLGGSFFMIMFVDSFSRWMKLYGMRRKSDTLAFVKKFLAGM
SGTGVPRSFRMDNGGEFIGRDFIAFCDNAGIRRTYTAPGTPQQNGPAESA
IWRVNKAGHAARLEAPRLFPKIDFTRVPGFGRDGERLWLESCHWAAGGFN
RSPTKANVGRGICV
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mRNA from alignment at Scaffold_519:245653..246536-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1007_11a-0001 ID=EsuBft1007_11a-0001|Name=EsuBft1007_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=884bp|location=Sequence derived from alignment at Scaffold_519:245653..246536- (Ectocarpus subulatus male Bft15b)
CCCCTACGAGTTTTGAGACTTGATGTTTGAGTCTGGATTTGCCAATGTCT
TCGATGATGTTGCTTTCGCCGTTCCCGTTATGGCCCCGGGCAAGCGCCCT
TTTTCGGTGGGGAAACCCACCAAGATTATTGACGTTAACCTTCTCCATGT
TTCGTCCTCCCACGCCAATGAGTTTCTTTTGCGTGAGCTTGCGAAGCAGC
ACGGTCTCCGACTGACCGGTGTCCTGCAGCCTTGTGGTGGATGCCTGCAG
GCGAAGGGGAAGAAGGCGGGCGTGCCTCACCAATTGGGCACGCGCGCGGA
GCGGCCGCACGATCTTTGGCACATCGATCTGTGTGGGCCGATGACGGCCT
CGCTGGGGGGTTCGTTTTTCATGATTATGTTCGTGGACAGCTTCTCGCGG
TGGATGAAGCTGTACGGGATGAGGCGCAAGTCGGACACCCTCGCCTTCGT
CAAGAAGTTCCTCGCCGGCATGAGTGGCACCGGTGTCCCTCGCTCTTTCC
GGATGGACAACGGGGGGGAGTTCATCGGACGCGACTTCATCGCCTTCTGT
GACAACGCCGGCATCCGCCGTACGTACACGGCGCCGGGCACCCCGCAGCA
GAATGGTCCGGCGGAGAGTGCGATCTGGCGCGTGAACAAGGCCGGCCACG
CCGCTCGTCTCGAGGCACCCCGCCTGTTCCCCAAGATCGACTTCACCCGC
GTCCCCGGCTTCGGGCGCGATGGCGAGCGACTCTGGCTAGAATCGTGTCA
CTGGGCTGCCGGCGGCTTCAACCGTTCTCCGACCAAGGCAAACGTCGGGT
ACAAGTCGCCGCACGAGCTCTTCACCGGTCGCCCGCCACCGCTCCAGATC
GTCCCGTTCTTGCAGCCGGGGTATATGCGTGTGA
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Coding sequence (CDS) from alignment at Scaffold_519:245653..246536-

>EsuBft1007_11a-0001 ID=EsuBft1007_11a-0001|Name=EsuBft1007_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=795bp|location=Sequence derived from alignment at Scaffold_519:245653..246536- (Ectocarpus subulatus male Bft15b)
ATGTTTGAGTCTGGATTTGCCAATGTCTTCGATGATGTTGCTTTCGCCGT
TCCCGTTATGGCCCCGGGCAAGCGCCCTTTTTCGGTGGGGAAACCCACCA
AGATTATTGACGTTAACCTTCTCCATGTTTCGTCCTCCCACGCCAATGAG
TTTCTTTTGCGTGAGCTTGCGAAGCAGCACGGTCTCCGACTGACCGGTGT
CCTGCAGCCTTGTGGTGGATGCCTGCAGGCGAAGGGGAAGAAGGCGGGCG
TGCCTCACCAATTGGGCACGCGCGCGGAGCGGCCGCACGATCTTTGGCAC
ATCGATCTGTGTGGGCCGATGACGGCCTCGCTGGGGGGTTCGTTTTTCAT
GATTATGTTCGTGGACAGCTTCTCGCGGTGGATGAAGCTGTACGGGATGA
GGCGCAAGTCGGACACCCTCGCCTTCGTCAAGAAGTTCCTCGCCGGCATG
AGTGGCACCGGTGTCCCTCGCTCTTTCCGGATGGACAACGGGGGGGAGTT
CATCGGACGCGACTTCATCGCCTTCTGTGACAACGCCGGCATCCGCCGTA
CGTACACGGCGCCGGGCACCCCGCAGCAGAATGGTCCGGCGGAGAGTGCG
ATCTGGCGCGTGAACAAGGCCGGCCACGCCGCTCGTCTCGAGGCACCCCG
CCTGTTCCCCAAGATCGACTTCACCCGCGTCCCCGGCTTCGGGCGCGATG
GCGAGCGACTCTGGCTAGAATCGTGTCACTGGGCTGCCGGCGGCTTCAAC
CGTTCTCCGACCAAGGCAAACGTCGGCCGGGGTATATGCGTGTGA
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