Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 15368.BRADI5G22850.1 |
| ProteomeId | EsuBft1007_11 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | PTHR11439 |
| Protein domains | IPR012337 |
| Protein domains | IPR001584 |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 35493|Streptophyta |
| Length | 817 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.25e-24 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M2IR@4447|Liliopsida,3IKX9@38820|Poales |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| KEGG ko | ko:K20093 |
| EC | 3.6.4.12 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
| BRITE | ko00000,ko01000,ko03036 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
| GO | 0003824 |
| GO | 0015074 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1007_11a-0001 ID=EsuBft1007_11a-0001|Name=EsuBft1007_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=817bp|location=Sequence derived from alignment at Scaffold_519:245653..246536- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CCCCTACGAGTTTTGAGACTTGATGTTTGAGTCTGGATTTGCCAATGTCT
TCGATGATGTTGCTTTCGCCGTTCCCGTTATGGCCCCGGGCAAGCGCCCT
TTTTCGGTGGGGAAACCCACCAAGATTATTGACGTTAACCTTCTCCATGT
TTCGTCCTCCCACGCCAATGAGTTTCTTTTGCGTGAGCTTGCGAAGCAGC
ACGGTCTCCGACTGACCGGTGTCCTGCAGCCTTGTGGTGGATGCCTGCAG
GCGAAGGGGAAGAAGGCGGGCGTGCCTCACCAATTGGGCACGCGCGCGGA
GCGGCCGCACGATCTTTGGCACATCGATCTGTGTGGGCCGATGACGGCCT
CGCTGGGGGGTTCGTTTTTCATGATTATGTTCGTGGACAGCTTCTCGCGG
TGGATGAAGCTGTACGGGATGAGGCGCAAGTCGGACACCCTCGCCTTCGT
CAAGAAGTTCCTCGCCGGCATGAGTGGCACCGGTGTCCCTCGCTCTTTCC
GGATGGACAACGGGGGGGAGTTCATCGGACGCGACTTCATCGCCTTCTGT
GACAACGCCGGCATCCGCCGTACGTACACGGCGCCGGGCACCCCGCAGCA
GAATGGTCCGGCGGAGAGTGCGATCTGGCGCGTGAACAAGGCCGGCCACG
CCGCTCGTCTCGAGGCACCCCGCCTGTTCCCCAAGATCGACTTCACCCGC
GTCCCCGGCTTCGGGCGCGATGGCGAGCGACTCTGGCTAGAATCGTGTCA
CTGGGCTGCCGGCGGCTTCAACCGTTCTCCGACCAAGGCAAACGTCGGCC
GGGGTATATGCGTGTGA back to topprotein sequence of EsuBft1007_11a-0001 >EsuBft1007_11 ID=EsuBft1007_11|Name=EsuBft1007_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=264bp
MFESGFANVFDDVAFAVPVMAPGKRPFSVGKPTKIIDVNLLHVSSSHANE
FLLRELAKQHGLRLTGVLQPCGGCLQAKGKKAGVPHQLGTRAERPHDLWH
IDLCGPMTASLGGSFFMIMFVDSFSRWMKLYGMRRKSDTLAFVKKFLAGM
SGTGVPRSFRMDNGGEFIGRDFIAFCDNAGIRRTYTAPGTPQQNGPAESA
IWRVNKAGHAARLEAPRLFPKIDFTRVPGFGRDGERLWLESCHWAAGGFN
RSPTKANVGRGICV back to topmRNA from alignment at Scaffold_519:245653..246536- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1007_11a-0001 ID=EsuBft1007_11a-0001|Name=EsuBft1007_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=884bp|location=Sequence derived from alignment at Scaffold_519:245653..246536- (Ectocarpus subulatus male Bft15b)
CCCCTACGAGTTTTGAGACTTGATGTTTGAGTCTGGATTTGCCAATGTCT
TCGATGATGTTGCTTTCGCCGTTCCCGTTATGGCCCCGGGCAAGCGCCCT
TTTTCGGTGGGGAAACCCACCAAGATTATTGACGTTAACCTTCTCCATGT
TTCGTCCTCCCACGCCAATGAGTTTCTTTTGCGTGAGCTTGCGAAGCAGC
ACGGTCTCCGACTGACCGGTGTCCTGCAGCCTTGTGGTGGATGCCTGCAG
GCGAAGGGGAAGAAGGCGGGCGTGCCTCACCAATTGGGCACGCGCGCGGA
GCGGCCGCACGATCTTTGGCACATCGATCTGTGTGGGCCGATGACGGCCT
CGCTGGGGGGTTCGTTTTTCATGATTATGTTCGTGGACAGCTTCTCGCGG
TGGATGAAGCTGTACGGGATGAGGCGCAAGTCGGACACCCTCGCCTTCGT
CAAGAAGTTCCTCGCCGGCATGAGTGGCACCGGTGTCCCTCGCTCTTTCC
GGATGGACAACGGGGGGGAGTTCATCGGACGCGACTTCATCGCCTTCTGT
GACAACGCCGGCATCCGCCGTACGTACACGGCGCCGGGCACCCCGCAGCA
GAATGGTCCGGCGGAGAGTGCGATCTGGCGCGTGAACAAGGCCGGCCACG
CCGCTCGTCTCGAGGCACCCCGCCTGTTCCCCAAGATCGACTTCACCCGC
GTCCCCGGCTTCGGGCGCGATGGCGAGCGACTCTGGCTAGAATCGTGTCA
CTGGGCTGCCGGCGGCTTCAACCGTTCTCCGACCAAGGCAAACGTCGGGT
ACAAGTCGCCGCACGAGCTCTTCACCGGTCGCCCGCCACCGCTCCAGATC
GTCCCGTTCTTGCAGCCGGGGTATATGCGTGTGA back to topCoding sequence (CDS) from alignment at Scaffold_519:245653..246536- >EsuBft1007_11a-0001 ID=EsuBft1007_11a-0001|Name=EsuBft1007_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=795bp|location=Sequence derived from alignment at Scaffold_519:245653..246536- (Ectocarpus subulatus male Bft15b)
ATGTTTGAGTCTGGATTTGCCAATGTCTTCGATGATGTTGCTTTCGCCGT
TCCCGTTATGGCCCCGGGCAAGCGCCCTTTTTCGGTGGGGAAACCCACCA
AGATTATTGACGTTAACCTTCTCCATGTTTCGTCCTCCCACGCCAATGAG
TTTCTTTTGCGTGAGCTTGCGAAGCAGCACGGTCTCCGACTGACCGGTGT
CCTGCAGCCTTGTGGTGGATGCCTGCAGGCGAAGGGGAAGAAGGCGGGCG
TGCCTCACCAATTGGGCACGCGCGCGGAGCGGCCGCACGATCTTTGGCAC
ATCGATCTGTGTGGGCCGATGACGGCCTCGCTGGGGGGTTCGTTTTTCAT
GATTATGTTCGTGGACAGCTTCTCGCGGTGGATGAAGCTGTACGGGATGA
GGCGCAAGTCGGACACCCTCGCCTTCGTCAAGAAGTTCCTCGCCGGCATG
AGTGGCACCGGTGTCCCTCGCTCTTTCCGGATGGACAACGGGGGGGAGTT
CATCGGACGCGACTTCATCGCCTTCTGTGACAACGCCGGCATCCGCCGTA
CGTACACGGCGCCGGGCACCCCGCAGCAGAATGGTCCGGCGGAGAGTGCG
ATCTGGCGCGTGAACAAGGCCGGCCACGCCGCTCGTCTCGAGGCACCCCG
CCTGTTCCCCAAGATCGACTTCACCCGCGTCCCCGGCTTCGGGCGCGATG
GCGAGCGACTCTGGCTAGAATCGTGTCACTGGGCTGCCGGCGGCTTCAAC
CGTTCTCCGACCAAGGCAAACGTCGGCCGGGGTATATGCGTGTGA back to top
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