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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LRS2 |
| ProteomeId | EsuBft100_18 |
| Protein domains | IPR023313 |
| Protein domains | PTHR24067 |
| Protein domains | SM00212 |
| Protein domains | IPR016135 |
| Protein domains | IPR000608 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | nedd8-conjugating enzyme ubc12 os:mus musculus gn:ube2m pe:2 sv:1 [Automatic annotation] |
| Nb exon | 6 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1248 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.77e-146 |
| EggNOG OGs | KOG0420@1|root,KOG0420@2759|Eukaryota |
| Ec32 ortholog description | Ubiquitin-conjugating enzyme E2 |
| Ec32 ortholog | Ec-08_002220.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | UBE2M |
| KEGG rclass | RC00005,RC00726,RC00836,RC00837,RC01726 |
| KEGG ko | ko:K00053,ko:K00573,ko:K00698,ko:K10579 |
| KEGG Reaction | R02335,R03051,R04439,R04440,R05068,R05069,R05071 |
| KEGG Pathway | ko00290,ko00520,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,ko04120,map00290,map00520,map00770,map01100,map01110,map01130,map01210,map01230,map04120 |
| KEGG Module | M00019,M00570 |
| GOs | GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008589,GO:0009719,GO:0009725,GO:0009733,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019788,GO:0023051,GO:0023057,GO:0031974,GO:0031981,GO:0032446,GO:0036211,GO:0042221,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043523,GO:0043525,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045116,GO:0045879,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0061650,GO:0061654,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0140096,GO:1901214,GO:1901216,GO:1901564 |
| EC | 1.1.1.86,2.1.1.77,2.4.1.16 |
| Description | NEDD8 transferase activity |
| COG category | O |
| CAZy | GT2 |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01003,ko04121 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0031227 |
| GO | 0010468 |
| GO | 0070735 |
| GO | 0034613 |
| GO | 0080120 |
| EC | 6.3.2 |
| GO | 0004175 |
| GO | 0006508 |
| GO | 0000166 |
| GO | 0070062 |
| GO | 0004842 |
| GO | 0045879 |
| GO | 0009733 |
| GO | 0006301 |
| GO | 0045116 |
| GO | 0007179 |
| GO | 0005829 |
| GO | 0009793 |
| GO | 0018169 |
| GO | 0016485 |
| GO | 0019788 |
| GO | 0016567 |
| GO | 0043525 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft100_18a-0001 ID=EsuBft100_18a-0001|Name=EsuBft100_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1248bp|location=Sequence derived from alignment at Scaffold_441:275138..278616- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AGTAAACAGCAGTACAAGCAACTCATCACCGCACGTCTGCACCACCTTTG
GCTCTTGGCACCCCGCTCTATCTCGTCCCTCCGTAGTGGAAGCAGTGCCA
GTGCCAGTACCAGCAGTGGGAAAAAGAGGACGCGAAATGATCCGGCTGAA
GAAGAAACAAGATGATGAGAAGGCCGCTGAGGCAGCAGCGGCAATGGAGA
TAGACGAGGAAACACCATCGAACGCGGCCGCTCAACCAAAAGCGGACGAG
GAGAAGGCCGCAGGGAAGCTTCATGTTCTGGGGATTGGCGGCCGAAGGGC
CAAGAGGGGTAGTGCGAAGGCAACCGGAACAAAGAAGACACCGGGAGAGA
TTCGTATACAGAAGGACATTGCGGACTTGGATGGCGGAAGCGTAGCAGAG
ATCACTTTCCCAAACCCCAACAACCTTACTTCCTTCAAGGTCAAGGTGCA
GCCGGACAGCGGGTTCTGGAAGGGCGCGTCGTACCACTTTACCTTTACTA
TTCCTGCGCTGTACCCTCACGACCCACCCAAAGTGCTGTGCGAGACCAAA
ATCTACCACCCCAATATAAACTTGCAGGGGAACGTGTGCCTCAACATCTT
GCGGGAAGACTGGAAGCCGGTGTTGGATATCAACGCGGTTATCTACGGGC
TCATCTACCTGTTCTACGAGCCAAACCCCGAGGACCCCCTCAACCACGAA
GCTGCAGAGCTCTACCGCGACAACATAAGCCAATTCGAGCGAACAGTGAA
GAGGACTCTCGCAGGCTGCGTCATGCACGGGGAGACATTCCAACGACTGA
TTTGACTTGATGACATCCTGCTCAGTGTATGTTTTTGTTGTTTTTGGACG
CTGAGGGTTGAGCAAAGACGTTTTGGGAAGGCTGGCTGAAGACCCTCGAT
CGACTGGCTCGGTCTCCGAAGCAGCCCTTGATCTTGCTCGGATGGCAACT
GCACAGTTGGAAGAGAATGCTCGAATGTATTATACGCGGCGGCGTTATGC
ACACAAGCATCTCCTGCGTTTTCCAGACATGGTTTTGGACCCGCCGTGCA
TTCAACGAACGTAAATTGTGCGATTTCGATGAAGCCGCCAAGAGCTGGGT
TCGCTCGAAATGCATCCTGGTCGGTAACGACAAAAGCTCTCAGACTTGCG
CAACCACTACCATAGTTGACGTGTTTTCGTATTGTTGAGTTGCTTTCTCC
GCCGTAATGTCCCATCTTCATGCGGGTCTCGCACATAAGCACCCCGGG back to topprotein sequence of EsuBft100_18a-0001 >EsuBft100_18 ID=EsuBft100_18|Name=EsuBft100_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=222bp
MIRLKKKQDDEKAAEAAAAMEIDEETPSNAAAQPKADEEKAAGKLHVLGI
GGRRAKRGSAKATGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSF
KVKVQPDSGFWKGASYHFTFTIPALYPHDPPKVLCETKIYHPNINLQGNV
CLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQF
ERTVKRTLAGCVMHGETFQRLI back to topmRNA from alignment at Scaffold_441:275138..278616- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft100_18a-0001 ID=EsuBft100_18a-0001|Name=EsuBft100_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3479bp|location=Sequence derived from alignment at Scaffold_441:275138..278616- (Ectocarpus subulatus male Bft15b)
AGTAAACAGCAGTACAAGCAACTCATCACCGCACGTCTGCACCACCTTTG
GCTCTTGGCACCCCGCTCTATCTCGTCCCTCCGTAGTGGAAGCAGTGCCA
GTGCCAGTACCAGCAGTGGGAAAAAGAGGACGCGAAATGATCCGGCTGAA
GAAGAAACAAGATGTAAGAGCGCTTCGAATTTTTCTCGATTGGCATCAAA
ACTGCTCGCGGTCTCTATTGCCTGCTCTGTCGAGCTCGTTCGTTGTGTCC
GATCAAGAGGACGCTGGCAATCCAGTTTCGAGGTCGAAAAAATTATTGCA
ATTCGGGGCCAACATGGGGACCACTGCCGGCTGTGCTGTAACCCTGTTGT
ATTCTGTGAACGAGTCGAAAGTCCTTTGAGTTCAAACAGAACCTGGGATG
GATGTCCCCACAGGTCCCCTGTCCCCCAACAGTAGTCTGCAGCAGCAGCC
ATGAGTTGCGTAGCATCCAGCCGAGAGTGAGAGTGGTCTTGGGGTTTTGC
ATGCTTCCTTCGTCTCGCCTTGTCACAGAAGATTCTGGCGTGCTTTTGTA
ATGGTGTAATGATATCTGCAAAGTCCGAAGGATGCTCTCTCACTTGGCCC
GCGTTCGCGGTACACCGCTGTGGGAAAAGGGACCGCCGGGTTCCATTCAT
ATGCACAGTCTACAATGAGCATCGCAGGCATGGGACGGCCCATGAGAACG
CGGCAGCAGTTGTTAGACCTACAGTCAGCAATCTTGGAGAATGAGCGTGA
TTAAATTGCATGTTGAAATCGGTCCTGACAAAATCCCTTTCATCCAGTTT
CGCCCACAGCTACAGCAAAAGAGTTGGGTTACTTGAGGCCGGTTTGACCG
CTCGTAGCATGATGTGAGCACAGCGTATGTTGGTTGGTAATGGACTACAT
TCCGGTGCGCCGGTAAATTCACTTGGTGACCTCGTAACCTGACTCTTCAT
GTACACTGCGAGTTGGAATTTCTCTGGAGTGAAAAATCGTAATTTGGGCG
AGGAAAGCACGCTTGGACAGCGCATGTTGCTGTGGTCTTGTATGCGGTGA
GTAATCACAACAATGAGCGAAGGATATGCCGCCCTTCTCGCGTCAAATAC
GGAGGGCGAACACCGCAGGGAGAACGGGAAACATCCGAACAAATCCAGCG
TTTACCTTCCTCCTGTGCTACCCCCGACTGGTACGTCGAACATATACTTG
CAAGTGCCAAGAAGAAAGACAAGACGAAACAGAGACACACACCACACCCC
ACTCACACCCGTCTGTGCTCGACAACAACTTGTGTGCCGAACCGCTTGGT
ACCATGATTTCAGGATGAGAAGGCCGCTGAGGCAGCAGCGGCAATGGAGA
TAGACGAGGAAACACCATCGAACGCGGCCGCTCAACCAAAAGCGGACGAG
GAGAAGGCCGCAGGGAAGCTTCATGTTCTGGGGATTGGCGGCCGAAGGGC
CAAGAGGGGTAGTGCGAAGGCAACCGGAACAAAGAAGACACCGGGAGAGA
TTCGTATACAGAAGGGTGAGTGAGCCTGACAACATGGACGCAGCAGCTAT
TCCATGATAAATGCCTGAGCAGCGAGTACGTTGGAGGACATCTCGTCATC
ATTACATGTTCAGTGTGATCAAGGTTCGATACACACTCATTGAACACCCT
GATTTGTGTTGTACCAATCGTGCTGCTCTCGGAAACTGCAGACATTGCGG
ACTTGGATGGCGGAAGCGTAGCAGAGATCACTTTCCCAAACCCCAACAAC
CTTACTTCCTTCAAGGTCAAGGTGAGAATCGATATGTAGGGCTTTGATCA
TCTCAACTTTTGGAGCTGGCGATCCGAACTTCTTGCACCCCGGGCGCGAT
GTAATGCCAGTTAAGTTCATTAATCATCATCGTGGGCTACGTTGCGGAGA
GACCAAGATCATCGATTGAACGTAATTCACGACCTGGACCAGGCTTCTGG
GTTTTCCATTCATGTTCTTTTATAAGCATGCACGGCGGTTCTTTTTTGGT
TTACGTGACACACCTCTGCGTCCTTTACATCCGCACTTACTCCTCCGATC
GTGCGTGTGGAATGTTTTGCCACAGGTGCAGCCGGACAGCGGGTTCTGGA
AGGGCGCGTCGTACCACTTTACCTTTACTATTCCTGCGCTGTACCCTCAC
GACCCACCCAAAGTGAGCAACGCTACGGTTAAGCACACAACCAGGTTGTG
TACACAACAGTAAGCACAATCGTACGGGCCAGTTTTCCTCAAGCCCTTTT
GCTCCGCCCTCGTCGTTGTCCACTTGTTTCGGATTTTTTTCTGAGAGTTT
TCCCCCGTCCGGTCCTTCCTCGCGGTGCAGGTGCTGTGCGAGACCAAAAT
CTACCACCCCAATATAAACTTGCAGGGGAACGTGTGCCTCAACATCTTGC
GGGAAGACTGGAAGCCGGTGAGTCTTCGTGGCTGTGCTGACATGCGGTTT
TCCGAGTTGTTGGAGTGTTTTTTTATCTCCAACCTGTCCTGTACCTGGAT
TCGAGTATCAGCTGTCTCACGAACAACCTGCTGTCGAGTGTGATGGCCTG
AAACGCCCGGCATGAGTATCTCCAAGTCGGTCTGGTGAGTGGGTTGCACA
CGGCAGGCTTGGCGCAATTGCGATATGTTTTCTCCATGAATGCGGCTTTC
GGCAAGCTTGGTCGCGCGAGGGACCAGTACGTGCTGTGCTTTTGCAGCGC
GAGCGGACTACGCCGTACCAGTATCCCCCGAGGCCGAGCGCCACCGAGGA
TGACTACAGCGGCCGCATTTGGTGTGATTAACTTTGATGTTGGTGTAAAC
TGTTGAACTCGATTGGTTCATAAATGCTGGGATTATCCGTCGCTGTGCAG
GTGTTGGATATCAACGCGGTTATCTACGGGCTCATCTACCTGTTCTACGA
GCCAAACCCCGAGGACCCCCTCAACCACGAAGCTGCAGAGCTCTACCGCG
ACAACATAAGCCAATTCGAGCGAACAGTGAAGAGGACTCTCGCAGGCTGC
GTCATGCACGGGGAGACATTCCAACGACTGATTTGACTTGATGACATCCT
GCTCAGTGTATGTTTTTGTTGTTTTTGGACGCTGAGGGTTGAGCAAAGAC
GTTTTGGGAAGGCTGGCTGAAGACCCTCGATCGACTGGCTCGGTCTCCGA
AGCAGCCCTTGATCTTGCTCGGATGGCAACTGCACAGTTGGAAGAGAATG
CTCGAATGTATTATACGCGGCGGCGTTATGCACACAAGCATCTCCTGCGT
TTTCCAGACATGGTTTTGGACCCGCCGTGCATTCAACGAACGTAAATTGT
GCGATTTCGATGAAGCCGCCAAGAGCTGGGTTCGCTCGAAATGCATCCTG
GTCGGTAACGACAAAAGCTCTCAGACTTGCGCAACCACTACCATAGTTGA
CGTGTTTTCGTATTGTTGAGTTGCTTTCTCCGCCGTAATGTCCCATCTTC
ATGCGGGTCTCGCACATAAGCACCCCGGG back to topCoding sequence (CDS) from alignment at Scaffold_441:275138..278616- >EsuBft100_18a-0001 ID=EsuBft100_18a-0001|Name=EsuBft100_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=669bp|location=Sequence derived from alignment at Scaffold_441:275138..278616- (Ectocarpus subulatus male Bft15b)
ATGATCCGGCTGAAGAAGAAACAAGATGATGAGAAGGCCGCTGAGGCAGC
AGCGGCAATGGAGATAGACGAGGAAACACCATCGAACGCGGCCGCTCAAC
CAAAAGCGGACGAGGAGAAGGCCGCAGGGAAGCTTCATGTTCTGGGGATT
GGCGGCCGAAGGGCCAAGAGGGGTAGTGCGAAGGCAACCGGAACAAAGAA
GACACCGGGAGAGATTCGTATACAGAAGGACATTGCGGACTTGGATGGCG
GAAGCGTAGCAGAGATCACTTTCCCAAACCCCAACAACCTTACTTCCTTC
AAGGTCAAGGTGCAGCCGGACAGCGGGTTCTGGAAGGGCGCGTCGTACCA
CTTTACCTTTACTATTCCTGCGCTGTACCCTCACGACCCACCCAAAGTGC
TGTGCGAGACCAAAATCTACCACCCCAATATAAACTTGCAGGGGAACGTG
TGCCTCAACATCTTGCGGGAAGACTGGAAGCCGGTGTTGGATATCAACGC
GGTTATCTACGGGCTCATCTACCTGTTCTACGAGCCAAACCCCGAGGACC
CCCTCAACCACGAAGCTGCAGAGCTCTACCGCGACAACATAAGCCAATTC
GAGCGAACAGTGAAGAGGACTCTCGCAGGCTGCGTCATGCACGGGGAGAC
ATTCCAACGACTGATTTGA back to top
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