EsuBft100_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Seed ortholog	2880.D8LRS2
ProteomeId	EsuBft100_18
Protein domains	IPR023313
Protein domains	PTHR24067
Protein domains	SM00212
Protein domains	IPR016135
Protein domains	IPR000608
Owner	apollo_admin@sb-roscoff.fr
Note	nedd8-conjugating enzyme ubc12 os:mus musculus gn:ube2m pe:2 sv:1 [Automatic annotation]
Nb exon	6
Max annot lvl	2759\|Eukaryota
Length	1248
Hectar predicted targeting category	other localisation
Evalue	1.77e-146
EggNOG OGs	KOG0420@1\|root,KOG0420@2759\|Eukaryota
Ec32 ortholog description	Ubiquitin-conjugating enzyme E2
Ec32 ortholog	Ec-08_002220.1
Date last modified	2016-06-14
Date creation	2016-06-14
Preferred name	UBE2M
KEGG rclass	RC00005,RC00726,RC00836,RC00837,RC01726
KEGG ko	ko:K00053,ko:K00573,ko:K00698,ko:K10579
KEGG Reaction	R02335,R03051,R04439,R04440,R05068,R05069,R05071
KEGG Pathway	ko00290,ko00520,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,ko04120,map00290,map00520,map00770,map01100,map01110,map01130,map01210,map01230,map04120
KEGG Module	M00019,M00570
GOs	GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008589,GO:0009719,GO:0009725,GO:0009733,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019788,GO:0023051,GO:0023057,GO:0031974,GO:0031981,GO:0032446,GO:0036211,GO:0042221,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043523,GO:0043525,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045116,GO:0045879,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0061650,GO:0061654,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0140096,GO:1901214,GO:1901216,GO:1901564
EC	1.1.1.86,2.1.1.77,2.4.1.16
Description	NEDD8 transferase activity
COG category	O
CAZy	GT2
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003,ko04121

Cross References

External references for this mRNA


Database	Accession
GO	0031227
GO	0010468
GO	0070735
GO	0034613
GO	0080120
EC	6.3.2
GO	0004175
GO	0006508
GO	0000166
GO	0070062
GO	0004842
GO	0045879
GO	0009733
GO	0006301
GO	0045116
GO	0007179
GO	0005829
GO	0009793
GO	0018169
GO	0016485
GO	0019788
GO	0016567
GO	0043525

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_441:275138..278616-
coding sequence from alignment at Scaffold_441:275138..278616-

spliced messenger RNA

>EsuBft100_18a-0001 ID=EsuBft100_18a-0001|Name=EsuBft100_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1248bp|location=Sequence derived from alignment at Scaffold_441:275138..278616- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGTAAACAGCAGTACAAGCAACTCATCACCGCACGTCTGCACCACCTTTG
GCTCTTGGCACCCCGCTCTATCTCGTCCCTCCGTAGTGGAAGCAGTGCCA
GTGCCAGTACCAGCAGTGGGAAAAAGAGGACGCGAAATGATCCGGCTGAA
GAAGAAACAAGATGATGAGAAGGCCGCTGAGGCAGCAGCGGCAATGGAGA
TAGACGAGGAAACACCATCGAACGCGGCCGCTCAACCAAAAGCGGACGAG
GAGAAGGCCGCAGGGAAGCTTCATGTTCTGGGGATTGGCGGCCGAAGGGC
CAAGAGGGGTAGTGCGAAGGCAACCGGAACAAAGAAGACACCGGGAGAGA
TTCGTATACAGAAGGACATTGCGGACTTGGATGGCGGAAGCGTAGCAGAG
ATCACTTTCCCAAACCCCAACAACCTTACTTCCTTCAAGGTCAAGGTGCA
GCCGGACAGCGGGTTCTGGAAGGGCGCGTCGTACCACTTTACCTTTACTA
TTCCTGCGCTGTACCCTCACGACCCACCCAAAGTGCTGTGCGAGACCAAA
ATCTACCACCCCAATATAAACTTGCAGGGGAACGTGTGCCTCAACATCTT
GCGGGAAGACTGGAAGCCGGTGTTGGATATCAACGCGGTTATCTACGGGC
TCATCTACCTGTTCTACGAGCCAAACCCCGAGGACCCCCTCAACCACGAA
GCTGCAGAGCTCTACCGCGACAACATAAGCCAATTCGAGCGAACAGTGAA
GAGGACTCTCGCAGGCTGCGTCATGCACGGGGAGACATTCCAACGACTGA
TTTGACTTGATGACATCCTGCTCAGTGTATGTTTTTGTTGTTTTTGGACG
CTGAGGGTTGAGCAAAGACGTTTTGGGAAGGCTGGCTGAAGACCCTCGAT
CGACTGGCTCGGTCTCCGAAGCAGCCCTTGATCTTGCTCGGATGGCAACT
GCACAGTTGGAAGAGAATGCTCGAATGTATTATACGCGGCGGCGTTATGC
ACACAAGCATCTCCTGCGTTTTCCAGACATGGTTTTGGACCCGCCGTGCA
TTCAACGAACGTAAATTGTGCGATTTCGATGAAGCCGCCAAGAGCTGGGT
TCGCTCGAAATGCATCCTGGTCGGTAACGACAAAAGCTCTCAGACTTGCG
CAACCACTACCATAGTTGACGTGTTTTCGTATTGTTGAGTTGCTTTCTCC
GCCGTAATGTCCCATCTTCATGCGGGTCTCGCACATAAGCACCCCGGG

protein sequence of EsuBft100_18a-0001

>EsuBft100_18 ID=EsuBft100_18|Name=EsuBft100_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=222bp
MIRLKKKQDDEKAAEAAAAMEIDEETPSNAAAQPKADEEKAAGKLHVLGI
GGRRAKRGSAKATGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSF
KVKVQPDSGFWKGASYHFTFTIPALYPHDPPKVLCETKIYHPNINLQGNV
CLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQF
ERTVKRTLAGCVMHGETFQRLI

mRNA from alignment at Scaffold_441:275138..278616-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft100_18a-0001 ID=EsuBft100_18a-0001|Name=EsuBft100_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3479bp|location=Sequence derived from alignment at Scaffold_441:275138..278616- (Ectocarpus subulatus male Bft15b)
AGTAAACAGCAGTACAAGCAACTCATCACCGCACGTCTGCACCACCTTTG
GCTCTTGGCACCCCGCTCTATCTCGTCCCTCCGTAGTGGAAGCAGTGCCA
GTGCCAGTACCAGCAGTGGGAAAAAGAGGACGCGAAATGATCCGGCTGAA
GAAGAAACAAGATGTAAGAGCGCTTCGAATTTTTCTCGATTGGCATCAAA
ACTGCTCGCGGTCTCTATTGCCTGCTCTGTCGAGCTCGTTCGTTGTGTCC
GATCAAGAGGACGCTGGCAATCCAGTTTCGAGGTCGAAAAAATTATTGCA
ATTCGGGGCCAACATGGGGACCACTGCCGGCTGTGCTGTAACCCTGTTGT
ATTCTGTGAACGAGTCGAAAGTCCTTTGAGTTCAAACAGAACCTGGGATG
GATGTCCCCACAGGTCCCCTGTCCCCCAACAGTAGTCTGCAGCAGCAGCC
ATGAGTTGCGTAGCATCCAGCCGAGAGTGAGAGTGGTCTTGGGGTTTTGC
ATGCTTCCTTCGTCTCGCCTTGTCACAGAAGATTCTGGCGTGCTTTTGTA
ATGGTGTAATGATATCTGCAAAGTCCGAAGGATGCTCTCTCACTTGGCCC
GCGTTCGCGGTACACCGCTGTGGGAAAAGGGACCGCCGGGTTCCATTCAT
ATGCACAGTCTACAATGAGCATCGCAGGCATGGGACGGCCCATGAGAACG
CGGCAGCAGTTGTTAGACCTACAGTCAGCAATCTTGGAGAATGAGCGTGA
TTAAATTGCATGTTGAAATCGGTCCTGACAAAATCCCTTTCATCCAGTTT
CGCCCACAGCTACAGCAAAAGAGTTGGGTTACTTGAGGCCGGTTTGACCG
CTCGTAGCATGATGTGAGCACAGCGTATGTTGGTTGGTAATGGACTACAT
TCCGGTGCGCCGGTAAATTCACTTGGTGACCTCGTAACCTGACTCTTCAT
GTACACTGCGAGTTGGAATTTCTCTGGAGTGAAAAATCGTAATTTGGGCG
AGGAAAGCACGCTTGGACAGCGCATGTTGCTGTGGTCTTGTATGCGGTGA
GTAATCACAACAATGAGCGAAGGATATGCCGCCCTTCTCGCGTCAAATAC
GGAGGGCGAACACCGCAGGGAGAACGGGAAACATCCGAACAAATCCAGCG
TTTACCTTCCTCCTGTGCTACCCCCGACTGGTACGTCGAACATATACTTG
CAAGTGCCAAGAAGAAAGACAAGACGAAACAGAGACACACACCACACCCC
ACTCACACCCGTCTGTGCTCGACAACAACTTGTGTGCCGAACCGCTTGGT
ACCATGATTTCAGGATGAGAAGGCCGCTGAGGCAGCAGCGGCAATGGAGA
TAGACGAGGAAACACCATCGAACGCGGCCGCTCAACCAAAAGCGGACGAG
GAGAAGGCCGCAGGGAAGCTTCATGTTCTGGGGATTGGCGGCCGAAGGGC
CAAGAGGGGTAGTGCGAAGGCAACCGGAACAAAGAAGACACCGGGAGAGA
TTCGTATACAGAAGGGTGAGTGAGCCTGACAACATGGACGCAGCAGCTAT
TCCATGATAAATGCCTGAGCAGCGAGTACGTTGGAGGACATCTCGTCATC
ATTACATGTTCAGTGTGATCAAGGTTCGATACACACTCATTGAACACCCT
GATTTGTGTTGTACCAATCGTGCTGCTCTCGGAAACTGCAGACATTGCGG
ACTTGGATGGCGGAAGCGTAGCAGAGATCACTTTCCCAAACCCCAACAAC
CTTACTTCCTTCAAGGTCAAGGTGAGAATCGATATGTAGGGCTTTGATCA
TCTCAACTTTTGGAGCTGGCGATCCGAACTTCTTGCACCCCGGGCGCGAT
GTAATGCCAGTTAAGTTCATTAATCATCATCGTGGGCTACGTTGCGGAGA
GACCAAGATCATCGATTGAACGTAATTCACGACCTGGACCAGGCTTCTGG
GTTTTCCATTCATGTTCTTTTATAAGCATGCACGGCGGTTCTTTTTTGGT
TTACGTGACACACCTCTGCGTCCTTTACATCCGCACTTACTCCTCCGATC
GTGCGTGTGGAATGTTTTGCCACAGGTGCAGCCGGACAGCGGGTTCTGGA
AGGGCGCGTCGTACCACTTTACCTTTACTATTCCTGCGCTGTACCCTCAC
GACCCACCCAAAGTGAGCAACGCTACGGTTAAGCACACAACCAGGTTGTG
TACACAACAGTAAGCACAATCGTACGGGCCAGTTTTCCTCAAGCCCTTTT
GCTCCGCCCTCGTCGTTGTCCACTTGTTTCGGATTTTTTTCTGAGAGTTT
TCCCCCGTCCGGTCCTTCCTCGCGGTGCAGGTGCTGTGCGAGACCAAAAT
CTACCACCCCAATATAAACTTGCAGGGGAACGTGTGCCTCAACATCTTGC
GGGAAGACTGGAAGCCGGTGAGTCTTCGTGGCTGTGCTGACATGCGGTTT
TCCGAGTTGTTGGAGTGTTTTTTTATCTCCAACCTGTCCTGTACCTGGAT
TCGAGTATCAGCTGTCTCACGAACAACCTGCTGTCGAGTGTGATGGCCTG
AAACGCCCGGCATGAGTATCTCCAAGTCGGTCTGGTGAGTGGGTTGCACA
CGGCAGGCTTGGCGCAATTGCGATATGTTTTCTCCATGAATGCGGCTTTC
GGCAAGCTTGGTCGCGCGAGGGACCAGTACGTGCTGTGCTTTTGCAGCGC
GAGCGGACTACGCCGTACCAGTATCCCCCGAGGCCGAGCGCCACCGAGGA
TGACTACAGCGGCCGCATTTGGTGTGATTAACTTTGATGTTGGTGTAAAC
TGTTGAACTCGATTGGTTCATAAATGCTGGGATTATCCGTCGCTGTGCAG
GTGTTGGATATCAACGCGGTTATCTACGGGCTCATCTACCTGTTCTACGA
GCCAAACCCCGAGGACCCCCTCAACCACGAAGCTGCAGAGCTCTACCGCG
ACAACATAAGCCAATTCGAGCGAACAGTGAAGAGGACTCTCGCAGGCTGC
GTCATGCACGGGGAGACATTCCAACGACTGATTTGACTTGATGACATCCT
GCTCAGTGTATGTTTTTGTTGTTTTTGGACGCTGAGGGTTGAGCAAAGAC
GTTTTGGGAAGGCTGGCTGAAGACCCTCGATCGACTGGCTCGGTCTCCGA
AGCAGCCCTTGATCTTGCTCGGATGGCAACTGCACAGTTGGAAGAGAATG
CTCGAATGTATTATACGCGGCGGCGTTATGCACACAAGCATCTCCTGCGT
TTTCCAGACATGGTTTTGGACCCGCCGTGCATTCAACGAACGTAAATTGT
GCGATTTCGATGAAGCCGCCAAGAGCTGGGTTCGCTCGAAATGCATCCTG
GTCGGTAACGACAAAAGCTCTCAGACTTGCGCAACCACTACCATAGTTGA
CGTGTTTTCGTATTGTTGAGTTGCTTTCTCCGCCGTAATGTCCCATCTTC
ATGCGGGTCTCGCACATAAGCACCCCGGG

Coding sequence (CDS) from alignment at Scaffold_441:275138..278616-

>EsuBft100_18a-0001 ID=EsuBft100_18a-0001|Name=EsuBft100_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=669bp|location=Sequence derived from alignment at Scaffold_441:275138..278616- (Ectocarpus subulatus male Bft15b)
ATGATCCGGCTGAAGAAGAAACAAGATGATGAGAAGGCCGCTGAGGCAGC
AGCGGCAATGGAGATAGACGAGGAAACACCATCGAACGCGGCCGCTCAAC
CAAAAGCGGACGAGGAGAAGGCCGCAGGGAAGCTTCATGTTCTGGGGATT
GGCGGCCGAAGGGCCAAGAGGGGTAGTGCGAAGGCAACCGGAACAAAGAA
GACACCGGGAGAGATTCGTATACAGAAGGACATTGCGGACTTGGATGGCG
GAAGCGTAGCAGAGATCACTTTCCCAAACCCCAACAACCTTACTTCCTTC
AAGGTCAAGGTGCAGCCGGACAGCGGGTTCTGGAAGGGCGCGTCGTACCA
CTTTACCTTTACTATTCCTGCGCTGTACCCTCACGACCCACCCAAAGTGC
TGTGCGAGACCAAAATCTACCACCCCAATATAAACTTGCAGGGGAACGTG
TGCCTCAACATCTTGCGGGAAGACTGGAAGCCGGTGTTGGATATCAACGC
GGTTATCTACGGGCTCATCTACCTGTTCTACGAGCCAAACCCCGAGGACC
CCCTCAACCACGAAGCTGCAGAGCTCTACCGCGACAACATAAGCCAATTC
GAGCGAACAGTGAAGAGGACTCTCGCAGGCTGCGTCATGCACGGGGAGAC
ATTCCAACGACTGATTTGA