EsuBft100_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft100_11a-0001
Unique Name	EsuBft100_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_441	contig	Scaffold_441:204763..205977 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft100_11
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	121
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft100_11a	EsuBft100_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_441 204763..205977 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_11a-0001-exon	EsuBft100_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 204763..205977 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_11a-0001-exon	agat-five_prime_utr-52	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_441 204763..205385 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_11a-0001-cds	EsuBft100_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_441 205386..205742 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_11a-0001-exon	agat-three_prime_utr-88	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_441 205743..205977 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_11a-0001	EsuBft100_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_441 205386..205742 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_441:204763..205977+
coding sequence from alignment at Scaffold_441:204763..205977+

spliced messenger RNA

>EsuBft100_11a-0001 ID=EsuBft100_11a-0001|Name=EsuBft100_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1215bp|location=Sequence derived from alignment at Scaffold_441:204763..205977+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCGTGGTGTACATCGGGACTGTTTTTACAGGGCGATTATTTTTTAAGCC
TGCGGCTCCTCGTACGTGTACGAGGCCGTGTATGTGCGTTCGAGTAATGA
AAGCACAGGAGGATGTGGGGAGTTCAATAACATGCACTAGTTGAAACTAT
TGATTGCTAGACTATCCTCATTTTTGTTTTCATCGACTTGCGATTTTTAG
TCTGGGACAAAAGAAGCATGTAGCGATATCCTAGCTCTGGCTGGGCTTGA
GTTGCCTCCTTGGGTGCCATCCGCTCTTTTTATCATTGGCCTCTTGGGTT
CTGGCGGGAGGGCTTACATGGGTCTTCGTTGCGTTTTAATACGGAGTTTG
CGAACATCGGAATTCGATTTGATTTCGATCTTTTTTATCCACCCGAGCGC
CGAAGACCGCGGGATCTTTTAGGAATTTGATCTTTCGCTTTATCGAATTG
CCCTCAAAGACCGCAGAAAAGATCGAATTCCATCTTGCTTGCATCTATCT
TTTTGGGAACAGTTTCTGGTTGGCCTGTACTTCCCGAGATACTCCCGACG
TTGTCCGGACACATGCCGCACCAGCCCGTGAGGCTAGCTATGCACCCACA
CCTCGGCCGTGATACACACTACCATGGCGAGCCAGCTACAGTACCGCAAG
ACAGTTAGACAGTCGTCACTGCACGCCAGACCCGGTGCAATGCATGCTGC
CGATATGGTGCATTTGCGCCCTTTGAACCGCAGCATACCGTTCTACATGC
TCTTCTTGAGTGACACACCAAGTCGGCGTGACGAGGATGACGGCGATGCT
GCGAGCGGCATAGATCTTAGGAGTGCTGCACAGGTGGAGGCGGAGGTGAC
GGGGTTAGGGATGCTTCAAGCGGCGTGGGAGCGTGAAGAGCTGCTGTGCG
TGCGTCCTGTGGACCGTGCTCCGGTGATACGTCTGTCGCGGACGATCGAC
TCCGTTGATGACTGCGACGCGTATCACTAAACCGCGGGGCAGCGGTAGTA
GGAGGAGGAGGTCCTTGGCCTTCGTGCTGTGTGTTCACCGAAACTCTGGC
GAGGGGAGCGGCCCTCGCCGGAGGACTCGTGTTGCCATGAACACCCGGCA
ACTGAACCGGGCCAGCCTTCTCATGAGTACGTTGACCTCCATCGTTCTCC
ATGATTGTTTAACAGCGGTTGTGAGTGTAATGTGGTGGTAGCCTTGCGGT
GGGGGTGGAGGCGGA

protein sequence of EsuBft100_11a-0001

>EsuBft100_11 ID=EsuBft100_11|Name=EsuBft100_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=118bp
MASQLQYRKTVRQSSLHARPGAMHAADMVHLRPLNRSIPFYMLFLSDTPS
RRDEDDGDAASGIDLRSAAQVEAEVTGLGMLQAAWEREELLCVRPVDRAP
VIRLSRTIDSVDDCDAYH

mRNA from alignment at Scaffold_441:204763..205977+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft100_11a-0001 ID=EsuBft100_11a-0001|Name=EsuBft100_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1215bp|location=Sequence derived from alignment at Scaffold_441:204763..205977+ (Ectocarpus subulatus male Bft15b)
GTCGTGGTGTACATCGGGACTGTTTTTACAGGGCGATTATTTTTTAAGCC
TGCGGCTCCTCGTACGTGTACGAGGCCGTGTATGTGCGTTCGAGTAATGA
AAGCACAGGAGGATGTGGGGAGTTCAATAACATGCACTAGTTGAAACTAT
TGATTGCTAGACTATCCTCATTTTTGTTTTCATCGACTTGCGATTTTTAG
TCTGGGACAAAAGAAGCATGTAGCGATATCCTAGCTCTGGCTGGGCTTGA
GTTGCCTCCTTGGGTGCCATCCGCTCTTTTTATCATTGGCCTCTTGGGTT
CTGGCGGGAGGGCTTACATGGGTCTTCGTTGCGTTTTAATACGGAGTTTG
CGAACATCGGAATTCGATTTGATTTCGATCTTTTTTATCCACCCGAGCGC
CGAAGACCGCGGGATCTTTTAGGAATTTGATCTTTCGCTTTATCGAATTG
CCCTCAAAGACCGCAGAAAAGATCGAATTCCATCTTGCTTGCATCTATCT
TTTTGGGAACAGTTTCTGGTTGGCCTGTACTTCCCGAGATACTCCCGACG
TTGTCCGGACACATGCCGCACCAGCCCGTGAGGCTAGCTATGCACCCACA
CCTCGGCCGTGATACACACTACCATGGCGAGCCAGCTACAGTACCGCAAG
ACAGTTAGACAGTCGTCACTGCACGCCAGACCCGGTGCAATGCATGCTGC
CGATATGGTGCATTTGCGCCCTTTGAACCGCAGCATACCGTTCTACATGC
TCTTCTTGAGTGACACACCAAGTCGGCGTGACGAGGATGACGGCGATGCT
GCGAGCGGCATAGATCTTAGGAGTGCTGCACAGGTGGAGGCGGAGGTGAC
GGGGTTAGGGATGCTTCAAGCGGCGTGGGAGCGTGAAGAGCTGCTGTGCG
TGCGTCCTGTGGACCGTGCTCCGGTGATACGTCTGTCGCGGACGATCGAC
TCCGTTGATGACTGCGACGCGTATCACTAAACCGCGGGGCAGCGGTAGTA
GGAGGAGGAGGTCCTTGGCCTTCGTGCTGTGTGTTCACCGAAACTCTGGC
GAGGGGAGCGGCCCTCGCCGGAGGACTCGTGTTGCCATGAACACCCGGCA
ACTGAACCGGGCCAGCCTTCTCATGAGTACGTTGACCTCCATCGTTCTCC
ATGATTGTTTAACAGCGGTTGTGAGTGTAATGTGGTGGTAGCCTTGCGGT
GGGGGTGGAGGCGGA

Coding sequence (CDS) from alignment at Scaffold_441:204763..205977+

>EsuBft100_11a-0001 ID=EsuBft100_11a-0001|Name=EsuBft100_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=357bp|location=Sequence derived from alignment at Scaffold_441:204763..205977+ (Ectocarpus subulatus male Bft15b)
ATGGCGAGCCAGCTACAGTACCGCAAGACAGTTAGACAGTCGTCACTGCA
CGCCAGACCCGGTGCAATGCATGCTGCCGATATGGTGCATTTGCGCCCTT
TGAACCGCAGCATACCGTTCTACATGCTCTTCTTGAGTGACACACCAAGT
CGGCGTGACGAGGATGACGGCGATGCTGCGAGCGGCATAGATCTTAGGAG
TGCTGCACAGGTGGAGGCGGAGGTGACGGGGTTAGGGATGCTTCAAGCGG
CGTGGGAGCGTGAAGAGCTGCTGTGCGTGCGTCCTGTGGACCGTGCTCCG
GTGATACGTCTGTCGCGGACGATCGACTCCGTTGATGACTGCGACGCGTA
TCACTAA