Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LC56 |
| ProteomeId | EsuBft1227_5 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 67 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.45e-05 |
| EggNOG OGs | 2E79G@1|root,2SDWE@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Metallo-peptidase family M12B Reprolysin-like |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1227_5a-0001 ID=EsuBft1227_5a-0001|Name=EsuBft1227_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=678bp|location=Sequence derived from alignment at Scaffold_420:184603..186508+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTGGAATACCCTTCGAATATTCCCTCTCGCCTCTTCCCCTGCCCGCG
ATTTGATCAGACCTTCTCTCTAAAGGTATCAAAGCACACCGTCGAAGGAA
ACACGTCCACGATGAAGTCCGTCCCGTGTGGGTTGTCCGGCGTGGAGGTT
TGTCTCGTCGAGGTCGCATTTGATTTTCTTCCTGGCAAAGAGCCTCTCGG
GGTCGGAGTCAACAGCACCGGCCAGTCCACGGCCGTGAGACGAAGGCTGG
GCAACGGTATGTTTGGGGGGGGCAGCCGTGCCAAACACCAACAGCAACAG
GCGTTCGGATGGGGCTGGTTTGGCGGCGGGGGCGGTAGTGGTCGACGCCG
CAAGCTGCAGTCCAACCCCGTGGAGGTTCTGGTGCTCTACACCAACATGT
CGTTGGTCTTGATGGGCGTGAGCGACGTCCAGATGGAAACCATGGTCTCC
GCCGCCATCTCGACCGTGAACATGGGCTTCGAGAATTCCCACATCGGGAT
TGAGACAACCACAGTCTACCAGGGCAGGCTGCCGTACTCCCAAGATTACA
CGGATGATTCCAGCACCAAACTCAGCGACTTGCGAGAGAACGAGGAGGTT
AACGCGCTCCGCGATGAGTACGGGGCAGACATCGTTCTTCTTGTCGACTA
CCTACTGGACGCTTGCGGAATCGCGTGA back to topprotein sequence of EsuBft1227_5a-0001 >EsuBft1227_5 ID=EsuBft1227_5|Name=EsuBft1227_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=225bp
MVEYPSNIPSRLFPCPRFDQTFSLKVSKHTVEGNTSTMKSVPCGLSGVEV
CLVEVAFDFLPGKEPLGVGVNSTGQSTAVRRRLGNGMFGGGSRAKHQQQQ
AFGWGWFGGGGGSGRRRKLQSNPVEVLVLYTNMSLVLMGVSDVQMETMVS
AAISTVNMGFENSHIGIETTTVYQGRLPYSQDYTDDSSTKLSDLRENEEV
NALRDEYGADIVLLVDYLLDACGIA back to topmRNA from alignment at Scaffold_420:184603..186508+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1227_5a-0001 ID=EsuBft1227_5a-0001|Name=EsuBft1227_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1906bp|location=Sequence derived from alignment at Scaffold_420:184603..186508+ (Ectocarpus subulatus male Bft15b)
ATGGTGGAATACCCTTCGAATATTCCCTCTCGCCTCTTCCCCTGCCCGCG
ATTTGATCAGACCTTCTCTCTAAAGGTATCAAAGCACACCGTCGAAGGAA
ACACGTCCACGATGAAGTCCGTCCCGTGTGGGTTGTCCGGCGTGGAGGTT
TGTCTCGTCGAGGTGCGTTGTCGCTACCATTGTTGCTTGATGCTGGTGTG
AGTCATTGTGCTGTTGCGTTAATACAACTAGCGGCATCCTTCTAGTGGTC
CTTAGCATGGGGCGTTCTCAGCCACGGCCAACCAGTATCTATAAGGCACA
TCAACGATCGTTCAGGCGGAAAGATTCATGCTGTGGCGTTGGACACGTCA
AGCAATAGTATTTGGGGAAAGGCGTAGCAAAATGTACCACGTATGCTTCT
TTTCGGCGCCGAATTCTCTTGGAATGCCTGTGATAGGCAATGATCAATCG
TGTACCGGACCTGCTTCCATCCTCCCGCGCAACTAGAGAAAGGTTTGGAA
CGCAATGCAGAAGAGTGTGCTTGATTCTTCGTGCTTCTATGTGTTTCAGG
TCGCATTTGATTTTCTTCCTGGCAAAGAGCCTCTCGGGGTCGGAGTCAAC
AGCACCGGCCAGTCCACGGCCGTGAGACGAAGGCTGGGCAACGGTATGTT
TGGGGGGGGCAGCCGTGCCAAACACCAACAGCAACAGGCGTTCGGATGGG
GCTGGTTTGGCGGCGGGGGCGGTAGTGGTCGACGCCGCAAGCTGCAGTCC
AACCCCGTGGAGGTGAGCAAATGCGTGCCGGGCATGGTCTGCCAATATGT
TCTTACTTTTTCGTCTGCGTTTCACCGGACATAGCAGCAGGGTGCTTTTG
TACATGACCCACCTCGACCAAACGACGTCATGGCAAAGTCCACATGTTCA
GCGCTTAGGACACTCTCACCAGATATTTCATATCATTTGCAATTTCAGCG
AACTACCCTTCTGGAAATCGTTTCACAATCGTCGGAGTCGTCGGGTAAAC
TTTTAGACAGGCAATACCAAGGTGAGGACAGAAAACAACGAAGAGTATGA
GGTAATATAAACGACACCTTACCCCTGCGGAAGGAGGGCCGTCGGGACTA
CGGGGATCCCATAGCGGGGGACAACTGTGCCCATCAATCCATTGCCCCCC
CCTCTGCTTTAACCCACCTCCTTGTAGAAACCAGTTTGAACAAAATAGGC
GTCAGCTTGCTCCAGTATGATACGCCAGTTCGCTTCCTCCTTCCAACGTT
TGCCATACGAGAACACAGATTCAGGTTCTGGTGCTCTACACCAACATGTC
GTTGGTCTTGATGGGCGTGAGCGACGTCCAGATGGAAACCATGGTCTCCG
CCGCCATCTCGACCGTGAACATGGGCTTCGAGAATTCCCACATCGGGATT
GAGACAACCACAGTCTACCAGGGCAGGGTGAGTTGCGCGATGTCGGTCTC
AAACAAAAGAGCATCATTACGTCCTCACGTGCCCACCTGCGACGACGAGA
TGCGCTTTCGAGTCGCAGATGAAAATGTTGCATTGATTCCACAAGAGGAT
ACCATAAGAAATCAGAACAGTAGCAGCAGCAGCAGCAGCAGCAGCGGCAG
ACAAAGAGAGTTTTGGCTATCAGAGTATGTATGCCGGCTGGTCGCTGAAA
ACATGAAGTGGTTGAGTGGGTATGAACAAGCGCGTGGGTTTCGGCTGTGC
CCCTTATATCGAGGTCTTCGTCTGATTCTGTTGCTCGTCTCGCTTATTCG
GCGCAGCTGCCGTACTCCCAAGATTACACGGATGATTCCAGCACCAAACT
CAGCGACTTGCGAGAGAACGAGGAGGTTAACGCGCTCCGCGATGAGTACG
GGGCAGACATCGTTCTTCTTGTCGACTACCTACTGGACGCTTGCGGAATC
GCGTGA back to topCoding sequence (CDS) from alignment at Scaffold_420:184603..186508+ >EsuBft1227_5a-0001 ID=EsuBft1227_5a-0001|Name=EsuBft1227_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=678bp|location=Sequence derived from alignment at Scaffold_420:184603..186508+ (Ectocarpus subulatus male Bft15b)
ATGGTGGAATACCCTTCGAATATTCCCTCTCGCCTCTTCCCCTGCCCGCG
ATTTGATCAGACCTTCTCTCTAAAGGTATCAAAGCACACCGTCGAAGGAA
ACACGTCCACGATGAAGTCCGTCCCGTGTGGGTTGTCCGGCGTGGAGGTT
TGTCTCGTCGAGGTCGCATTTGATTTTCTTCCTGGCAAAGAGCCTCTCGG
GGTCGGAGTCAACAGCACCGGCCAGTCCACGGCCGTGAGACGAAGGCTGG
GCAACGGTATGTTTGGGGGGGGCAGCCGTGCCAAACACCAACAGCAACAG
GCGTTCGGATGGGGCTGGTTTGGCGGCGGGGGCGGTAGTGGTCGACGCCG
CAAGCTGCAGTCCAACCCCGTGGAGGTTCTGGTGCTCTACACCAACATGT
CGTTGGTCTTGATGGGCGTGAGCGACGTCCAGATGGAAACCATGGTCTCC
GCCGCCATCTCGACCGTGAACATGGGCTTCGAGAATTCCCACATCGGGAT
TGAGACAACCACAGTCTACCAGGGCAGGCTGCCGTACTCCCAAGATTACA
CGGATGATTCCAGCACCAAACTCAGCGACTTGCGAGAGAACGAGGAGGTT
AACGCGCTCCGCGATGAGTACGGGGCAGACATCGTTCTTCTTGTCGACTA
CCTACTGGACGCTTGCGGAATCGCGTGA back to top
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