EsuBft1227_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1227_5a-0001
Unique NameEsuBft1227_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_420contigScaffold_420:184603..186508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LC56
ProteomeIdEsuBft1227_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length67
Hectar predicted targeting categoryother localisation
Evalue1.45e-05
EggNOG OGs2E79G@1|root,2SDWE@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionMetallo-peptidase family M12B Reprolysin-like
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1227_5aEsuBft1227_5aEctocarpus subulatus male Bft15bgeneScaffold_420 184603..186508 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1227_5a-0001-exonagat-exon-83432Ectocarpus subulatus male Bft15bexonScaffold_420 184603..184764 +
EsuBft1227_5a-0001-exonagat-exon-83434Ectocarpus subulatus male Bft15bexonScaffold_420 185152..185364 +
EsuBft1227_5a-0001-exonEsuBft1227_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_420 185877..186029 +
EsuBft1227_5a-0001-exonagat-exon-83433Ectocarpus subulatus male Bft15bexonScaffold_420 186359..186508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1227_5a-0001-cdsEsuBft1227_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_420 184603..184764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1227_5a-0001EsuBft1227_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_420 184603..186508 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1227_5a-0001 ID=EsuBft1227_5a-0001|Name=EsuBft1227_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=678bp|location=Sequence derived from alignment at Scaffold_420:184603..186508+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGAATACCCTTCGAATATTCCCTCTCGCCTCTTCCCCTGCCCGCG
ATTTGATCAGACCTTCTCTCTAAAGGTATCAAAGCACACCGTCGAAGGAA
ACACGTCCACGATGAAGTCCGTCCCGTGTGGGTTGTCCGGCGTGGAGGTT
TGTCTCGTCGAGGTCGCATTTGATTTTCTTCCTGGCAAAGAGCCTCTCGG
GGTCGGAGTCAACAGCACCGGCCAGTCCACGGCCGTGAGACGAAGGCTGG
GCAACGGTATGTTTGGGGGGGGCAGCCGTGCCAAACACCAACAGCAACAG
GCGTTCGGATGGGGCTGGTTTGGCGGCGGGGGCGGTAGTGGTCGACGCCG
CAAGCTGCAGTCCAACCCCGTGGAGGTTCTGGTGCTCTACACCAACATGT
CGTTGGTCTTGATGGGCGTGAGCGACGTCCAGATGGAAACCATGGTCTCC
GCCGCCATCTCGACCGTGAACATGGGCTTCGAGAATTCCCACATCGGGAT
TGAGACAACCACAGTCTACCAGGGCAGGCTGCCGTACTCCCAAGATTACA
CGGATGATTCCAGCACCAAACTCAGCGACTTGCGAGAGAACGAGGAGGTT
AACGCGCTCCGCGATGAGTACGGGGCAGACATCGTTCTTCTTGTCGACTA
CCTACTGGACGCTTGCGGAATCGCGTGA
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protein sequence of EsuBft1227_5a-0001

>EsuBft1227_5 ID=EsuBft1227_5|Name=EsuBft1227_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=225bp
MVEYPSNIPSRLFPCPRFDQTFSLKVSKHTVEGNTSTMKSVPCGLSGVEV
CLVEVAFDFLPGKEPLGVGVNSTGQSTAVRRRLGNGMFGGGSRAKHQQQQ
AFGWGWFGGGGGSGRRRKLQSNPVEVLVLYTNMSLVLMGVSDVQMETMVS
AAISTVNMGFENSHIGIETTTVYQGRLPYSQDYTDDSSTKLSDLRENEEV
NALRDEYGADIVLLVDYLLDACGIA
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mRNA from alignment at Scaffold_420:184603..186508+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1227_5a-0001 ID=EsuBft1227_5a-0001|Name=EsuBft1227_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1906bp|location=Sequence derived from alignment at Scaffold_420:184603..186508+ (Ectocarpus subulatus male Bft15b)
ATGGTGGAATACCCTTCGAATATTCCCTCTCGCCTCTTCCCCTGCCCGCG
ATTTGATCAGACCTTCTCTCTAAAGGTATCAAAGCACACCGTCGAAGGAA
ACACGTCCACGATGAAGTCCGTCCCGTGTGGGTTGTCCGGCGTGGAGGTT
TGTCTCGTCGAGGTGCGTTGTCGCTACCATTGTTGCTTGATGCTGGTGTG
AGTCATTGTGCTGTTGCGTTAATACAACTAGCGGCATCCTTCTAGTGGTC
CTTAGCATGGGGCGTTCTCAGCCACGGCCAACCAGTATCTATAAGGCACA
TCAACGATCGTTCAGGCGGAAAGATTCATGCTGTGGCGTTGGACACGTCA
AGCAATAGTATTTGGGGAAAGGCGTAGCAAAATGTACCACGTATGCTTCT
TTTCGGCGCCGAATTCTCTTGGAATGCCTGTGATAGGCAATGATCAATCG
TGTACCGGACCTGCTTCCATCCTCCCGCGCAACTAGAGAAAGGTTTGGAA
CGCAATGCAGAAGAGTGTGCTTGATTCTTCGTGCTTCTATGTGTTTCAGG
TCGCATTTGATTTTCTTCCTGGCAAAGAGCCTCTCGGGGTCGGAGTCAAC
AGCACCGGCCAGTCCACGGCCGTGAGACGAAGGCTGGGCAACGGTATGTT
TGGGGGGGGCAGCCGTGCCAAACACCAACAGCAACAGGCGTTCGGATGGG
GCTGGTTTGGCGGCGGGGGCGGTAGTGGTCGACGCCGCAAGCTGCAGTCC
AACCCCGTGGAGGTGAGCAAATGCGTGCCGGGCATGGTCTGCCAATATGT
TCTTACTTTTTCGTCTGCGTTTCACCGGACATAGCAGCAGGGTGCTTTTG
TACATGACCCACCTCGACCAAACGACGTCATGGCAAAGTCCACATGTTCA
GCGCTTAGGACACTCTCACCAGATATTTCATATCATTTGCAATTTCAGCG
AACTACCCTTCTGGAAATCGTTTCACAATCGTCGGAGTCGTCGGGTAAAC
TTTTAGACAGGCAATACCAAGGTGAGGACAGAAAACAACGAAGAGTATGA
GGTAATATAAACGACACCTTACCCCTGCGGAAGGAGGGCCGTCGGGACTA
CGGGGATCCCATAGCGGGGGACAACTGTGCCCATCAATCCATTGCCCCCC
CCTCTGCTTTAACCCACCTCCTTGTAGAAACCAGTTTGAACAAAATAGGC
GTCAGCTTGCTCCAGTATGATACGCCAGTTCGCTTCCTCCTTCCAACGTT
TGCCATACGAGAACACAGATTCAGGTTCTGGTGCTCTACACCAACATGTC
GTTGGTCTTGATGGGCGTGAGCGACGTCCAGATGGAAACCATGGTCTCCG
CCGCCATCTCGACCGTGAACATGGGCTTCGAGAATTCCCACATCGGGATT
GAGACAACCACAGTCTACCAGGGCAGGGTGAGTTGCGCGATGTCGGTCTC
AAACAAAAGAGCATCATTACGTCCTCACGTGCCCACCTGCGACGACGAGA
TGCGCTTTCGAGTCGCAGATGAAAATGTTGCATTGATTCCACAAGAGGAT
ACCATAAGAAATCAGAACAGTAGCAGCAGCAGCAGCAGCAGCAGCGGCAG
ACAAAGAGAGTTTTGGCTATCAGAGTATGTATGCCGGCTGGTCGCTGAAA
ACATGAAGTGGTTGAGTGGGTATGAACAAGCGCGTGGGTTTCGGCTGTGC
CCCTTATATCGAGGTCTTCGTCTGATTCTGTTGCTCGTCTCGCTTATTCG
GCGCAGCTGCCGTACTCCCAAGATTACACGGATGATTCCAGCACCAAACT
CAGCGACTTGCGAGAGAACGAGGAGGTTAACGCGCTCCGCGATGAGTACG
GGGCAGACATCGTTCTTCTTGTCGACTACCTACTGGACGCTTGCGGAATC
GCGTGA
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Coding sequence (CDS) from alignment at Scaffold_420:184603..186508+

>EsuBft1227_5a-0001 ID=EsuBft1227_5a-0001|Name=EsuBft1227_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=678bp|location=Sequence derived from alignment at Scaffold_420:184603..186508+ (Ectocarpus subulatus male Bft15b)
ATGGTGGAATACCCTTCGAATATTCCCTCTCGCCTCTTCCCCTGCCCGCG
ATTTGATCAGACCTTCTCTCTAAAGGTATCAAAGCACACCGTCGAAGGAA
ACACGTCCACGATGAAGTCCGTCCCGTGTGGGTTGTCCGGCGTGGAGGTT
TGTCTCGTCGAGGTCGCATTTGATTTTCTTCCTGGCAAAGAGCCTCTCGG
GGTCGGAGTCAACAGCACCGGCCAGTCCACGGCCGTGAGACGAAGGCTGG
GCAACGGTATGTTTGGGGGGGGCAGCCGTGCCAAACACCAACAGCAACAG
GCGTTCGGATGGGGCTGGTTTGGCGGCGGGGGCGGTAGTGGTCGACGCCG
CAAGCTGCAGTCCAACCCCGTGGAGGTTCTGGTGCTCTACACCAACATGT
CGTTGGTCTTGATGGGCGTGAGCGACGTCCAGATGGAAACCATGGTCTCC
GCCGCCATCTCGACCGTGAACATGGGCTTCGAGAATTCCCACATCGGGAT
TGAGACAACCACAGTCTACCAGGGCAGGCTGCCGTACTCCCAAGATTACA
CGGATGATTCCAGCACCAAACTCAGCGACTTGCGAGAGAACGAGGAGGTT
AACGCGCTCCGCGATGAGTACGGGGCAGACATCGTTCTTCTTGTCGACTA
CCTACTGGACGCTTGCGGAATCGCGTGA
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