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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 6669.EFX70308 |
| ProteomeId | EsuBft1016_5 |
| Protein domains | IPR013684 |
| Protein domains | IPR027417 |
| Protein domains | PTHR24073 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | rab-like protein 3 os:gallus gallus gn:rabl3 pe:2 sv:1 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 33208|Metazoa |
| Length | 1598 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.01e-15 |
| EggNOG OGs | 2CN0E@1|root,2QT3S@2759|Eukaryota,39WC4@33154|Opisthokonta,3BGWV@33208|Metazoa,3D1PY@33213|Bilateria,41TSW@6656|Arthropoda |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | RABL3 |
| KEGG ko | ko:K07933 |
| GOs | GO:0003674,GO:0003824,GO:0003924,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111 |
| Description | GTP binding. It is involved in the biological process described with small GTPase mediated signal transduction |
| COG category | U |
| BRITE | ko00000,ko04031 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 1901360 |
| GO | 0032401 |
| GO | 0010008 |
| GO | 0031344 |
| GO | 0044087 |
| GO | 0030154 |
| GO | 0045056 |
| GO | 0006519 |
| GO | 0055037 |
| GO | 0046394 |
| GO | 0051960 |
| GO | 0031988 |
| GO | 0005525 |
| GO | 0007268 |
| GO | 0003824 |
| GO | 0098590 |
| GO | 0007264 |
| GO | 0036477 |
| GO | 0065008 |
| GO | 0042995 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1016_5a-0001 ID=EsuBft1016_5a-0001|Name=EsuBft1016_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1598bp|location=Sequence derived from alignment at Scaffold_389:625243..628801- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGCTGCGCGCACTCTGCACTGTTCACACACCCCAGCCGTGCATTGGATCA
TCTGCGTTTCCTATCTCTCTCTCTCTCTTTCGCTTTTTCTTTCTCTCGAG
AGACACGTCCATCCTTACCACAACCTCTTGTGAAGGAAGGGACAGAGAGG
GAGAGCGAGAGAGAGACATAGAGGCGGCATAGGTGCGCAGAAGAAGCGGA
GCTTCGATGGACGCATCCGCGGGCAAGAACTTCGACCCTCATCACGCCAG
AATCCTGGTCGTCGGGCCCATGGCAGCGGGCAAGACAACTCTGGTGCATT
CCTTCTGCCACGGCGGCGTTGGGAATGGCGTGCCAGGAAACAGGCTACCC
ACCGTCGGGTGCAGTGTCGACGTCAAGCTGCTCGCAGGAGGGCACCCGAA
CCGGTCCATCGAGTTCTGGGACGTGGGCGGAAGACCCGACGCCGCCCTTG
CTCGAGGCATGTTCTTTGAAGGATGCGAAGCGGCAGGGGTGCTCCTGGTA
TATGATGTGTCTACCCCGAGGTCGCTGCGAGACCTACGCGTGTGGGTCGC
CGAGCTCGACTCCGCCGGGATCTCAGTTCTCGGCGAGAGCGACAACAACG
GCCGCTCGAGTGCCACCGCCCCGTACGCGAGGAGCTTGAGGAGCACCGAA
CATCCACCGTATTTCTTCTCGGAAGGACTGACCGCCGACCTGGAAGGAGG
AGGGTCTGGAACAGCAGCGGTAGGCGGCGGTAGGATCCCTCTCATGGTGG
TCGGGGCCAAGGCGGATACCGGAGAAGGCGTGCGGCGCGAGGGGGGGGCG
CTAGCGTCGGAGCTCGGCGCCGGGCACGTGGCTGTGAAAGTGCGCTTCGA
AACTGTCGAACGAGGAGGAGGCGTTATTCGGCAGGTTCTTTAGAGAAGTC
TTTCGACATCACTCCGGCCTGCAGGCGCCGCCGCTGGGCGAAGGAATGTC
CGAGCGGTGGGAAGAGACGTACGAAAGCGAAGACTCGTATTTCCCTTCGA
GTGAGACGACGACGACGGCGGCGGCGGATGGCGGCGGCAGATCAACCCTT
CATACATGCCATCGTCCTTGGGGAAGCAGCCGGTGGGGGAGCGACCAACC
ACCAGGAAGCAATCCACGACAAGAGGCTGGCATTGGTTGTACAAGGAAAG
GACACCCTGGCACTCGGGGCGACGAAGGTCGGGTTGAAGGGGAGGCGCGC
GGATGGGCTGGAGGTGGAGCAAGCACCGTAGGTGGTGGGCTGGTGTGGCC
GGCGCACCGCGGCGCATTGCCGTCTGCCGCGGCCGGACGGCGTCCGGCTC
GAGACAAACAGTCCTGAAATAGGGATCGGGGTCGACAATGGGTTGGTCTT
GTGTGTGTTTTGGAGTATTTACTCGTAGCACCAAGCACGGGAAGGTGTGG
TTTTGTCTCTTGATGCGCCCCCTATGGCCAAAGGTGCCCCGTGTATCGGT
CTTGAAGTAAATGGGTATGTGGCACCATGGCGCACTCCGATGCTTCGCCG
GCTGGAGTATCTGGTCAAAGCGAGTTTCAATGCGAACGATGAGCGTGTGA
GTGTTGTCTTGCGGCTTGCGTTCATGGGCGTCAGCGATCGTAACTGTT back to topprotein sequence of EsuBft1016_5a-0001 >EsuBft1016_5 ID=EsuBft1016_5|Name=EsuBft1016_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=228bp
MDASAGKNFDPHHARILVVGPMAAGKTTLVHSFCHGGVGNGVPGNRLPTV
GCSVDVKLLAGGHPNRSIEFWDVGGRPDAALARGMFFEGCEAAGVLLVYD
VSTPRSLRDLRVWVAELDSAGISVLGESDNNGRSSATAPYARSLRSTEHP
PYFFSEGLTADLEGGGSGTAAVGGGRIPLMVVGAKADTGEGVRREGGALA
SELGAGHVAVKVRFETVERGGGVIRQVL back to topmRNA from alignment at Scaffold_389:625243..628801- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1016_5a-0001 ID=EsuBft1016_5a-0001|Name=EsuBft1016_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3559bp|location=Sequence derived from alignment at Scaffold_389:625243..628801- (Ectocarpus subulatus male Bft15b)
TGCTGCGCGCACTCTGCACTGTTCACACACCCCAGCCGTGCATTGGATCA
TCTGCGTTTCCTATCTCTCTCTCTCTCTTTCGCTTTTTCTTTCTCTCGAG
GTAGGTGACCGCGAGTGTGCTCTGTGCTGATTGCCGCGTGAAATCTCGAC
AGTCGTTGTCGCCAAGAAAATTGATCGTGTGTATAGCACTGCTGCACTGC
TACCGTGCCATTGTTGTCCAGATATGTTCCAGAGACACAGCATGCTCGGT
TCGCATCTAGCGCCTGCTGTCGCCACCCGCCGCATTCCTGGTGCTTATCA
GCAGAGACACGTCCATCCTTACCACAACCTCTTGTGAAGGAAGGGACAGA
GAGGGAGAGCGAGAGAGAGACATAGAGGCGGCATAGGTGCGCAGAAGAAG
CGGAGCTTCGATGGACGCATCCGCGGGCAAGAACTTCGACCCTCATCACG
CCAGAATCCTGGTCGTCGGGCCCATGGCAGCGGGCAAGACAACTCTGGTG
CATTCCTTCTGCCACGGCGGCGTTGGGAATGGCGTGCCAGGAAACAGGCT
ACCCACCGTCGGGTGCAGTGTCGACGTCAAGGTGCAACTCGAGACAAAAG
GAACTACTTCTATTTGTTACTGCTGTAGCTGGTGTTTACGGGGCTACAGT
AGTCTACCAGATAAACGTGTCTTTAGTTTTCGAAGATGTCGTAGATCCAT
TCCGACGACCGTATCGTCCAGCATATCAGTGATCTGCGTGATGACTAGGA
CGGGTGCCAGGTGTCGTTCCTGATCGCAAATCGGTCAACACTGCCGTGTT
ACATTTGCATTTGGTCGTCAGGAGCAACTTCCTTGCGCAAGCGACATCTG
CACTTTTCCACGGCAGCAAGCAGTCCCTGTGGAACCTGCGTCGCGAGCGT
TTGTTCTCTGCTGGGCCCTTCTTGCTTGTTTCCCAACCTCAAAGCGTTGG
ATAACACACCACACAGCTTCCTCTGAAAGTATGACTAAAGGTATCGGTGA
TGCCAGCTGGTACTCATTACAAAACACTTCTTGCCCACATGCAGCTGCTC
GCAGGAGGGCACCCGAACCGGTCCATCGAGTTCTGGGACGTGGGCGGAAG
ACCCGACGCCGCCCTTGCTCGAGGCATGTTCTTTGAAGGATGCGAAGCGG
CAGGGGTGCTCCTGGTATATGATGTGTCTACCCCGAGGTGAAGTGTAACG
CCTTCGCCGTGTCACCCGGACGATGGTTTAGGGTCGTGCGAGATGCTGTC
ACGAGAAATGCCCGCCGTCGATTTCTATCTCTTGGCCACCTCCGATTTTA
TCGCCCCATGAGAACCATTTGTCAGACAGCGCGTCTGCCGCGGTCACGAT
GCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNN
NNNNNNNCGATGCCCCCCCCCCCCCACGTGCCCCGACCCAACGCCCTGTT
ATGTTTTCTGCGCACGTGTGGCGACCACAACCGCTGCTACCAACAACAAC
AACAACAACAACAACAACAACCACAACCAAAAAAGGTCGCTGCGAGACCT
ACGCGTGTGGGTCGCCGAGCTCGACTCCGCCGGGATCTCAGTTCTCGGCG
AGAGCGACAACAACGGCCGCTCGAGTGCCACCGCCCCGTACGCGAGGAGC
TTGAGGAGCACCGAACATCCACCGTATTTCTTCTCGGAAGGACTGACCGC
CGACCTGGAAGGAGGAGGGTCTGGAACAGCAGCGGTAGGCGGCGGTAGGA
TCCCTCTCATGGTGGTCGGGGCCAAGGCGGATACCGGAGAAGGCGTGCGG
CGCGAGGGGGGGGCGCTAGCGTCGGAGCTCGGCGCCGGGCACGTGGCTGT
GGTGAGAAACCGAGCCTCGGGCCAGCCGGTGGATAGTGATAGGAGGTGGG
GGCCGGGGGCGTAGTCATGTTTTGCATGACTTAAATAATAGACCATCCAT
TGACCACACATCCTAGAAAGGAAGGGAGGTTGGACTGCTGCCTAAGGCCT
GTTTACCTGCTAAGGCCCGTACTGGGTTGATCTTTTTTCACGCGAGTCGC
CGTCGATGGCCTCCAGCCTGATCTTGATCGTGAATCCCCGTGGAATGTCC
GTAGGTGCGATGTGCCTTTGTCACTACTGTTGTATTCTCGGGGGAAACTT
TTCACTCTGCGTTGTGTGCGGTGCAGCCTCCTCCAGATGATGGAGGCCTC
CGTGGCACTCCGAAAAATATCTAGACTCGACCTCGCCCCCTTTGACACGC
GTGTCTTGTTTTATTATTCGTCGTCGATCTTGTCCTGCGCGTTCCCTGCT
TTGTGACATCGTGAACCTCTCGCGGTACACATGTACCCACACCCCACCGG
TGAAAGAAAGTGCGCTTCGAAACTGTCGAACGAGGAGGAGGCGTTATTCG
GCAGGTTCTTTAGAGAAGTCTTTCGACATCACTCCGGCCTGCAGGCGCCG
CCGCTGGGCGAAGGTGAGATCCTTTCTGGATTGGGAGTGGCACGCCTCCA
CCCCGAACAAGGTCTCAATTTGATTTGGTGCTGCGAGTTTCTTGGCTGAC
ACTGGGGGGATGGCGCGTGTCATGCGAGGATAGTGCTTTTCCCGCCTGGC
GCATGCCATGCACCTGTACCGTAATGCATCGCGAGATCGAAGAGTGGCGT
AAAGGCAACGTTGGGGGGAGGGGGGGGTCGTGCAATGGTAACCGCGAAAT
AGCGTGAACCTCGTGATTTTCTCCATTGAACTTGACTCGCTTCATAGTCG
GAGCGTTCCTCGGCGAGGTAGACAGCTCAGAGTACATCACACACCGTTTC
GATGCCGAAAACAACAACAACAACAATAACAACAGCGACAACAACAGTCA
GAACAACAATCCACAACCAACAACACGTTCAAAATATGTTCTGTTTTGCT
GAAGGAATGTCCGAGCGGTGGGAAGAGACGTACGAAAGCGAAGACTCGTA
TTTCCCTTCGAGTGAGACGACGACGACGGCGGCGGCGGATGGCGGCGGCA
GATCAACCCTTCATACATGCCATCGTCCTTGGGGAAGCAGCCGGTGGGGG
AGCGACCAACCACCAGGAAGCAATCCACGACAAGAGGCTGGCATTGGTTG
TACAAGGAAAGGACACCCTGGCACTCGGGGCGACGAAGGTCGGGTTGAAG
GGGAGGCGCGCGGATGGGCTGGAGGTGGAGCAAGCACCGTAGGTGGTGGG
CTGGTGTGGCCGGCGCACCGCGGCGCATTGCCGTCTGCCGCGGCCGGACG
GCGTCCGGCTCGAGACAAACAGTCCTGAAATAGGGATCGGGGTCGACAAT
GGGTTGGTCTTGTGTGTGTTTTGGAGTATTTACTCGTAGCACCAAGCACG
GGAAGGTGTGGTTTTGTCTCTTGATGCGCCCCCTATGGCCAAAGGTGCCC
CGTGTATCGGTCTTGAAGTAAATGGGTATGTGGCACCATGGCGCACTCCG
ATGCTTCGCCGGCTGGAGTATCTGGTCAAAGCGAGTTTCAATGCGAACGA
TGAGCGTGTGAGTGTTGTCTTGCGGCTTGCGTTCATGGGCGTCAGCGATC
GTAACTGTT back to topCoding sequence (CDS) from alignment at Scaffold_389:625243..628801- >EsuBft1016_5a-0001 ID=EsuBft1016_5a-0001|Name=EsuBft1016_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=687bp|location=Sequence derived from alignment at Scaffold_389:625243..628801- (Ectocarpus subulatus male Bft15b)
ATGGACGCATCCGCGGGCAAGAACTTCGACCCTCATCACGCCAGAATCCT
GGTCGTCGGGCCCATGGCAGCGGGCAAGACAACTCTGGTGCATTCCTTCT
GCCACGGCGGCGTTGGGAATGGCGTGCCAGGAAACAGGCTACCCACCGTC
GGGTGCAGTGTCGACGTCAAGCTGCTCGCAGGAGGGCACCCGAACCGGTC
CATCGAGTTCTGGGACGTGGGCGGAAGACCCGACGCCGCCCTTGCTCGAG
GCATGTTCTTTGAAGGATGCGAAGCGGCAGGGGTGCTCCTGGTATATGAT
GTGTCTACCCCGAGGTCGCTGCGAGACCTACGCGTGTGGGTCGCCGAGCT
CGACTCCGCCGGGATCTCAGTTCTCGGCGAGAGCGACAACAACGGCCGCT
CGAGTGCCACCGCCCCGTACGCGAGGAGCTTGAGGAGCACCGAACATCCA
CCGTATTTCTTCTCGGAAGGACTGACCGCCGACCTGGAAGGAGGAGGGTC
TGGAACAGCAGCGGTAGGCGGCGGTAGGATCCCTCTCATGGTGGTCGGGG
CCAAGGCGGATACCGGAGAAGGCGTGCGGCGCGAGGGGGGGGCGCTAGCG
TCGGAGCTCGGCGCCGGGCACGTGGCTGTGAAAGTGCGCTTCGAAACTGT
CGAACGAGGAGGAGGCGTTATTCGGCAGGTTCTTTAG back to top
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