EsuBft1016_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1016_5a-0001
Unique NameEsuBft1016_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_389contigScaffold_389:625243..628801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6669.EFX70308
ProteomeIdEsuBft1016_5
Protein domainsIPR013684
Protein domainsIPR027417
Protein domainsPTHR24073
Ownerapollo_admin@sb-roscoff.fr
Noterab-like protein 3 os:gallus gallus gn:rabl3 pe:2 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl33208|Metazoa
Length1598
Hectar predicted targeting categoryother localisation
Evalue1.01e-15
EggNOG OGs2CN0E@1|root,2QT3S@2759|Eukaryota,39WC4@33154|Opisthokonta,3BGWV@33208|Metazoa,3D1PY@33213|Bilateria,41TSW@6656|Arthropoda
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameRABL3
KEGG koko:K07933
GOsGO:0003674,GO:0003824,GO:0003924,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111
DescriptionGTP binding. It is involved in the biological process described with small GTPase mediated signal transduction
COG categoryU
BRITEko00000,ko04031
Cross References
External references for this mRNA
DatabaseAccession
GO1901360
GO0032401
GO0010008
GO0031344
GO0044087
GO0030154
GO0045056
GO0006519
GO0055037
GO0046394
GO0051960
GO0031988
GO0005525
GO0007268
GO0003824
GO0098590
GO0007264
GO0036477
GO0065008
GO0042995
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1016_5aEsuBft1016_5aEctocarpus subulatus male Bft15bgeneScaffold_389 625243..628801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1016_5a-0001EsuBft1016_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_389 626389..628391 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1016_5a-0001-exonagat-exon-21246Ectocarpus subulatus male Bft15bexonScaffold_389 625243..625897 -
EsuBft1016_5a-0001-exonagat-exon-21245Ectocarpus subulatus male Bft15bexonScaffold_389 626339..626445 -
EsuBft1016_5a-0001-exonEsuBft1016_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_389 626951..627266 -
EsuBft1016_5a-0001-exonagat-exon-21244Ectocarpus subulatus male Bft15bexonScaffold_389 627615..627757 -
EsuBft1016_5a-0001-exonagat-exon-21243Ectocarpus subulatus male Bft15bexonScaffold_389 628221..628497 -
EsuBft1016_5a-0001-exonagat-exon-21247Ectocarpus subulatus male Bft15bexonScaffold_389 628702..628801 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1016_5a-0001-exonagat-three_prime_utr-168Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_389 625243..625897 -
EsuBft1016_5a-0001-exonagat-three_prime_utr-169Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_389 626339..626388 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1016_5a-0001-cdsEsuBft1016_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_389 626389..626445 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1016_5a-0001-exonagat-five_prime_utr-100Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_389 628392..628497 -
EsuBft1016_5a-0001-exonagat-five_prime_utr-101Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_389 628702..628801 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1016_5a-0001 ID=EsuBft1016_5a-0001|Name=EsuBft1016_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1598bp|location=Sequence derived from alignment at Scaffold_389:625243..628801- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCTGCGCGCACTCTGCACTGTTCACACACCCCAGCCGTGCATTGGATCA
TCTGCGTTTCCTATCTCTCTCTCTCTCTTTCGCTTTTTCTTTCTCTCGAG
AGACACGTCCATCCTTACCACAACCTCTTGTGAAGGAAGGGACAGAGAGG
GAGAGCGAGAGAGAGACATAGAGGCGGCATAGGTGCGCAGAAGAAGCGGA
GCTTCGATGGACGCATCCGCGGGCAAGAACTTCGACCCTCATCACGCCAG
AATCCTGGTCGTCGGGCCCATGGCAGCGGGCAAGACAACTCTGGTGCATT
CCTTCTGCCACGGCGGCGTTGGGAATGGCGTGCCAGGAAACAGGCTACCC
ACCGTCGGGTGCAGTGTCGACGTCAAGCTGCTCGCAGGAGGGCACCCGAA
CCGGTCCATCGAGTTCTGGGACGTGGGCGGAAGACCCGACGCCGCCCTTG
CTCGAGGCATGTTCTTTGAAGGATGCGAAGCGGCAGGGGTGCTCCTGGTA
TATGATGTGTCTACCCCGAGGTCGCTGCGAGACCTACGCGTGTGGGTCGC
CGAGCTCGACTCCGCCGGGATCTCAGTTCTCGGCGAGAGCGACAACAACG
GCCGCTCGAGTGCCACCGCCCCGTACGCGAGGAGCTTGAGGAGCACCGAA
CATCCACCGTATTTCTTCTCGGAAGGACTGACCGCCGACCTGGAAGGAGG
AGGGTCTGGAACAGCAGCGGTAGGCGGCGGTAGGATCCCTCTCATGGTGG
TCGGGGCCAAGGCGGATACCGGAGAAGGCGTGCGGCGCGAGGGGGGGGCG
CTAGCGTCGGAGCTCGGCGCCGGGCACGTGGCTGTGAAAGTGCGCTTCGA
AACTGTCGAACGAGGAGGAGGCGTTATTCGGCAGGTTCTTTAGAGAAGTC
TTTCGACATCACTCCGGCCTGCAGGCGCCGCCGCTGGGCGAAGGAATGTC
CGAGCGGTGGGAAGAGACGTACGAAAGCGAAGACTCGTATTTCCCTTCGA
GTGAGACGACGACGACGGCGGCGGCGGATGGCGGCGGCAGATCAACCCTT
CATACATGCCATCGTCCTTGGGGAAGCAGCCGGTGGGGGAGCGACCAACC
ACCAGGAAGCAATCCACGACAAGAGGCTGGCATTGGTTGTACAAGGAAAG
GACACCCTGGCACTCGGGGCGACGAAGGTCGGGTTGAAGGGGAGGCGCGC
GGATGGGCTGGAGGTGGAGCAAGCACCGTAGGTGGTGGGCTGGTGTGGCC
GGCGCACCGCGGCGCATTGCCGTCTGCCGCGGCCGGACGGCGTCCGGCTC
GAGACAAACAGTCCTGAAATAGGGATCGGGGTCGACAATGGGTTGGTCTT
GTGTGTGTTTTGGAGTATTTACTCGTAGCACCAAGCACGGGAAGGTGTGG
TTTTGTCTCTTGATGCGCCCCCTATGGCCAAAGGTGCCCCGTGTATCGGT
CTTGAAGTAAATGGGTATGTGGCACCATGGCGCACTCCGATGCTTCGCCG
GCTGGAGTATCTGGTCAAAGCGAGTTTCAATGCGAACGATGAGCGTGTGA
GTGTTGTCTTGCGGCTTGCGTTCATGGGCGTCAGCGATCGTAACTGTT
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protein sequence of EsuBft1016_5a-0001

>EsuBft1016_5 ID=EsuBft1016_5|Name=EsuBft1016_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=228bp
MDASAGKNFDPHHARILVVGPMAAGKTTLVHSFCHGGVGNGVPGNRLPTV
GCSVDVKLLAGGHPNRSIEFWDVGGRPDAALARGMFFEGCEAAGVLLVYD
VSTPRSLRDLRVWVAELDSAGISVLGESDNNGRSSATAPYARSLRSTEHP
PYFFSEGLTADLEGGGSGTAAVGGGRIPLMVVGAKADTGEGVRREGGALA
SELGAGHVAVKVRFETVERGGGVIRQVL
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mRNA from alignment at Scaffold_389:625243..628801-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1016_5a-0001 ID=EsuBft1016_5a-0001|Name=EsuBft1016_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3559bp|location=Sequence derived from alignment at Scaffold_389:625243..628801- (Ectocarpus subulatus male Bft15b)
TGCTGCGCGCACTCTGCACTGTTCACACACCCCAGCCGTGCATTGGATCA
TCTGCGTTTCCTATCTCTCTCTCTCTCTTTCGCTTTTTCTTTCTCTCGAG
GTAGGTGACCGCGAGTGTGCTCTGTGCTGATTGCCGCGTGAAATCTCGAC
AGTCGTTGTCGCCAAGAAAATTGATCGTGTGTATAGCACTGCTGCACTGC
TACCGTGCCATTGTTGTCCAGATATGTTCCAGAGACACAGCATGCTCGGT
TCGCATCTAGCGCCTGCTGTCGCCACCCGCCGCATTCCTGGTGCTTATCA
GCAGAGACACGTCCATCCTTACCACAACCTCTTGTGAAGGAAGGGACAGA
GAGGGAGAGCGAGAGAGAGACATAGAGGCGGCATAGGTGCGCAGAAGAAG
CGGAGCTTCGATGGACGCATCCGCGGGCAAGAACTTCGACCCTCATCACG
CCAGAATCCTGGTCGTCGGGCCCATGGCAGCGGGCAAGACAACTCTGGTG
CATTCCTTCTGCCACGGCGGCGTTGGGAATGGCGTGCCAGGAAACAGGCT
ACCCACCGTCGGGTGCAGTGTCGACGTCAAGGTGCAACTCGAGACAAAAG
GAACTACTTCTATTTGTTACTGCTGTAGCTGGTGTTTACGGGGCTACAGT
AGTCTACCAGATAAACGTGTCTTTAGTTTTCGAAGATGTCGTAGATCCAT
TCCGACGACCGTATCGTCCAGCATATCAGTGATCTGCGTGATGACTAGGA
CGGGTGCCAGGTGTCGTTCCTGATCGCAAATCGGTCAACACTGCCGTGTT
ACATTTGCATTTGGTCGTCAGGAGCAACTTCCTTGCGCAAGCGACATCTG
CACTTTTCCACGGCAGCAAGCAGTCCCTGTGGAACCTGCGTCGCGAGCGT
TTGTTCTCTGCTGGGCCCTTCTTGCTTGTTTCCCAACCTCAAAGCGTTGG
ATAACACACCACACAGCTTCCTCTGAAAGTATGACTAAAGGTATCGGTGA
TGCCAGCTGGTACTCATTACAAAACACTTCTTGCCCACATGCAGCTGCTC
GCAGGAGGGCACCCGAACCGGTCCATCGAGTTCTGGGACGTGGGCGGAAG
ACCCGACGCCGCCCTTGCTCGAGGCATGTTCTTTGAAGGATGCGAAGCGG
CAGGGGTGCTCCTGGTATATGATGTGTCTACCCCGAGGTGAAGTGTAACG
CCTTCGCCGTGTCACCCGGACGATGGTTTAGGGTCGTGCGAGATGCTGTC
ACGAGAAATGCCCGCCGTCGATTTCTATCTCTTGGCCACCTCCGATTTTA
TCGCCCCATGAGAACCATTTGTCAGACAGCGCGTCTGCCGCGGTCACGAT
GCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNN
NNNNNNNCGATGCCCCCCCCCCCCCACGTGCCCCGACCCAACGCCCTGTT
ATGTTTTCTGCGCACGTGTGGCGACCACAACCGCTGCTACCAACAACAAC
AACAACAACAACAACAACAACCACAACCAAAAAAGGTCGCTGCGAGACCT
ACGCGTGTGGGTCGCCGAGCTCGACTCCGCCGGGATCTCAGTTCTCGGCG
AGAGCGACAACAACGGCCGCTCGAGTGCCACCGCCCCGTACGCGAGGAGC
TTGAGGAGCACCGAACATCCACCGTATTTCTTCTCGGAAGGACTGACCGC
CGACCTGGAAGGAGGAGGGTCTGGAACAGCAGCGGTAGGCGGCGGTAGGA
TCCCTCTCATGGTGGTCGGGGCCAAGGCGGATACCGGAGAAGGCGTGCGG
CGCGAGGGGGGGGCGCTAGCGTCGGAGCTCGGCGCCGGGCACGTGGCTGT
GGTGAGAAACCGAGCCTCGGGCCAGCCGGTGGATAGTGATAGGAGGTGGG
GGCCGGGGGCGTAGTCATGTTTTGCATGACTTAAATAATAGACCATCCAT
TGACCACACATCCTAGAAAGGAAGGGAGGTTGGACTGCTGCCTAAGGCCT
GTTTACCTGCTAAGGCCCGTACTGGGTTGATCTTTTTTCACGCGAGTCGC
CGTCGATGGCCTCCAGCCTGATCTTGATCGTGAATCCCCGTGGAATGTCC
GTAGGTGCGATGTGCCTTTGTCACTACTGTTGTATTCTCGGGGGAAACTT
TTCACTCTGCGTTGTGTGCGGTGCAGCCTCCTCCAGATGATGGAGGCCTC
CGTGGCACTCCGAAAAATATCTAGACTCGACCTCGCCCCCTTTGACACGC
GTGTCTTGTTTTATTATTCGTCGTCGATCTTGTCCTGCGCGTTCCCTGCT
TTGTGACATCGTGAACCTCTCGCGGTACACATGTACCCACACCCCACCGG
TGAAAGAAAGTGCGCTTCGAAACTGTCGAACGAGGAGGAGGCGTTATTCG
GCAGGTTCTTTAGAGAAGTCTTTCGACATCACTCCGGCCTGCAGGCGCCG
CCGCTGGGCGAAGGTGAGATCCTTTCTGGATTGGGAGTGGCACGCCTCCA
CCCCGAACAAGGTCTCAATTTGATTTGGTGCTGCGAGTTTCTTGGCTGAC
ACTGGGGGGATGGCGCGTGTCATGCGAGGATAGTGCTTTTCCCGCCTGGC
GCATGCCATGCACCTGTACCGTAATGCATCGCGAGATCGAAGAGTGGCGT
AAAGGCAACGTTGGGGGGAGGGGGGGGTCGTGCAATGGTAACCGCGAAAT
AGCGTGAACCTCGTGATTTTCTCCATTGAACTTGACTCGCTTCATAGTCG
GAGCGTTCCTCGGCGAGGTAGACAGCTCAGAGTACATCACACACCGTTTC
GATGCCGAAAACAACAACAACAACAATAACAACAGCGACAACAACAGTCA
GAACAACAATCCACAACCAACAACACGTTCAAAATATGTTCTGTTTTGCT
GAAGGAATGTCCGAGCGGTGGGAAGAGACGTACGAAAGCGAAGACTCGTA
TTTCCCTTCGAGTGAGACGACGACGACGGCGGCGGCGGATGGCGGCGGCA
GATCAACCCTTCATACATGCCATCGTCCTTGGGGAAGCAGCCGGTGGGGG
AGCGACCAACCACCAGGAAGCAATCCACGACAAGAGGCTGGCATTGGTTG
TACAAGGAAAGGACACCCTGGCACTCGGGGCGACGAAGGTCGGGTTGAAG
GGGAGGCGCGCGGATGGGCTGGAGGTGGAGCAAGCACCGTAGGTGGTGGG
CTGGTGTGGCCGGCGCACCGCGGCGCATTGCCGTCTGCCGCGGCCGGACG
GCGTCCGGCTCGAGACAAACAGTCCTGAAATAGGGATCGGGGTCGACAAT
GGGTTGGTCTTGTGTGTGTTTTGGAGTATTTACTCGTAGCACCAAGCACG
GGAAGGTGTGGTTTTGTCTCTTGATGCGCCCCCTATGGCCAAAGGTGCCC
CGTGTATCGGTCTTGAAGTAAATGGGTATGTGGCACCATGGCGCACTCCG
ATGCTTCGCCGGCTGGAGTATCTGGTCAAAGCGAGTTTCAATGCGAACGA
TGAGCGTGTGAGTGTTGTCTTGCGGCTTGCGTTCATGGGCGTCAGCGATC
GTAACTGTT
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Coding sequence (CDS) from alignment at Scaffold_389:625243..628801-

>EsuBft1016_5a-0001 ID=EsuBft1016_5a-0001|Name=EsuBft1016_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=687bp|location=Sequence derived from alignment at Scaffold_389:625243..628801- (Ectocarpus subulatus male Bft15b)
ATGGACGCATCCGCGGGCAAGAACTTCGACCCTCATCACGCCAGAATCCT
GGTCGTCGGGCCCATGGCAGCGGGCAAGACAACTCTGGTGCATTCCTTCT
GCCACGGCGGCGTTGGGAATGGCGTGCCAGGAAACAGGCTACCCACCGTC
GGGTGCAGTGTCGACGTCAAGCTGCTCGCAGGAGGGCACCCGAACCGGTC
CATCGAGTTCTGGGACGTGGGCGGAAGACCCGACGCCGCCCTTGCTCGAG
GCATGTTCTTTGAAGGATGCGAAGCGGCAGGGGTGCTCCTGGTATATGAT
GTGTCTACCCCGAGGTCGCTGCGAGACCTACGCGTGTGGGTCGCCGAGCT
CGACTCCGCCGGGATCTCAGTTCTCGGCGAGAGCGACAACAACGGCCGCT
CGAGTGCCACCGCCCCGTACGCGAGGAGCTTGAGGAGCACCGAACATCCA
CCGTATTTCTTCTCGGAAGGACTGACCGCCGACCTGGAAGGAGGAGGGTC
TGGAACAGCAGCGGTAGGCGGCGGTAGGATCCCTCTCATGGTGGTCGGGG
CCAAGGCGGATACCGGAGAAGGCGTGCGGCGCGAGGGGGGGGCGCTAGCG
TCGGAGCTCGGCGCCGGGCACGTGGCTGTGAAAGTGCGCTTCGAAACTGT
CGAACGAGGAGGAGGCGTTATTCGGCAGGTTCTTTAG
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