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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FXC2 |
| ProteomeId | EsuBft937_7 |
| Protein domains | IPR001680 |
| Protein domains | IPR017986 |
| Protein domains | IPR015943 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | peptidyl-prolyl cis-trans isomerase cyp71 os:arabidopsis thaliana gn:cyp71 pe:1 sv:1 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 561 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.51e-48 |
| EggNOG OGs | KOG0882@1|root,KOG0882@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | PPWD1 |
| KEGG ko | ko:K12736,ko:K14569 |
| KEGG Pathway | ko03008,map03008 |
| GOs | GO:0000003,GO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0000785,GO:0000790,GO:0003002,GO:0003006,GO:0003674,GO:0003682,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007389,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009908,GO:0009909,GO:0009933,GO:0009965,GO:0009987,GO:0010015,GO:0010016,GO:0010051,GO:0010073,GO:0010075,GO:0010082,GO:0010305,GO:0010338,GO:0010358,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016018,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019219,GO:0019222,GO:0019538,GO:0022414,GO:0022622,GO:0031056,GO:0031060,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033218,GO:0034641,GO:0036211,GO:0040008,GO:0040029,GO:0042277,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048364,GO:0048366,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048442,GO:0048443,GO:0048444,GO:0048447,GO:0048449,GO:0048453,GO:0048464,GO:0048466,GO:0048467,GO:0048507,GO:0048509,GO:0048519,GO:0048523,GO:0048532,GO:0048580,GO:0048608,GO:0048638,GO:0048646,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:0140096,GO:1901360,GO:1901564,GO:1902275,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905392,GO:1905393,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2000280,GO:2001141 |
| EC | 5.2.1.8 |
| Description | peptidyl-prolyl cis-trans isomerase activity |
| COG category | O |
| BRITE | ko00000,ko00001,ko01000,ko03009,ko03041,ko03110 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0019219 |
| GO | 0010305 |
| GO | 0042393 |
| GO | 0003682 |
| GO | 0048453 |
| GO | 0009933 |
| GO | 0031060 |
| GO | 0010082 |
| GO | 0008380 |
| GO | 0010358 |
| GO | 0070647 |
| GO | 0010338 |
| GO | 0033036 |
| GO | 0048522 |
| GO | 0071013 |
| GO | 0009909 |
| GO | 0048443 |
| GO | 0048440 |
| GO | 0009628 |
| GO | 0005515 |
| GO | 0000003 |
| GO | 0007049 |
| GO | 0006310 |
| GO | 0048468 |
| GO | 0006397 |
| GO | 0065008 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft937_7a-0001 ID=EsuBft937_7a-0001|Name=EsuBft937_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=561bp|location=Sequence derived from alignment at Scaffold_376:126819..129114- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGATTCCAAGGGGAGAGTGGCGGTGGCGGATGCGGACTCCCCCGCGAT
ACGAGTGTACGTATCGGACGGCTCTACGGACGCCGTGGGGCAGTTCGACG
GGCACAGTAGCCCCGTCCTGTCGTTGGCGTTCAACGAGCCCGCCAAGACG
GTCGTGTCCGCTGACAGGAGCGGCGTGTTGGAGTACTGGAGTGCGGATGA
CTACGGCCGCCCCCCGGCACGGGCGGTGAAGTTCAAGTTTAAGATGGACA
CGGACCTGTACGATCTGGCCAAGGCCAAGACGCGGCCTTGCAGCATCTCC
TTCAGCCCGGATGGGAAGAGCATGGCCGTCACCGCCAGGGATAAGCAGGC
ATGGTCGGTTCGAGCGTTCGACTTCCGAACCGGGAAGCTGCGGCGCAAGT
ACGACGAGAGCAGGAGGGCGATGGAGGACATGCTCGCCTCGGGACAGCTC
AAGATGGATGCCATGGACCTCGGAAAGAAGTCTGCCGTGGAGAAGGAGCT
GGAGGTATCTACGGCGCATTTTGCAGGATTTGTGACACCACAAGGCCGAT
TTTCTGTTTGA back to topprotein sequence of EsuBft937_7a-0001 >EsuBft937_7 ID=EsuBft937_7|Name=EsuBft937_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=186bp
MDSKGRVAVADADSPAIRVYVSDGSTDAVGQFDGHSSPVLSLAFNEPAKT
VVSADRSGVLEYWSADDYGRPPARAVKFKFKMDTDLYDLAKAKTRPCSIS
FSPDGKSMAVTARDKQAWSVRAFDFRTGKLRRKYDESRRAMEDMLASGQL
KMDAMDLGKKSAVEKELEVSTAHFAGFVTPQGRFSV back to topmRNA from alignment at Scaffold_376:126819..129114- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft937_7a-0001 ID=EsuBft937_7a-0001|Name=EsuBft937_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2296bp|location=Sequence derived from alignment at Scaffold_376:126819..129114- (Ectocarpus subulatus male Bft15b)
ATGGATTCCAAGGTACACACGATCACACATGCCATCCTCACACCCCTCTC
AATTCCCCGTTCATAGTTCTTTGGAAGCATACAACCTATATATCAGTCAG
ATAATCCTACACCAAAACCTATGTTGTCATACGATCCTACACTATACCTA
CGTAGTCAGATAATCCTACGCTAAAACCTACTAGTATATAGTTAAGCGTT
CATATTCACCGCAGAGATAAAAGAAACTAGCCTCAGGTAAAATAGGCGGT
TTTTGTGTGGTGGTTCGTTCTTTCTGTAAGAATGTCAATTTCCCCCGACT
ATCACACATTTCAACCTCACACGCATCTCAGTTCTCCGTTCGTGGTTCTC
TGGATGCATGCCTCCTCATTGTAGAACCATGCTTGTCTTCCGATTGTGCG
TCCTCAACATAGAGAATTGTAATACATCAGTAGTCCATTGCACTCCTACC
CTGTACAAATTTAAGTCAAGCGGGGCCAACTTTCAGCATCAGGCACGCGA
TATTTCTCCGATCATCGACCGCGTGGGTTTCGACTTTCTTTTGGCGTGCT
TTTTTTTTCTTTTGTGACAGGGGAGAGTGGCGGTGGCGGATGCGGACTCC
CCCGCGATACGAGTGTACGTATCGGACGGCTCTACGGACGCCGTGGGGCA
GTTCGACGGGCACAGTAGCCCCGTCCTGTCGTTGGCGTTCAACGAGCCCG
CCAAGACGGTCGTGTCCGCTGACAGGTACGTCGTGCGTGCGTGTTGTCTA
CACTTGTTTTTGAACATTGTATACCTGTTCTAGGTACGTTAGCCTGTGTC
CACGGAAATTGACCGAGTCAAGTGCTGGATTAGTACGGAGAGATTGAGAC
AGAAGGAGGTACTGGATAGAGAGACCGGGATGGTTTTTAATGTGAAGACA
ACAACAACAACAACTCTTATGTACCCGTTCGAGTATTTTTGTATAGCTTC
GTTGTGGGAAGCATCGACCAATGTACGTTGCGGAGTGATGAATAGGAGAT
GTCGGTCCCAGTGCGGCTAAGACCGGAACACGCCTCGGAAGGCCATGCTT
TGGGTGCGGTGACGTGGTTTGTTGGCGATCAAACGAGCCGACCAAGACGG
TCGTGCCCGCTGACAGGTGTGTCGTGCGTGCGTGTGTGTGTGTGTGTTTC
TTATTTTGTTTATGTTGGCATTTACCGTGTCAACCGGCTGAAAAATAACA
TGATGTCAGCCTCCGTGCGGTTGAAAACACAAAATGCTTCCAAAGGCCAT
GATCTGGGTGAGGCTATGGGTGTCATTACCATGGTAATAGTTATCGAGAA
GGCAGTATTCATTTATTTTCTCCGTCCTTTGAAACTCCCAAAAATGAGGG
GAAAAGGTGCACGGGCGAGAATTTTAGCACACCGACTATTTTGTGTACAG
TCCTTGTACCTTCTGCTGCTGATGAGAAAGGTTTGTGTGTACACGTGTGT
TTCACATGTGTTTCATGAGTTGGCTGCCTTAACAATTTGAACCGCTAGGC
CAAATCTCCCTTTGCGTGAAACCATTTTGCGCACACGATTATTTGCTTAG
GAGCGGCGTGTTGGAGTACTGGAGTGCGGATGACTACGGCCGCCCCCCGG
CACGGGCGGTGAAGTTCAAGTTTAAGATGGACACGGACCTGTACGATCTG
GCCAAGGCCAAGACGCGGCCTTGCAGCATCTCCTTCAGCCCGGATGGGAA
GAGCATGGCCGTCACCGCCAGGGATAAGCAGGCATGGTCGGTGGAGGGGG
GGGGATGTCCTCGTGTGTTGCATGCCTTAGTTTTTAGACCATTGACCACG
CATCCTGGAGAGAACGGAGGATTGGACCGATCACCGACGGCCAATTGTTC
TTGACCTACTGAGCTGAAGGTGGCTCAGGTGCGGTCGGGGGACGGGTCAT
TGTTGTTTTAGCTGCCGATGCTGCGGCTGTTTCGTATTTTTTTATGGTAG
TAGTGAGTGTCCTGGTAATGGCGGCCTAACCATAAGGTAGGGTACCAACC
CTACGCCCCTAGCCCACCCTCTTACGAAACAAAGCCATGGACTTCTCTTC
TTGCTTTCGGGCTTTGTGGCGCCATCCTCACCCTGTACATAGGTTCGAGC
GTTCGACTTCCGAACCGGGAAGCTGCGGCGCAAGTACGACGAGAGCAGGA
GGGCGATGGAGGACATGCTCGCCTCGGGACAGCTCAAGATGGATGCCATG
GACCTCGGAAAGAAGTCTGCCGTGGAGAAGGAGCTGGAGGTATCTACGGC
GCATTTTGCAGGATTTGTGACACCACAAGGCCGATTTTCTGTTTGA back to topCoding sequence (CDS) from alignment at Scaffold_376:126819..129114- >EsuBft937_7a-0001 ID=EsuBft937_7a-0001|Name=EsuBft937_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=561bp|location=Sequence derived from alignment at Scaffold_376:126819..129114- (Ectocarpus subulatus male Bft15b)
ATGGATTCCAAGGGGAGAGTGGCGGTGGCGGATGCGGACTCCCCCGCGAT
ACGAGTGTACGTATCGGACGGCTCTACGGACGCCGTGGGGCAGTTCGACG
GGCACAGTAGCCCCGTCCTGTCGTTGGCGTTCAACGAGCCCGCCAAGACG
GTCGTGTCCGCTGACAGGAGCGGCGTGTTGGAGTACTGGAGTGCGGATGA
CTACGGCCGCCCCCCGGCACGGGCGGTGAAGTTCAAGTTTAAGATGGACA
CGGACCTGTACGATCTGGCCAAGGCCAAGACGCGGCCTTGCAGCATCTCC
TTCAGCCCGGATGGGAAGAGCATGGCCGTCACCGCCAGGGATAAGCAGGC
ATGGTCGGTTCGAGCGTTCGACTTCCGAACCGGGAAGCTGCGGCGCAAGT
ACGACGAGAGCAGGAGGGCGATGGAGGACATGCTCGCCTCGGGACAGCTC
AAGATGGATGCCATGGACCTCGGAAAGAAGTCTGCCGTGGAGAAGGAGCT
GGAGGTATCTACGGCGCATTTTGCAGGATTTGTGACACCACAAGGCCGAT
TTTCTGTTTGA back to top
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