EsuBft937_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft937_7a-0001
Unique NameEsuBft937_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_376contigScaffold_376:126819..129114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FXC2
ProteomeIdEsuBft937_7
Protein domainsIPR001680
Protein domainsIPR017986
Protein domainsIPR015943
Ownerapollo_admin@sb-roscoff.fr
Notepeptidyl-prolyl cis-trans isomerase cyp71 os:arabidopsis thaliana gn:cyp71 pe:1 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length561
Hectar predicted targeting categoryother localisation
Evalue2.51e-48
EggNOG OGsKOG0882@1|root,KOG0882@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred namePPWD1
KEGG koko:K12736,ko:K14569
KEGG Pathwayko03008,map03008
GOsGO:0000003,GO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0000785,GO:0000790,GO:0003002,GO:0003006,GO:0003674,GO:0003682,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007389,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009908,GO:0009909,GO:0009933,GO:0009965,GO:0009987,GO:0010015,GO:0010016,GO:0010051,GO:0010073,GO:0010075,GO:0010082,GO:0010305,GO:0010338,GO:0010358,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016018,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019219,GO:0019222,GO:0019538,GO:0022414,GO:0022622,GO:0031056,GO:0031060,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033218,GO:0034641,GO:0036211,GO:0040008,GO:0040029,GO:0042277,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048364,GO:0048366,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048442,GO:0048443,GO:0048444,GO:0048447,GO:0048449,GO:0048453,GO:0048464,GO:0048466,GO:0048467,GO:0048507,GO:0048509,GO:0048519,GO:0048523,GO:0048532,GO:0048580,GO:0048608,GO:0048638,GO:0048646,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:0140096,GO:1901360,GO:1901564,GO:1902275,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905392,GO:1905393,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2000280,GO:2001141
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
BRITEko00000,ko00001,ko01000,ko03009,ko03041,ko03110
Cross References
External references for this mRNA
DatabaseAccession
GO0019219
GO0010305
GO0042393
GO0003682
GO0048453
GO0009933
GO0031060
GO0010082
GO0008380
GO0010358
GO0070647
GO0010338
GO0033036
GO0048522
GO0071013
GO0009909
GO0048443
GO0048440
GO0009628
GO0005515
GO0000003
GO0007049
GO0006310
GO0048468
GO0006397
GO0065008
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft937_7aEsuBft937_7aEctocarpus subulatus male Bft15bgeneScaffold_376 126819..129114 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft937_7a-0001-exonagat-exon-34387Ectocarpus subulatus male Bft15bexonScaffold_376 126819..127022 -
EsuBft937_7a-0001-exonagat-exon-34388Ectocarpus subulatus male Bft15bexonScaffold_376 127375..127564 -
EsuBft937_7a-0001-exonagat-exon-34389Ectocarpus subulatus male Bft15bexonScaffold_376 128390..128544 -
EsuBft937_7a-0001-exonEsuBft937_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_376 129103..129114 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft937_7a-0001-cdsEsuBft937_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_376 126819..127022 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft937_7a-0001EsuBft937_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_376 126819..129114 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft937_7a-0001 ID=EsuBft937_7a-0001|Name=EsuBft937_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=561bp|location=Sequence derived from alignment at Scaffold_376:126819..129114- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCCAAGGGGAGAGTGGCGGTGGCGGATGCGGACTCCCCCGCGAT
ACGAGTGTACGTATCGGACGGCTCTACGGACGCCGTGGGGCAGTTCGACG
GGCACAGTAGCCCCGTCCTGTCGTTGGCGTTCAACGAGCCCGCCAAGACG
GTCGTGTCCGCTGACAGGAGCGGCGTGTTGGAGTACTGGAGTGCGGATGA
CTACGGCCGCCCCCCGGCACGGGCGGTGAAGTTCAAGTTTAAGATGGACA
CGGACCTGTACGATCTGGCCAAGGCCAAGACGCGGCCTTGCAGCATCTCC
TTCAGCCCGGATGGGAAGAGCATGGCCGTCACCGCCAGGGATAAGCAGGC
ATGGTCGGTTCGAGCGTTCGACTTCCGAACCGGGAAGCTGCGGCGCAAGT
ACGACGAGAGCAGGAGGGCGATGGAGGACATGCTCGCCTCGGGACAGCTC
AAGATGGATGCCATGGACCTCGGAAAGAAGTCTGCCGTGGAGAAGGAGCT
GGAGGTATCTACGGCGCATTTTGCAGGATTTGTGACACCACAAGGCCGAT
TTTCTGTTTGA
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protein sequence of EsuBft937_7a-0001

>EsuBft937_7 ID=EsuBft937_7|Name=EsuBft937_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=186bp
MDSKGRVAVADADSPAIRVYVSDGSTDAVGQFDGHSSPVLSLAFNEPAKT
VVSADRSGVLEYWSADDYGRPPARAVKFKFKMDTDLYDLAKAKTRPCSIS
FSPDGKSMAVTARDKQAWSVRAFDFRTGKLRRKYDESRRAMEDMLASGQL
KMDAMDLGKKSAVEKELEVSTAHFAGFVTPQGRFSV
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mRNA from alignment at Scaffold_376:126819..129114-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft937_7a-0001 ID=EsuBft937_7a-0001|Name=EsuBft937_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2296bp|location=Sequence derived from alignment at Scaffold_376:126819..129114- (Ectocarpus subulatus male Bft15b)
ATGGATTCCAAGGTACACACGATCACACATGCCATCCTCACACCCCTCTC
AATTCCCCGTTCATAGTTCTTTGGAAGCATACAACCTATATATCAGTCAG
ATAATCCTACACCAAAACCTATGTTGTCATACGATCCTACACTATACCTA
CGTAGTCAGATAATCCTACGCTAAAACCTACTAGTATATAGTTAAGCGTT
CATATTCACCGCAGAGATAAAAGAAACTAGCCTCAGGTAAAATAGGCGGT
TTTTGTGTGGTGGTTCGTTCTTTCTGTAAGAATGTCAATTTCCCCCGACT
ATCACACATTTCAACCTCACACGCATCTCAGTTCTCCGTTCGTGGTTCTC
TGGATGCATGCCTCCTCATTGTAGAACCATGCTTGTCTTCCGATTGTGCG
TCCTCAACATAGAGAATTGTAATACATCAGTAGTCCATTGCACTCCTACC
CTGTACAAATTTAAGTCAAGCGGGGCCAACTTTCAGCATCAGGCACGCGA
TATTTCTCCGATCATCGACCGCGTGGGTTTCGACTTTCTTTTGGCGTGCT
TTTTTTTTCTTTTGTGACAGGGGAGAGTGGCGGTGGCGGATGCGGACTCC
CCCGCGATACGAGTGTACGTATCGGACGGCTCTACGGACGCCGTGGGGCA
GTTCGACGGGCACAGTAGCCCCGTCCTGTCGTTGGCGTTCAACGAGCCCG
CCAAGACGGTCGTGTCCGCTGACAGGTACGTCGTGCGTGCGTGTTGTCTA
CACTTGTTTTTGAACATTGTATACCTGTTCTAGGTACGTTAGCCTGTGTC
CACGGAAATTGACCGAGTCAAGTGCTGGATTAGTACGGAGAGATTGAGAC
AGAAGGAGGTACTGGATAGAGAGACCGGGATGGTTTTTAATGTGAAGACA
ACAACAACAACAACTCTTATGTACCCGTTCGAGTATTTTTGTATAGCTTC
GTTGTGGGAAGCATCGACCAATGTACGTTGCGGAGTGATGAATAGGAGAT
GTCGGTCCCAGTGCGGCTAAGACCGGAACACGCCTCGGAAGGCCATGCTT
TGGGTGCGGTGACGTGGTTTGTTGGCGATCAAACGAGCCGACCAAGACGG
TCGTGCCCGCTGACAGGTGTGTCGTGCGTGCGTGTGTGTGTGTGTGTTTC
TTATTTTGTTTATGTTGGCATTTACCGTGTCAACCGGCTGAAAAATAACA
TGATGTCAGCCTCCGTGCGGTTGAAAACACAAAATGCTTCCAAAGGCCAT
GATCTGGGTGAGGCTATGGGTGTCATTACCATGGTAATAGTTATCGAGAA
GGCAGTATTCATTTATTTTCTCCGTCCTTTGAAACTCCCAAAAATGAGGG
GAAAAGGTGCACGGGCGAGAATTTTAGCACACCGACTATTTTGTGTACAG
TCCTTGTACCTTCTGCTGCTGATGAGAAAGGTTTGTGTGTACACGTGTGT
TTCACATGTGTTTCATGAGTTGGCTGCCTTAACAATTTGAACCGCTAGGC
CAAATCTCCCTTTGCGTGAAACCATTTTGCGCACACGATTATTTGCTTAG
GAGCGGCGTGTTGGAGTACTGGAGTGCGGATGACTACGGCCGCCCCCCGG
CACGGGCGGTGAAGTTCAAGTTTAAGATGGACACGGACCTGTACGATCTG
GCCAAGGCCAAGACGCGGCCTTGCAGCATCTCCTTCAGCCCGGATGGGAA
GAGCATGGCCGTCACCGCCAGGGATAAGCAGGCATGGTCGGTGGAGGGGG
GGGGATGTCCTCGTGTGTTGCATGCCTTAGTTTTTAGACCATTGACCACG
CATCCTGGAGAGAACGGAGGATTGGACCGATCACCGACGGCCAATTGTTC
TTGACCTACTGAGCTGAAGGTGGCTCAGGTGCGGTCGGGGGACGGGTCAT
TGTTGTTTTAGCTGCCGATGCTGCGGCTGTTTCGTATTTTTTTATGGTAG
TAGTGAGTGTCCTGGTAATGGCGGCCTAACCATAAGGTAGGGTACCAACC
CTACGCCCCTAGCCCACCCTCTTACGAAACAAAGCCATGGACTTCTCTTC
TTGCTTTCGGGCTTTGTGGCGCCATCCTCACCCTGTACATAGGTTCGAGC
GTTCGACTTCCGAACCGGGAAGCTGCGGCGCAAGTACGACGAGAGCAGGA
GGGCGATGGAGGACATGCTCGCCTCGGGACAGCTCAAGATGGATGCCATG
GACCTCGGAAAGAAGTCTGCCGTGGAGAAGGAGCTGGAGGTATCTACGGC
GCATTTTGCAGGATTTGTGACACCACAAGGCCGATTTTCTGTTTGA
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Coding sequence (CDS) from alignment at Scaffold_376:126819..129114-

>EsuBft937_7a-0001 ID=EsuBft937_7a-0001|Name=EsuBft937_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=561bp|location=Sequence derived from alignment at Scaffold_376:126819..129114- (Ectocarpus subulatus male Bft15b)
ATGGATTCCAAGGGGAGAGTGGCGGTGGCGGATGCGGACTCCCCCGCGAT
ACGAGTGTACGTATCGGACGGCTCTACGGACGCCGTGGGGCAGTTCGACG
GGCACAGTAGCCCCGTCCTGTCGTTGGCGTTCAACGAGCCCGCCAAGACG
GTCGTGTCCGCTGACAGGAGCGGCGTGTTGGAGTACTGGAGTGCGGATGA
CTACGGCCGCCCCCCGGCACGGGCGGTGAAGTTCAAGTTTAAGATGGACA
CGGACCTGTACGATCTGGCCAAGGCCAAGACGCGGCCTTGCAGCATCTCC
TTCAGCCCGGATGGGAAGAGCATGGCCGTCACCGCCAGGGATAAGCAGGC
ATGGTCGGTTCGAGCGTTCGACTTCCGAACCGGGAAGCTGCGGCGCAAGT
ACGACGAGAGCAGGAGGGCGATGGAGGACATGCTCGCCTCGGGACAGCTC
AAGATGGATGCCATGGACCTCGGAAAGAAGTCTGCCGTGGAGAAGGAGCT
GGAGGTATCTACGGCGCATTTTGCAGGATTTGTGACACCACAAGGCCGAT
TTTCTGTTTGA
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