Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FSK2 |
| ProteomeId | EsuBft2050_5 |
| Protein domains | IPR006912 |
| Protein domains | PTHR22930 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 67 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.62e-88 |
| EggNOG OGs | 2E2RF@1|root,2S9YA@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Plant transposon protein |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0016788 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2050_5a-0001 ID=EsuBft2050_5a-0001|Name=EsuBft2050_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=677bp|location=Sequence derived from alignment at Scaffold_376:22280..23006- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ACCGTGTGCTTGAGTGGTCAAAACAATTGTTTGGACGAGACATGTGTCCG
GCCTGAGACAGAGAGTGTAGACAGACAGACAGAAAAAGAGAGAGCGCTGG
CCAGCAAAGTCTTTGTTGTCAGGGAAAATGACGCAGCAGCTAGTTTCGGA
CCGTTTCAACGCAAACCGTTCATGGTATTGAGATGTCGGATACGGCAATC
AAAACCTCGATTGCCCTCACAGCTTCTAACAACTGGCAAATCCTGATCGA
GCCCTCCAAGTACCCGCTGAGCGAGAACGACCTGCTCTTTTTAAAGAGGC
TGGAGAGCGTACGCAAGGACGTGGAATGCTTCTTCGGCATCCTGAAGGGT
CGCTTTAGGATCCTGAAGCTCGCCATGGCGTACCAGAGCCAGGAGCGCAT
CGACAACGTGTTTTTCACGTGCTGCATCTTGCACAACATGCTGCACACCT
TCGACGGCATGGACCAGCTGGTGGAGAACACGAACTGGATTAGCAGTGCT
GGGGTGGGGGCCACGTTGGCGACGGAGCCGGAGGCGGACTGTGGATCTGT
CGGGACGAAGGACGTCAACGACCAGCCTCAATTGGAGATCGGGCACACGG
TGCGCAAGCGGCAGCTCACCACGAGCTTCGCGTACCGCAAGAAGCACAAG
AAGGACATTATCTGGCTTTCTAGGTAG back to topprotein sequence of EsuBft2050_5a-0001 >EsuBft2050_5 ID=EsuBft2050_5|Name=EsuBft2050_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=164bp
MSDTAIKTSIALTASNNWQILIEPSKYPLSENDLLFLKRLESVRKDVECF
FGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENT
NWISSAGVGATLATEPEADCGSVGTKDVNDQPQLEIGHTVRKRQLTTSFA
YRKKHKKDIIWLSR back to topmRNA from alignment at Scaffold_376:22280..23006- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2050_5a-0001 ID=EsuBft2050_5a-0001|Name=EsuBft2050_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=727bp|location=Sequence derived from alignment at Scaffold_376:22280..23006- (Ectocarpus subulatus male Bft15b)
ACCGTGTGCTTGAGTGGTCAAAACAATTGTTTGGACGAGACATGTGTCCG
GCCTGAGACAGAGAGTGTAGACAGACAGACAGAAAAAGAGAGAGCGCTGG
CCAGCAAAGTCTTTGTTGTCAGGGAAAATGACGCAGCAGCTAGTTTCGGA
CCGTTTCAACGCAAACCGTTCATGGTATTGAGATGTCGGATACGGCAATC
AAAACCTCGATTGCCCTCACAGCTTCTAACAACGTAGCACCGAACCCGTC
TTCGCCTTCCCTCTCTCTGTCGCGTTTTTCCAGTGGCAAATCCTGATCGA
GCCCTCCAAGTACCCGCTGAGCGAGAACGACCTGCTCTTTTTAAAGAGGC
TGGAGAGCGTACGCAAGGACGTGGAATGCTTCTTCGGCATCCTGAAGGGT
CGCTTTAGGATCCTGAAGCTCGCCATGGCGTACCAGAGCCAGGAGCGCAT
CGACAACGTGTTTTTCACGTGCTGCATCTTGCACAACATGCTGCACACCT
TCGACGGCATGGACCAGCTGGTGGAGAACACGAACTGGATTAGCAGTGCT
GGGGTGGGGGCCACGTTGGCGACGGAGCCGGAGGCGGACTGTGGATCTGT
CGGGACGAAGGACGTCAACGACCAGCCTCAATTGGAGATCGGGCACACGG
TGCGCAAGCGGCAGCTCACCACGAGCTTCGCGTACCGCAAGAAGCACAAG
AAGGACATTATCTGGCTTTCTAGGTAG back to topCoding sequence (CDS) from alignment at Scaffold_376:22280..23006- >EsuBft2050_5a-0001 ID=EsuBft2050_5a-0001|Name=EsuBft2050_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=495bp|location=Sequence derived from alignment at Scaffold_376:22280..23006- (Ectocarpus subulatus male Bft15b)
ATGTCGGATACGGCAATCAAAACCTCGATTGCCCTCACAGCTTCTAACAA
CTGGCAAATCCTGATCGAGCCCTCCAAGTACCCGCTGAGCGAGAACGACC
TGCTCTTTTTAAAGAGGCTGGAGAGCGTACGCAAGGACGTGGAATGCTTC
TTCGGCATCCTGAAGGGTCGCTTTAGGATCCTGAAGCTCGCCATGGCGTA
CCAGAGCCAGGAGCGCATCGACAACGTGTTTTTCACGTGCTGCATCTTGC
ACAACATGCTGCACACCTTCGACGGCATGGACCAGCTGGTGGAGAACACG
AACTGGATTAGCAGTGCTGGGGTGGGGGCCACGTTGGCGACGGAGCCGGA
GGCGGACTGTGGATCTGTCGGGACGAAGGACGTCAACGACCAGCCTCAAT
TGGAGATCGGGCACACGGTGCGCAAGCGGCAGCTCACCACGAGCTTCGCG
TACCGCAAGAAGCACAAGAAGGACATTATCTGGCTTTCTAGGTAG back to top
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