EsuBft2050_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2050_5a-0001
Unique NameEsuBft2050_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_376contigScaffold_376:22280..23006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FSK2
ProteomeIdEsuBft2050_5
Protein domainsIPR006912
Protein domainsPTHR22930
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length67
Hectar predicted targeting categoryother localisation
Evalue3.62e-88
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionPlant transposon protein
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0016788
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_5aEsuBft2050_5aEctocarpus subulatus male Bft15bgeneScaffold_376 22280..23006 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_5a-0001-exonEsuBft2050_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_376 22280..22723 -
EsuBft2050_5a-0001-exonagat-exon-33058Ectocarpus subulatus male Bft15bexonScaffold_376 22774..23006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_5a-0001-cdsEsuBft2050_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_376 22280..22723 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_5a-0001-exonagat-five_prime_utr-5127Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_376 22825..23006 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_5a-0001EsuBft2050_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_376 22280..22824 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2050_5a-0001 ID=EsuBft2050_5a-0001|Name=EsuBft2050_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=677bp|location=Sequence derived from alignment at Scaffold_376:22280..23006- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACCGTGTGCTTGAGTGGTCAAAACAATTGTTTGGACGAGACATGTGTCCG
GCCTGAGACAGAGAGTGTAGACAGACAGACAGAAAAAGAGAGAGCGCTGG
CCAGCAAAGTCTTTGTTGTCAGGGAAAATGACGCAGCAGCTAGTTTCGGA
CCGTTTCAACGCAAACCGTTCATGGTATTGAGATGTCGGATACGGCAATC
AAAACCTCGATTGCCCTCACAGCTTCTAACAACTGGCAAATCCTGATCGA
GCCCTCCAAGTACCCGCTGAGCGAGAACGACCTGCTCTTTTTAAAGAGGC
TGGAGAGCGTACGCAAGGACGTGGAATGCTTCTTCGGCATCCTGAAGGGT
CGCTTTAGGATCCTGAAGCTCGCCATGGCGTACCAGAGCCAGGAGCGCAT
CGACAACGTGTTTTTCACGTGCTGCATCTTGCACAACATGCTGCACACCT
TCGACGGCATGGACCAGCTGGTGGAGAACACGAACTGGATTAGCAGTGCT
GGGGTGGGGGCCACGTTGGCGACGGAGCCGGAGGCGGACTGTGGATCTGT
CGGGACGAAGGACGTCAACGACCAGCCTCAATTGGAGATCGGGCACACGG
TGCGCAAGCGGCAGCTCACCACGAGCTTCGCGTACCGCAAGAAGCACAAG
AAGGACATTATCTGGCTTTCTAGGTAG
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protein sequence of EsuBft2050_5a-0001

>EsuBft2050_5 ID=EsuBft2050_5|Name=EsuBft2050_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=164bp
MSDTAIKTSIALTASNNWQILIEPSKYPLSENDLLFLKRLESVRKDVECF
FGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENT
NWISSAGVGATLATEPEADCGSVGTKDVNDQPQLEIGHTVRKRQLTTSFA
YRKKHKKDIIWLSR
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mRNA from alignment at Scaffold_376:22280..23006-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2050_5a-0001 ID=EsuBft2050_5a-0001|Name=EsuBft2050_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=727bp|location=Sequence derived from alignment at Scaffold_376:22280..23006- (Ectocarpus subulatus male Bft15b)
ACCGTGTGCTTGAGTGGTCAAAACAATTGTTTGGACGAGACATGTGTCCG
GCCTGAGACAGAGAGTGTAGACAGACAGACAGAAAAAGAGAGAGCGCTGG
CCAGCAAAGTCTTTGTTGTCAGGGAAAATGACGCAGCAGCTAGTTTCGGA
CCGTTTCAACGCAAACCGTTCATGGTATTGAGATGTCGGATACGGCAATC
AAAACCTCGATTGCCCTCACAGCTTCTAACAACGTAGCACCGAACCCGTC
TTCGCCTTCCCTCTCTCTGTCGCGTTTTTCCAGTGGCAAATCCTGATCGA
GCCCTCCAAGTACCCGCTGAGCGAGAACGACCTGCTCTTTTTAAAGAGGC
TGGAGAGCGTACGCAAGGACGTGGAATGCTTCTTCGGCATCCTGAAGGGT
CGCTTTAGGATCCTGAAGCTCGCCATGGCGTACCAGAGCCAGGAGCGCAT
CGACAACGTGTTTTTCACGTGCTGCATCTTGCACAACATGCTGCACACCT
TCGACGGCATGGACCAGCTGGTGGAGAACACGAACTGGATTAGCAGTGCT
GGGGTGGGGGCCACGTTGGCGACGGAGCCGGAGGCGGACTGTGGATCTGT
CGGGACGAAGGACGTCAACGACCAGCCTCAATTGGAGATCGGGCACACGG
TGCGCAAGCGGCAGCTCACCACGAGCTTCGCGTACCGCAAGAAGCACAAG
AAGGACATTATCTGGCTTTCTAGGTAG
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Coding sequence (CDS) from alignment at Scaffold_376:22280..23006-

>EsuBft2050_5a-0001 ID=EsuBft2050_5a-0001|Name=EsuBft2050_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=495bp|location=Sequence derived from alignment at Scaffold_376:22280..23006- (Ectocarpus subulatus male Bft15b)
ATGTCGGATACGGCAATCAAAACCTCGATTGCCCTCACAGCTTCTAACAA
CTGGCAAATCCTGATCGAGCCCTCCAAGTACCCGCTGAGCGAGAACGACC
TGCTCTTTTTAAAGAGGCTGGAGAGCGTACGCAAGGACGTGGAATGCTTC
TTCGGCATCCTGAAGGGTCGCTTTAGGATCCTGAAGCTCGCCATGGCGTA
CCAGAGCCAGGAGCGCATCGACAACGTGTTTTTCACGTGCTGCATCTTGC
ACAACATGCTGCACACCTTCGACGGCATGGACCAGCTGGTGGAGAACACG
AACTGGATTAGCAGTGCTGGGGTGGGGGCCACGTTGGCGACGGAGCCGGA
GGCGGACTGTGGATCTGTCGGGACGAAGGACGTCAACGACCAGCCTCAAT
TGGAGATCGGGCACACGGTGCGCAAGCGGCAGCTCACCACGAGCTTCGCG
TACCGCAAGAAGCACAAGAAGGACATTATCTGGCTTTCTAGGTAG
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