EsuBft1013_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1013_10a-0001
Unique NameEsuBft1013_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_373contigScaffold_373:605947..609009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4792.ETI53028
ProteomeIdEsuBft1013_10
Protein domainsIPR027806
Protein domainsPTHR22930
Ownerapollo_admin@sb-roscoff.fr
Notenuclease harbi1 os:bos taurus gn:harbi1 pe:2 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl4776|Peronosporales
Length1495
Evalue1.75e-38
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota,3QI3U@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
Descriptionnuclease activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_10aEsuBft1013_10aEctocarpus subulatus male Bft15bgeneScaffold_373 605947..609009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_10a-0001EsuBft1013_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_373 606215..609009 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_10a-0001-exonagat-exon-63053Ectocarpus subulatus male Bft15bexonScaffold_373 605947..606448 +
EsuBft1013_10a-0001-exonagat-exon-63051Ectocarpus subulatus male Bft15bexonScaffold_373 606723..606741 +
EsuBft1013_10a-0001-exonagat-exon-63052Ectocarpus subulatus male Bft15bexonScaffold_373 607380..607615 +
EsuBft1013_10a-0001-exonEsuBft1013_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_373 608272..609009 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_10a-0001-exonagat-five_prime_utr-83Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_373 605947..606214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_10a-0001-cdsEsuBft1013_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_373 606215..606448 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1013_10a-0001 ID=EsuBft1013_10a-0001|Name=EsuBft1013_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1495bp|location=Sequence derived from alignment at Scaffold_373:605947..609009+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTGTCTTATCAGGCCAAAAAAATACGTACTTAGTATTTGGTTACGAAAC
CGCATTTTCTTGAAATATATGGAGGCGTTCCTCTACGTTTCCGTAAAAAG
AGCGAAGCGTATTTTTTCTGGGCTTGCTCCTTTTACGTTTCGGTGAAAAA
TTTCCCGCTTTTGTGCGACCACCAGAGCAGACACCAGTCACGCGTGCTGT
CTTCATCACACCACACGTAGACAGCACCAACAACACCCCAAAGTGCTTCC
CAAGGCAACTCCACTACCATGCCTGAGCGTGGGAAGCGTCAAGATCCCAG
GGGGATCGCAGCGCAACGCCGGGAGAAGCGCCGTCGGCGAGCTATCGACG
AGGAGGATGTAGCCCATGACAAGAGATTCACAGTCTTGGGTCTTGTGAGG
GCCGTAGTAGTGGCGGCGGGCGTCGTGGCAGCAGGAGAGGCTCATCGTGC
CCACTGCCCTCAGNAGCTGTTGCTCAAGCTGTATGTTCTCGGCATCGCCG
AGATGCAGCCGCCCACGGCAGCACTGCGGTCGCCAACCAACGGCGCCATA
GCTGTGGAAGTCCGCGTTGCCGCGGCGTTGAGGATCCTGGCTGGCGGCAG
TTACTGGGATGTTGCCCTCATGTTTGGCTTGTCGAGGGCGGTCACGTTCG
ACATCTTGTGGCAAGTGATCGATGCCATCAACGAGACGCCTGCGATTGGA
GCATTTGACTTCCCCCTGACCGAGGAAGGCTGCATGCGAAACTCCAACAG
ATTCAAGGAGAAGAGCACCGATGGCATTTTCTCCTGGGTCGTCGCCGCCG
TGGATGGTCTGTTCATCAAGGCCAAGGCTCCGTATGCGAAAGACACCGCC
AACGTCCTCGCGTACTACTCTGGCAGCAAGTCCGCGTACGGCATCAACGT
ACAAGCGATGTGCACCGCCGACTACCGGTTTTGCGCGATGTCGGCGATCT
CACCAGGCTCTACGAACGACTGGGTAGCATGGAATCGATCTTCCCTCGCC
AAGGCCGTCGCCCGCTTGCCCACCGGATTTCACATCATTGGTGACGCCGC
CTACCCCATCGGAGAAAAGCTTCTGACTCCGTACCCTGGGAGGCTCCTGC
CGGCGGGTGAGGACTCGTTCAACTTCCACCTGAGCCAGCTTCGTGTCAAG
ATCGAGCAGAGCTTCGGCATCCTGGTTTCGACTTGGGGCATTCTGTGGAT
ACCTCTCCGCGTGCAGTTTGGAGGACGCGCGGATCTCATCACGGCTCTTT
TCCATCTGCACAACTTCCTGCAAGACGAGAAGGTATCGCCGATCCAGGTT
GCAGAGGAGGACTCGCGCAGCGGACGCAACCGGCCGGCCCTCTGTGCTAC
GCAGCGCACCTTGCCGGATGGCTGGCAAACGGAGCAGCCGGCTCCTTCGA
GGAGCGGTGAGACCCCGGCCCGAGCGGCTATCCGCACGGCCCTGGAGTTG
AAGAAGCAGTGGAGGCCGGACTACAACCGCCGGAGGAATTCGTAA
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protein sequence of EsuBft1013_10a-0001

>EsuBft1013_10 ID=EsuBft1013_10|Name=EsuBft1013_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=408bp
MPERGKRQDPRGIAAQRREKRRRRAIDEEDVAHDKRFTVLGLVRAVVVAA
GVVAAGEAHRAHCPQXLLLKLYVLGIAEMQPPTAALRSPTNGAIAVEVRV
AAALRILAGGSYWDVALMFGLSRAVTFDILWQVIDAINETPAIGAFDFPL
TEEGCMRNSNRFKEKSTDGIFSWVVAAVDGLFIKAKAPYAKDTANVLAYY
SGSKSAYGINVQAMCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARL
PTGFHIIGDAAYPIGEKLLTPYPGRLLPAGEDSFNFHLSQLRVKIEQSFG
ILVSTWGILWIPLRVQFGGRADLITALFHLHNFLQDEKVSPIQVAEEDSR
SGRNRPALCATQRTLPDGWQTEQPAPSRSGETPARAAIRTALELKKQWRP
DYNRRRNS
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mRNA from alignment at Scaffold_373:605947..609009+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1013_10a-0001 ID=EsuBft1013_10a-0001|Name=EsuBft1013_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3063bp|location=Sequence derived from alignment at Scaffold_373:605947..609009+ (Ectocarpus subulatus male Bft15b)
TGTGTCTTATCAGGCCAAAAAAATACGTACTTAGTATTTGGTTACGAAAC
CGCATTTTCTTGAAATATATGGAGGCGTTCCTCTACGTTTCCGTAAAAAG
AGCGAAGCGTATTTTTTCTGGGCTTGCTCCTTTTACGTTTCGGTGAAAAA
TTTCCCGCTTTTGTGCGACCACCAGAGCAGACACCAGTCACGCGTGCTGT
CTTCATCACACCACACGTAGACAGCACCAACAACACCCCAAAGTGCTTCC
CAAGGCAACTCCACTACCATGCCTGAGCGTGGGAAGCGTCAAGATCCCAG
GGGGATCGCAGCGCAACGCCGGGAGAAGCGCCGTCGGCGAGCTATCGACG
AGGAGGATGTAGCCCATGACAAGAGATTCACAGTCTTGGGTCTTGTGAGG
GCCGTAGTAGTGGCGGCGGGCGTCGTGGCAGCAGGAGAGGCTCATCGTGC
CCACTGCCCTCAGNAGCTGTTGCTCAAGCTGTATGTTCTCGGCATCGCCG
AGGTAGTCAGCATCGCGAGAAATCAGGCCGAAACCAGCACGGATCGCTTT
TTGCGCCCGTGAGAAGGCGTGATGTGGAGCATGGCGGTTCTGATGAGCTC
ATCTCACAGCTGGGGCGAAGGGGTTTCGCAGGATAATTTTGGTTATGTGA
TACACCCGATGGTTCTGAAGAAAAACGCCAATTAATTCTCATTTTTGGAT
ACGTTCCCATTTTTCCCGCAAGTCTGTTCTTCGCTGGAAGTCAACGCTTT
CTTTGGCGGTGAATGTTGATGTGTAGATGCAGCCGCCCACGGCAGGTATG
CGTGATGAGGGTTCTTCTGGTGTATATGTAGAAAGCAACGGGGAAGAGCA
CAAGTCTAAAACATGTGCTGTACATAGACTAGTCTACACTGCTGTATGTT
CCTGTTGCCTTTTTTTAAAAAGCAACTCGCTCGTCGAACATGCGGCAGCA
GGGTACGTACAGCGCAGCAGCACTTTTGTACGATATGCATGCATCAGTAG
ACACATGCTTTGTACAGCAGCGGTCATTGTATGGGTTAAAGGCGAAGGTA
CTATTTGTGACGCTCACTACTACTGTGCAGCAGTATTCACAGGGCGTACA
GTACACGCCGGCCCCACTAAACAAATACAGCCTCGTCGGGAGCCGATACA
GATTGTCGTATCCCGCAATGACACAACAGCTATCGACACGTGCTCATCAT
TTGCAAAATGCGTATGTAGGTGATGAACACAGAGCCGCCTCCGTACCGTA
GTACATAGGTGGATTGGGCCGGCAATTTGACGAGTTTGCGGAGAACATGC
GTCCCCCGTCGTAGGTTGCTAAACTAGGTGCTGGCGATTGCAAACATGCC
CCCCTTGACACTCGTACTTCTGTCCTGAACGACACACGCTCATCCTGCAA
ACATTATCTGCGCGTCGCTCGGAAACCCCACAGCACTGCGGTCGCCAACC
AACGGCGCCATAGCTGTGGAAGTCCGCGTTGCCGCGGCGTTGAGGATCCT
GGCTGGCGGCAGTTACTGGGATGTTGCCCTCATGTTTGGCTTGTCGAGGG
CGGTCACGTTCGACATCTTGTGGCAAGTGATCGATGCCATCAACGAGACG
CCTGCGATTGGAGCATTTGACTTCCCCCTGACCGAGGAAGGCTGCATGCG
AAACTCCAACAGATTCAAGGTGAGACCTAACGGTGGTCAGTACTGCAACT
ACGGTTATTCTTGACGGCACTCTTTCGACCAACCGCGGGATATCGTGTAT
TTTTTCACGTCTGCTGTTTCCAGCCGTTTTAGCGTAGGGAGGACTATCTA
TACGCAGCCCTCGTTGATAAGAGAGAAACAAAAATGTTGTCGCCGGGGGG
TACGAGTTCGGGTTGTCATCGTGGTCAGCATGGTTCGAACCGAAAAATAT
CCCCCGGGTCCCGGGTGGTTCGCCAGCTTTCGGTGTCCTTGGACAAATAA
ATGTTGTTGTCATCCTTTGTGTATGCTGGCCACGTTGGTTCGGCCCCGCA
ACAGCAGTGGCCCGGCAACAGCTTTAGCGATACAAGAGTGTGGAATCAAT
GCAGTCACCTCCGTGGCTCTAAAATGCCCTGATACCTTTGTACCGCTGTA
CGTGACGCAGTATGATTATGATTATGATTATCAAACGGCCCAACTCTCAG
TTTACATGGTATTCCCACCGTTGCTGGCGATGGCGCCGTCGCCGACGACA
TCAACCCACACAACGTACAGCTGAACACTGTTACCATTTTTTGTCAAGCT
ATCTCTCGACTTATTTTATATCCCTTCCCGACACTGCTACTTTCCCGCCC
TCGTGTCTGCCGTCTACAAATGCAGGAGAAGAGCACCGATGGCATTTTCT
CCTGGGTCGTCGCCGCCGTGGATGGTCTGTTCATCAAGGCCAAGGCTCCG
TATGCGAAAGACACCGCCAACGTCCTCGCGTACTACTCTGGCAGCAAGTC
CGCGTACGGCATCAACGTACAAGCGATGTGCACCGCCGACTACCGGTTTT
GCGCGATGTCGGCGATCTCACCAGGCTCTACGAACGACTGGGTAGCATGG
AATCGATCTTCCCTCGCCAAGGCCGTCGCCCGCTTGCCCACCGGATTTCA
CATCATTGGTGACGCCGCCTACCCCATCGGAGAAAAGCTTCTGACTCCGT
ACCCTGGGAGGCTCCTGCCGGCGGGTGAGGACTCGTTCAACTTCCACCTG
AGCCAGCTTCGTGTCAAGATCGAGCAGAGCTTCGGCATCCTGGTTTCGAC
TTGGGGCATTCTGTGGATACCTCTCCGCGTGCAGTTTGGAGGACGCGCGG
ATCTCATCACGGCTCTTTTCCATCTGCACAACTTCCTGCAAGACGAGAAG
GTATCGCCGATCCAGGTTGCAGAGGAGGACTCGCGCAGCGGACGCAACCG
GCCGGCCCTCTGTGCTACGCAGCGCACCTTGCCGGATGGCTGGCAAACGG
AGCAGCCGGCTCCTTCGAGGAGCGGTGAGACCCCGGCCCGAGCGGCTATC
CGCACGGCCCTGGAGTTGAAGAAGCAGTGGAGGCCGGACTACAACCGCCG
GAGGAATTCGTAA
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Coding sequence (CDS) from alignment at Scaffold_373:605947..609009+

>EsuBft1013_10a-0001 ID=EsuBft1013_10a-0001|Name=EsuBft1013_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1227bp|location=Sequence derived from alignment at Scaffold_373:605947..609009+ (Ectocarpus subulatus male Bft15b)
ATGCCTGAGCGTGGGAAGCGTCAAGATCCCAGGGGGATCGCAGCGCAACG
CCGGGAGAAGCGCCGTCGGCGAGCTATCGACGAGGAGGATGTAGCCCATG
ACAAGAGATTCACAGTCTTGGGTCTTGTGAGGGCCGTAGTAGTGGCGGCG
GGCGTCGTGGCAGCAGGAGAGGCTCATCGTGCCCACTGCCCTCAGNAGCT
GTTGCTCAAGCTGTATGTTCTCGGCATCGCCGAGATGCAGCCGCCCACGG
CAGCACTGCGGTCGCCAACCAACGGCGCCATAGCTGTGGAAGTCCGCGTT
GCCGCGGCGTTGAGGATCCTGGCTGGCGGCAGTTACTGGGATGTTGCCCT
CATGTTTGGCTTGTCGAGGGCGGTCACGTTCGACATCTTGTGGCAAGTGA
TCGATGCCATCAACGAGACGCCTGCGATTGGAGCATTTGACTTCCCCCTG
ACCGAGGAAGGCTGCATGCGAAACTCCAACAGATTCAAGGAGAAGAGCAC
CGATGGCATTTTCTCCTGGGTCGTCGCCGCCGTGGATGGTCTGTTCATCA
AGGCCAAGGCTCCGTATGCGAAAGACACCGCCAACGTCCTCGCGTACTAC
TCTGGCAGCAAGTCCGCGTACGGCATCAACGTACAAGCGATGTGCACCGC
CGACTACCGGTTTTGCGCGATGTCGGCGATCTCACCAGGCTCTACGAACG
ACTGGGTAGCATGGAATCGATCTTCCCTCGCCAAGGCCGTCGCCCGCTTG
CCCACCGGATTTCACATCATTGGTGACGCCGCCTACCCCATCGGAGAAAA
GCTTCTGACTCCGTACCCTGGGAGGCTCCTGCCGGCGGGTGAGGACTCGT
TCAACTTCCACCTGAGCCAGCTTCGTGTCAAGATCGAGCAGAGCTTCGGC
ATCCTGGTTTCGACTTGGGGCATTCTGTGGATACCTCTCCGCGTGCAGTT
TGGAGGACGCGCGGATCTCATCACGGCTCTTTTCCATCTGCACAACTTCC
TGCAAGACGAGAAGGTATCGCCGATCCAGGTTGCAGAGGAGGACTCGCGC
AGCGGACGCAACCGGCCGGCCCTCTGTGCTACGCAGCGCACCTTGCCGGA
TGGCTGGCAAACGGAGCAGCCGGCTCCTTCGAGGAGCGGTGAGACCCCGG
CCCGAGCGGCTATCCGCACGGCCCTGGAGTTGAAGAAGCAGTGGAGGCCG
GACTACAACCGCCGGAGGAATTCGTAA
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