Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 4792.ETI53028 |
| ProteomeId | EsuBft1013_10 |
| Protein domains | IPR027806 |
| Protein domains | PTHR22930 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | nuclease harbi1 os:bos taurus gn:harbi1 pe:2 sv:1 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 4776|Peronosporales |
| Length | 1495 |
| Evalue | 1.75e-38 |
| EggNOG OGs | KOG4585@1|root,KOG4585@2759|Eukaryota,3QI3U@4776|Peronosporales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | nuclease activity |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1013_10a-0001 ID=EsuBft1013_10a-0001|Name=EsuBft1013_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1495bp|location=Sequence derived from alignment at Scaffold_373:605947..609009+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGTGTCTTATCAGGCCAAAAAAATACGTACTTAGTATTTGGTTACGAAAC
CGCATTTTCTTGAAATATATGGAGGCGTTCCTCTACGTTTCCGTAAAAAG
AGCGAAGCGTATTTTTTCTGGGCTTGCTCCTTTTACGTTTCGGTGAAAAA
TTTCCCGCTTTTGTGCGACCACCAGAGCAGACACCAGTCACGCGTGCTGT
CTTCATCACACCACACGTAGACAGCACCAACAACACCCCAAAGTGCTTCC
CAAGGCAACTCCACTACCATGCCTGAGCGTGGGAAGCGTCAAGATCCCAG
GGGGATCGCAGCGCAACGCCGGGAGAAGCGCCGTCGGCGAGCTATCGACG
AGGAGGATGTAGCCCATGACAAGAGATTCACAGTCTTGGGTCTTGTGAGG
GCCGTAGTAGTGGCGGCGGGCGTCGTGGCAGCAGGAGAGGCTCATCGTGC
CCACTGCCCTCAGNAGCTGTTGCTCAAGCTGTATGTTCTCGGCATCGCCG
AGATGCAGCCGCCCACGGCAGCACTGCGGTCGCCAACCAACGGCGCCATA
GCTGTGGAAGTCCGCGTTGCCGCGGCGTTGAGGATCCTGGCTGGCGGCAG
TTACTGGGATGTTGCCCTCATGTTTGGCTTGTCGAGGGCGGTCACGTTCG
ACATCTTGTGGCAAGTGATCGATGCCATCAACGAGACGCCTGCGATTGGA
GCATTTGACTTCCCCCTGACCGAGGAAGGCTGCATGCGAAACTCCAACAG
ATTCAAGGAGAAGAGCACCGATGGCATTTTCTCCTGGGTCGTCGCCGCCG
TGGATGGTCTGTTCATCAAGGCCAAGGCTCCGTATGCGAAAGACACCGCC
AACGTCCTCGCGTACTACTCTGGCAGCAAGTCCGCGTACGGCATCAACGT
ACAAGCGATGTGCACCGCCGACTACCGGTTTTGCGCGATGTCGGCGATCT
CACCAGGCTCTACGAACGACTGGGTAGCATGGAATCGATCTTCCCTCGCC
AAGGCCGTCGCCCGCTTGCCCACCGGATTTCACATCATTGGTGACGCCGC
CTACCCCATCGGAGAAAAGCTTCTGACTCCGTACCCTGGGAGGCTCCTGC
CGGCGGGTGAGGACTCGTTCAACTTCCACCTGAGCCAGCTTCGTGTCAAG
ATCGAGCAGAGCTTCGGCATCCTGGTTTCGACTTGGGGCATTCTGTGGAT
ACCTCTCCGCGTGCAGTTTGGAGGACGCGCGGATCTCATCACGGCTCTTT
TCCATCTGCACAACTTCCTGCAAGACGAGAAGGTATCGCCGATCCAGGTT
GCAGAGGAGGACTCGCGCAGCGGACGCAACCGGCCGGCCCTCTGTGCTAC
GCAGCGCACCTTGCCGGATGGCTGGCAAACGGAGCAGCCGGCTCCTTCGA
GGAGCGGTGAGACCCCGGCCCGAGCGGCTATCCGCACGGCCCTGGAGTTG
AAGAAGCAGTGGAGGCCGGACTACAACCGCCGGAGGAATTCGTAA back to topprotein sequence of EsuBft1013_10a-0001 >EsuBft1013_10 ID=EsuBft1013_10|Name=EsuBft1013_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=408bp
MPERGKRQDPRGIAAQRREKRRRRAIDEEDVAHDKRFTVLGLVRAVVVAA
GVVAAGEAHRAHCPQXLLLKLYVLGIAEMQPPTAALRSPTNGAIAVEVRV
AAALRILAGGSYWDVALMFGLSRAVTFDILWQVIDAINETPAIGAFDFPL
TEEGCMRNSNRFKEKSTDGIFSWVVAAVDGLFIKAKAPYAKDTANVLAYY
SGSKSAYGINVQAMCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARL
PTGFHIIGDAAYPIGEKLLTPYPGRLLPAGEDSFNFHLSQLRVKIEQSFG
ILVSTWGILWIPLRVQFGGRADLITALFHLHNFLQDEKVSPIQVAEEDSR
SGRNRPALCATQRTLPDGWQTEQPAPSRSGETPARAAIRTALELKKQWRP
DYNRRRNS back to topmRNA from alignment at Scaffold_373:605947..609009+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1013_10a-0001 ID=EsuBft1013_10a-0001|Name=EsuBft1013_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3063bp|location=Sequence derived from alignment at Scaffold_373:605947..609009+ (Ectocarpus subulatus male Bft15b)
TGTGTCTTATCAGGCCAAAAAAATACGTACTTAGTATTTGGTTACGAAAC
CGCATTTTCTTGAAATATATGGAGGCGTTCCTCTACGTTTCCGTAAAAAG
AGCGAAGCGTATTTTTTCTGGGCTTGCTCCTTTTACGTTTCGGTGAAAAA
TTTCCCGCTTTTGTGCGACCACCAGAGCAGACACCAGTCACGCGTGCTGT
CTTCATCACACCACACGTAGACAGCACCAACAACACCCCAAAGTGCTTCC
CAAGGCAACTCCACTACCATGCCTGAGCGTGGGAAGCGTCAAGATCCCAG
GGGGATCGCAGCGCAACGCCGGGAGAAGCGCCGTCGGCGAGCTATCGACG
AGGAGGATGTAGCCCATGACAAGAGATTCACAGTCTTGGGTCTTGTGAGG
GCCGTAGTAGTGGCGGCGGGCGTCGTGGCAGCAGGAGAGGCTCATCGTGC
CCACTGCCCTCAGNAGCTGTTGCTCAAGCTGTATGTTCTCGGCATCGCCG
AGGTAGTCAGCATCGCGAGAAATCAGGCCGAAACCAGCACGGATCGCTTT
TTGCGCCCGTGAGAAGGCGTGATGTGGAGCATGGCGGTTCTGATGAGCTC
ATCTCACAGCTGGGGCGAAGGGGTTTCGCAGGATAATTTTGGTTATGTGA
TACACCCGATGGTTCTGAAGAAAAACGCCAATTAATTCTCATTTTTGGAT
ACGTTCCCATTTTTCCCGCAAGTCTGTTCTTCGCTGGAAGTCAACGCTTT
CTTTGGCGGTGAATGTTGATGTGTAGATGCAGCCGCCCACGGCAGGTATG
CGTGATGAGGGTTCTTCTGGTGTATATGTAGAAAGCAACGGGGAAGAGCA
CAAGTCTAAAACATGTGCTGTACATAGACTAGTCTACACTGCTGTATGTT
CCTGTTGCCTTTTTTTAAAAAGCAACTCGCTCGTCGAACATGCGGCAGCA
GGGTACGTACAGCGCAGCAGCACTTTTGTACGATATGCATGCATCAGTAG
ACACATGCTTTGTACAGCAGCGGTCATTGTATGGGTTAAAGGCGAAGGTA
CTATTTGTGACGCTCACTACTACTGTGCAGCAGTATTCACAGGGCGTACA
GTACACGCCGGCCCCACTAAACAAATACAGCCTCGTCGGGAGCCGATACA
GATTGTCGTATCCCGCAATGACACAACAGCTATCGACACGTGCTCATCAT
TTGCAAAATGCGTATGTAGGTGATGAACACAGAGCCGCCTCCGTACCGTA
GTACATAGGTGGATTGGGCCGGCAATTTGACGAGTTTGCGGAGAACATGC
GTCCCCCGTCGTAGGTTGCTAAACTAGGTGCTGGCGATTGCAAACATGCC
CCCCTTGACACTCGTACTTCTGTCCTGAACGACACACGCTCATCCTGCAA
ACATTATCTGCGCGTCGCTCGGAAACCCCACAGCACTGCGGTCGCCAACC
AACGGCGCCATAGCTGTGGAAGTCCGCGTTGCCGCGGCGTTGAGGATCCT
GGCTGGCGGCAGTTACTGGGATGTTGCCCTCATGTTTGGCTTGTCGAGGG
CGGTCACGTTCGACATCTTGTGGCAAGTGATCGATGCCATCAACGAGACG
CCTGCGATTGGAGCATTTGACTTCCCCCTGACCGAGGAAGGCTGCATGCG
AAACTCCAACAGATTCAAGGTGAGACCTAACGGTGGTCAGTACTGCAACT
ACGGTTATTCTTGACGGCACTCTTTCGACCAACCGCGGGATATCGTGTAT
TTTTTCACGTCTGCTGTTTCCAGCCGTTTTAGCGTAGGGAGGACTATCTA
TACGCAGCCCTCGTTGATAAGAGAGAAACAAAAATGTTGTCGCCGGGGGG
TACGAGTTCGGGTTGTCATCGTGGTCAGCATGGTTCGAACCGAAAAATAT
CCCCCGGGTCCCGGGTGGTTCGCCAGCTTTCGGTGTCCTTGGACAAATAA
ATGTTGTTGTCATCCTTTGTGTATGCTGGCCACGTTGGTTCGGCCCCGCA
ACAGCAGTGGCCCGGCAACAGCTTTAGCGATACAAGAGTGTGGAATCAAT
GCAGTCACCTCCGTGGCTCTAAAATGCCCTGATACCTTTGTACCGCTGTA
CGTGACGCAGTATGATTATGATTATGATTATCAAACGGCCCAACTCTCAG
TTTACATGGTATTCCCACCGTTGCTGGCGATGGCGCCGTCGCCGACGACA
TCAACCCACACAACGTACAGCTGAACACTGTTACCATTTTTTGTCAAGCT
ATCTCTCGACTTATTTTATATCCCTTCCCGACACTGCTACTTTCCCGCCC
TCGTGTCTGCCGTCTACAAATGCAGGAGAAGAGCACCGATGGCATTTTCT
CCTGGGTCGTCGCCGCCGTGGATGGTCTGTTCATCAAGGCCAAGGCTCCG
TATGCGAAAGACACCGCCAACGTCCTCGCGTACTACTCTGGCAGCAAGTC
CGCGTACGGCATCAACGTACAAGCGATGTGCACCGCCGACTACCGGTTTT
GCGCGATGTCGGCGATCTCACCAGGCTCTACGAACGACTGGGTAGCATGG
AATCGATCTTCCCTCGCCAAGGCCGTCGCCCGCTTGCCCACCGGATTTCA
CATCATTGGTGACGCCGCCTACCCCATCGGAGAAAAGCTTCTGACTCCGT
ACCCTGGGAGGCTCCTGCCGGCGGGTGAGGACTCGTTCAACTTCCACCTG
AGCCAGCTTCGTGTCAAGATCGAGCAGAGCTTCGGCATCCTGGTTTCGAC
TTGGGGCATTCTGTGGATACCTCTCCGCGTGCAGTTTGGAGGACGCGCGG
ATCTCATCACGGCTCTTTTCCATCTGCACAACTTCCTGCAAGACGAGAAG
GTATCGCCGATCCAGGTTGCAGAGGAGGACTCGCGCAGCGGACGCAACCG
GCCGGCCCTCTGTGCTACGCAGCGCACCTTGCCGGATGGCTGGCAAACGG
AGCAGCCGGCTCCTTCGAGGAGCGGTGAGACCCCGGCCCGAGCGGCTATC
CGCACGGCCCTGGAGTTGAAGAAGCAGTGGAGGCCGGACTACAACCGCCG
GAGGAATTCGTAA back to topCoding sequence (CDS) from alignment at Scaffold_373:605947..609009+ >EsuBft1013_10a-0001 ID=EsuBft1013_10a-0001|Name=EsuBft1013_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1227bp|location=Sequence derived from alignment at Scaffold_373:605947..609009+ (Ectocarpus subulatus male Bft15b)
ATGCCTGAGCGTGGGAAGCGTCAAGATCCCAGGGGGATCGCAGCGCAACG
CCGGGAGAAGCGCCGTCGGCGAGCTATCGACGAGGAGGATGTAGCCCATG
ACAAGAGATTCACAGTCTTGGGTCTTGTGAGGGCCGTAGTAGTGGCGGCG
GGCGTCGTGGCAGCAGGAGAGGCTCATCGTGCCCACTGCCCTCAGNAGCT
GTTGCTCAAGCTGTATGTTCTCGGCATCGCCGAGATGCAGCCGCCCACGG
CAGCACTGCGGTCGCCAACCAACGGCGCCATAGCTGTGGAAGTCCGCGTT
GCCGCGGCGTTGAGGATCCTGGCTGGCGGCAGTTACTGGGATGTTGCCCT
CATGTTTGGCTTGTCGAGGGCGGTCACGTTCGACATCTTGTGGCAAGTGA
TCGATGCCATCAACGAGACGCCTGCGATTGGAGCATTTGACTTCCCCCTG
ACCGAGGAAGGCTGCATGCGAAACTCCAACAGATTCAAGGAGAAGAGCAC
CGATGGCATTTTCTCCTGGGTCGTCGCCGCCGTGGATGGTCTGTTCATCA
AGGCCAAGGCTCCGTATGCGAAAGACACCGCCAACGTCCTCGCGTACTAC
TCTGGCAGCAAGTCCGCGTACGGCATCAACGTACAAGCGATGTGCACCGC
CGACTACCGGTTTTGCGCGATGTCGGCGATCTCACCAGGCTCTACGAACG
ACTGGGTAGCATGGAATCGATCTTCCCTCGCCAAGGCCGTCGCCCGCTTG
CCCACCGGATTTCACATCATTGGTGACGCCGCCTACCCCATCGGAGAAAA
GCTTCTGACTCCGTACCCTGGGAGGCTCCTGCCGGCGGGTGAGGACTCGT
TCAACTTCCACCTGAGCCAGCTTCGTGTCAAGATCGAGCAGAGCTTCGGC
ATCCTGGTTTCGACTTGGGGCATTCTGTGGATACCTCTCCGCGTGCAGTT
TGGAGGACGCGCGGATCTCATCACGGCTCTTTTCCATCTGCACAACTTCC
TGCAAGACGAGAAGGTATCGCCGATCCAGGTTGCAGAGGAGGACTCGCGC
AGCGGACGCAACCGGCCGGCCCTCTGTGCTACGCAGCGCACCTTGCCGGA
TGGCTGGCAAACGGAGCAGCCGGCTCCTTCGAGGAGCGGTGAGACCCCGG
CCCGAGCGGCTATCCGCACGGCCCTGGAGTTGAAGAAGCAGTGGAGGCCG
GACTACAACCGCCGGAGGAATTCGTAA back to top
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