EsuBft457_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft457_6a-0001
Unique NameEsuBft457_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_373contigScaffold_373:377406..379334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft457_6
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length55
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-22_003480.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft457_6aEsuBft457_6aEctocarpus subulatus male Bft15bgeneScaffold_373 377406..379334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft457_6a-0001EsuBft457_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_373 377406..379315 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft457_6a-0001-exonagat-exon-95609Ectocarpus subulatus male Bft15bexonScaffold_373 377406..377565 -
EsuBft457_6a-0001-exonEsuBft457_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_373 378059..378277 -
EsuBft457_6a-0001-exonagat-exon-95611Ectocarpus subulatus male Bft15bexonScaffold_373 378733..378878 -
EsuBft457_6a-0001-exonagat-exon-95610Ectocarpus subulatus male Bft15bexonScaffold_373 379307..379334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft457_6a-0001-cdsEsuBft457_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_373 377406..377565 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft457_6a-0001-exonagat-five_prime_utr-10372Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_373 379316..379334 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft457_6a-0001 ID=EsuBft457_6a-0001|Name=EsuBft457_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=553bp|location=Sequence derived from alignment at Scaffold_373:377406..379334- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTTGGGGCTGAAATCGCAATGCTGCGGGGATCAGGCGAGGAAGATGAAG
AAGGAAACCCTATTCTTCCAGAAATAGACGACAGATTTCTCACAGTGGGG
CAAAGGCTCCGGCGCCTGCGTGACGCCAGGGATAATCTTGAACGCGAGAA
GCAGAGGGCGCATTTGGAGTACAGTCGACAGGTGAAAAGCAATCTCCGAG
AACGAAAACGTTTCGTTCTGGCGGAGAAACGGGCCGGACGCATTGCCAAA
TCTATGGACACCAAACAGCTCGTGGAGGCATTGAAAGAGAGGGGTTATGC
GACCAAGGGATCAGAACAGTTGGACCAGCTTAGGCGTGTATTCATTGAGG
GCATTCAGCCAGAGATTCGCGTCCGCCTTCACGCTACTTCAAGATGGACT
AAGAGCAGAAACAAGCACCGAGAGAGGACGGACACCGTTGAAGTCGGCGA
GATCGTTGCGAGGAGGCAACAACTCACGTCGTCAAAGCGGGTCACTCCAT
TTTCTCCCTCGCCAATCACCAGGCTCAACGTGCGACACGCCGCCACCGTA
TGA
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protein sequence of EsuBft457_6a-0001

>EsuBft457_6 ID=EsuBft457_6|Name=EsuBft457_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=177bp
MLRGSGEEDEEGNPILPEIDDRFLTVGQRLRRLRDARDNLEREKQRAHLE
YSRQVKSNLRERKRFVLAEKRAGRIAKSMDTKQLVEALKERGYATKGSEQ
LDQLRRVFIEGIQPEIRVRLHATSRWTKSRNKHRERTDTVEVGEIVARRQ
QLTSSKRVTPFSPSPITRLNVRHAATV
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mRNA from alignment at Scaffold_373:377406..379334-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft457_6a-0001 ID=EsuBft457_6a-0001|Name=EsuBft457_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1929bp|location=Sequence derived from alignment at Scaffold_373:377406..379334- (Ectocarpus subulatus male Bft15b)
GCTTGGGGCTGAAATCGCAATGCTGCGGGTACGATTTCGATCGAAGTTTG
CGCTGTTCAAGACAAGGCCGACTGTGCGGTAGCATCACTTTTGGTTATGA
CGAAACGTTCACCATACTCTGATTGTTCATCACTGCCAGCAAAATTCATC
TCACAACAGCTTACCAGACGAACACATCCGGCTCGGGCAACAAACCTTAG
GCCTTCTTCCGCTACGTATGGGACATTCCGAGTTCGACATGGCACTCAAG
GTACGAAGGGTTACCGCATCCGGACGAAAACCCAGACTCCAGCCCAGGCT
GTGGGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGGGCCCCCCCCCCCCCCGCCATTGCCGCCGCCCGTTGT
GTCCAGGGATCAGGCGAGGAAGATGAAGAAGGAAACCCTATTCTTCCAGA
AATAGACGACAGATTTCTCACAGTGGGGCAAAGGCTCCGGCGCCTGCGTG
ACGCCAGGGATAATCTTGAACGCGAGAAGCAGAGGGCGCATTTGGAGTAC
AGGTCCGATGAAACCGGCTTCCCTCCGTTGTAACCACCTGCATGGCCAGG
ACGATTTACGACTAGACCAGCAGTACTCATCAGCTGGCTAATATGTAGGT
GTATCCGAGAGCTGAGTGACACGGGGCCAGGAGGCTAAACTTCGGTATGA
TTCGCCGTCGTCATCGATTGTATCGCCCACGATAGCGGGCTTGTACGGAC
GGTAAGCGCACAGCAGCACCAAAATCAGCATGGATAACAGGAACAAAAAC
ATCGCTCACGGTACTCTAGACGCCACTGAACCGTTGTGTTTTTTCCAGCA
TCAGATTGATGATTCGTAGTTCGACTTTTCCATCCACACGGTGCGGATAT
TATAAGGCACCGAGCGGCGACCGTTTTTGGAATGTGAAGGCAACCACATC
AACAACAGCAGTACCTCTCTAGCCGAAGAGCTCTGAACCATGCATCTCCT
TTTGCAGTCGACAGGTGAAAAGCAATCTCCGAGAACGAAAACGTTTCGTT
CTGGCGGAGAAACGGGCCGGACGCATTGCCAAATCTATGGACACCAAACA
GCTCGTGGAGGCATTGAAAGAGAGGGGTTATGCGACCAAGGGATCAGAAC
AGTTGGACCAGCTTAGGCGTGTATTCATTGAGGGCATTCAGCCAGAGATT
CGCGTCCGCCTTCACGCTACTTCAAGGTGAGCGCGAAACGGACCTGCGCC
CCACTAACGGAGATGCAGGGCGGCGAATTTCAGTGTGTGCAACAACAAAT
CCGAAGAACAGCGGTTTCACATGACGTTAACTCCCTTGTGGGTTTGGGGC
ATTCGATACGCGATTGTGTCGTGTTCAACATGTGAACAGGGCGTGTGTGC
GAAAAGCTGTTAATACAAACTCCATATGGCAACGCGATGGTGCGTCTGTC
AGGAAGGTACCCCCTGCAGGGTAGAGCGTAAGATGTGAACACAGCAGTTG
CACAGCTACAATAATAGCGCTACCTACAATATGGAGTTTGTCGACCTTCC
CGTGTTTTACCTTGTTGTGTATCAACACCCGCGAAAACTCTGACGCCAGA
TCTCAGTCGATGTACATCAGGGCAACCTCCAGTCGGGTTTGAGGTCCTTT
GCACGCGGACATTTCGCAGACTCCACTCCCCCGCTACCAACATTTTCCCC
TCTGACGCCCATTCCCCAGATGGACTAAGAGCAGAAACAAGCACCGAGAG
AGGACGGACACCGTTGAAGTCGGCGAGATCGTTGCGAGGAGGCAACAACT
CACGTCGTCAAAGCGGGTCACTCCATTTTCTCCCTCGCCAATCACCAGGC
TCAACGTGCGACACGCCGCCACCGTATGA
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Coding sequence (CDS) from alignment at Scaffold_373:377406..379334-

>EsuBft457_6a-0001 ID=EsuBft457_6a-0001|Name=EsuBft457_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=534bp|location=Sequence derived from alignment at Scaffold_373:377406..379334- (Ectocarpus subulatus male Bft15b)
ATGCTGCGGGGATCAGGCGAGGAAGATGAAGAAGGAAACCCTATTCTTCC
AGAAATAGACGACAGATTTCTCACAGTGGGGCAAAGGCTCCGGCGCCTGC
GTGACGCCAGGGATAATCTTGAACGCGAGAAGCAGAGGGCGCATTTGGAG
TACAGTCGACAGGTGAAAAGCAATCTCCGAGAACGAAAACGTTTCGTTCT
GGCGGAGAAACGGGCCGGACGCATTGCCAAATCTATGGACACCAAACAGC
TCGTGGAGGCATTGAAAGAGAGGGGTTATGCGACCAAGGGATCAGAACAG
TTGGACCAGCTTAGGCGTGTATTCATTGAGGGCATTCAGCCAGAGATTCG
CGTCCGCCTTCACGCTACTTCAAGATGGACTAAGAGCAGAAACAAGCACC
GAGAGAGGACGGACACCGTTGAAGTCGGCGAGATCGTTGCGAGGAGGCAA
CAACTCACGTCGTCAAAGCGGGTCACTCCATTTTCTCCCTCGCCAATCAC
CAGGCTCAACGTGCGACACGCCGCCACCGTATGA
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