Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft457_6 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Length | 55 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical leucine rich repeat protein |
| Ec32 ortholog | Ec-22_003480.1 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft457_6a-0001 ID=EsuBft457_6a-0001|Name=EsuBft457_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=553bp|location=Sequence derived from alignment at Scaffold_373:377406..379334- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCTTGGGGCTGAAATCGCAATGCTGCGGGGATCAGGCGAGGAAGATGAAG
AAGGAAACCCTATTCTTCCAGAAATAGACGACAGATTTCTCACAGTGGGG
CAAAGGCTCCGGCGCCTGCGTGACGCCAGGGATAATCTTGAACGCGAGAA
GCAGAGGGCGCATTTGGAGTACAGTCGACAGGTGAAAAGCAATCTCCGAG
AACGAAAACGTTTCGTTCTGGCGGAGAAACGGGCCGGACGCATTGCCAAA
TCTATGGACACCAAACAGCTCGTGGAGGCATTGAAAGAGAGGGGTTATGC
GACCAAGGGATCAGAACAGTTGGACCAGCTTAGGCGTGTATTCATTGAGG
GCATTCAGCCAGAGATTCGCGTCCGCCTTCACGCTACTTCAAGATGGACT
AAGAGCAGAAACAAGCACCGAGAGAGGACGGACACCGTTGAAGTCGGCGA
GATCGTTGCGAGGAGGCAACAACTCACGTCGTCAAAGCGGGTCACTCCAT
TTTCTCCCTCGCCAATCACCAGGCTCAACGTGCGACACGCCGCCACCGTA
TGA back to topprotein sequence of EsuBft457_6a-0001 >EsuBft457_6 ID=EsuBft457_6|Name=EsuBft457_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=177bp
MLRGSGEEDEEGNPILPEIDDRFLTVGQRLRRLRDARDNLEREKQRAHLE
YSRQVKSNLRERKRFVLAEKRAGRIAKSMDTKQLVEALKERGYATKGSEQ
LDQLRRVFIEGIQPEIRVRLHATSRWTKSRNKHRERTDTVEVGEIVARRQ
QLTSSKRVTPFSPSPITRLNVRHAATV back to topmRNA from alignment at Scaffold_373:377406..379334- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft457_6a-0001 ID=EsuBft457_6a-0001|Name=EsuBft457_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1929bp|location=Sequence derived from alignment at Scaffold_373:377406..379334- (Ectocarpus subulatus male Bft15b)
GCTTGGGGCTGAAATCGCAATGCTGCGGGTACGATTTCGATCGAAGTTTG
CGCTGTTCAAGACAAGGCCGACTGTGCGGTAGCATCACTTTTGGTTATGA
CGAAACGTTCACCATACTCTGATTGTTCATCACTGCCAGCAAAATTCATC
TCACAACAGCTTACCAGACGAACACATCCGGCTCGGGCAACAAACCTTAG
GCCTTCTTCCGCTACGTATGGGACATTCCGAGTTCGACATGGCACTCAAG
GTACGAAGGGTTACCGCATCCGGACGAAAACCCAGACTCCAGCCCAGGCT
GTGGGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGGGCCCCCCCCCCCCCCGCCATTGCCGCCGCCCGTTGT
GTCCAGGGATCAGGCGAGGAAGATGAAGAAGGAAACCCTATTCTTCCAGA
AATAGACGACAGATTTCTCACAGTGGGGCAAAGGCTCCGGCGCCTGCGTG
ACGCCAGGGATAATCTTGAACGCGAGAAGCAGAGGGCGCATTTGGAGTAC
AGGTCCGATGAAACCGGCTTCCCTCCGTTGTAACCACCTGCATGGCCAGG
ACGATTTACGACTAGACCAGCAGTACTCATCAGCTGGCTAATATGTAGGT
GTATCCGAGAGCTGAGTGACACGGGGCCAGGAGGCTAAACTTCGGTATGA
TTCGCCGTCGTCATCGATTGTATCGCCCACGATAGCGGGCTTGTACGGAC
GGTAAGCGCACAGCAGCACCAAAATCAGCATGGATAACAGGAACAAAAAC
ATCGCTCACGGTACTCTAGACGCCACTGAACCGTTGTGTTTTTTCCAGCA
TCAGATTGATGATTCGTAGTTCGACTTTTCCATCCACACGGTGCGGATAT
TATAAGGCACCGAGCGGCGACCGTTTTTGGAATGTGAAGGCAACCACATC
AACAACAGCAGTACCTCTCTAGCCGAAGAGCTCTGAACCATGCATCTCCT
TTTGCAGTCGACAGGTGAAAAGCAATCTCCGAGAACGAAAACGTTTCGTT
CTGGCGGAGAAACGGGCCGGACGCATTGCCAAATCTATGGACACCAAACA
GCTCGTGGAGGCATTGAAAGAGAGGGGTTATGCGACCAAGGGATCAGAAC
AGTTGGACCAGCTTAGGCGTGTATTCATTGAGGGCATTCAGCCAGAGATT
CGCGTCCGCCTTCACGCTACTTCAAGGTGAGCGCGAAACGGACCTGCGCC
CCACTAACGGAGATGCAGGGCGGCGAATTTCAGTGTGTGCAACAACAAAT
CCGAAGAACAGCGGTTTCACATGACGTTAACTCCCTTGTGGGTTTGGGGC
ATTCGATACGCGATTGTGTCGTGTTCAACATGTGAACAGGGCGTGTGTGC
GAAAAGCTGTTAATACAAACTCCATATGGCAACGCGATGGTGCGTCTGTC
AGGAAGGTACCCCCTGCAGGGTAGAGCGTAAGATGTGAACACAGCAGTTG
CACAGCTACAATAATAGCGCTACCTACAATATGGAGTTTGTCGACCTTCC
CGTGTTTTACCTTGTTGTGTATCAACACCCGCGAAAACTCTGACGCCAGA
TCTCAGTCGATGTACATCAGGGCAACCTCCAGTCGGGTTTGAGGTCCTTT
GCACGCGGACATTTCGCAGACTCCACTCCCCCGCTACCAACATTTTCCCC
TCTGACGCCCATTCCCCAGATGGACTAAGAGCAGAAACAAGCACCGAGAG
AGGACGGACACCGTTGAAGTCGGCGAGATCGTTGCGAGGAGGCAACAACT
CACGTCGTCAAAGCGGGTCACTCCATTTTCTCCCTCGCCAATCACCAGGC
TCAACGTGCGACACGCCGCCACCGTATGA back to topCoding sequence (CDS) from alignment at Scaffold_373:377406..379334- >EsuBft457_6a-0001 ID=EsuBft457_6a-0001|Name=EsuBft457_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=534bp|location=Sequence derived from alignment at Scaffold_373:377406..379334- (Ectocarpus subulatus male Bft15b)
ATGCTGCGGGGATCAGGCGAGGAAGATGAAGAAGGAAACCCTATTCTTCC
AGAAATAGACGACAGATTTCTCACAGTGGGGCAAAGGCTCCGGCGCCTGC
GTGACGCCAGGGATAATCTTGAACGCGAGAAGCAGAGGGCGCATTTGGAG
TACAGTCGACAGGTGAAAAGCAATCTCCGAGAACGAAAACGTTTCGTTCT
GGCGGAGAAACGGGCCGGACGCATTGCCAAATCTATGGACACCAAACAGC
TCGTGGAGGCATTGAAAGAGAGGGGTTATGCGACCAAGGGATCAGAACAG
TTGGACCAGCTTAGGCGTGTATTCATTGAGGGCATTCAGCCAGAGATTCG
CGTCCGCCTTCACGCTACTTCAAGATGGACTAAGAGCAGAAACAAGCACC
GAGAGAGGACGGACACCGTTGAAGTCGGCGAGATCGTTGCGAGGAGGCAA
CAACTCACGTCGTCAAAGCGGGTCACTCCATTTTCTCCCTCGCCAATCAC
CAGGCTCAACGTGCGACACGCCGCCACCGTATGA back to top
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