EsuBft457_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft457_2a-0001
Unique NameEsuBft457_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_373contigScaffold_373:356744..357524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FZ45
ProteomeIdEsuBft457_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length51
Evalue4.79e-97
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
DescriptionDDE superfamily endonuclease
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft457_2aEsuBft457_2aEctocarpus subulatus male Bft15bgeneScaffold_373 356744..357524 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft457_2a-0001-exonEsuBft457_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_373 356744..357139 -
EsuBft457_2a-0001-exonagat-exon-95605Ectocarpus subulatus male Bft15bexonScaffold_373 357407..357524 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft457_2a-0001-cdsEsuBft457_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_373 356744..357139 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft457_2a-0001-exonagat-five_prime_utr-10371Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_373 357518..357524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft457_2a-0001EsuBft457_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_373 356744..357517 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft457_2a-0001 ID=EsuBft457_2a-0001|Name=EsuBft457_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=514bp|location=Sequence derived from alignment at Scaffold_373:356744..357524- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTACGAGATGGCCCGTCTGGAACTCGACGACATGCCCACGAGTATCGCAC
GTAGGGAAGTGACAGCATTCTTCAGCCCACAGGACTGGGTCAACTTTCTA
CGTTTCACGCAATCGCAAGTTATGCTGATGCTGGATCTGCTGTTGATCCC
CGCGTTCATCCGCACTGACTGCGGGTTCGTGGTAAGCGGACGGGAGGCTC
TGTGCGTGCTCCTGTATCGGCTCGCTTTCCCATGCCGCCTGAAGGACATG
CGCTTGGTTTTCGGGCTGAGCGAATCGTGTATCTGCGAAGCCTTCAACTG
GATGCTGCATTTTCTAGACTTCAGGTGGGGGTATCTGCTGTCCCTCGACG
TGGCACGCCTGCAGCCGCACCTGATCGAGTTTGCGGAAGCAATCTTCAAC
TCCGGCTGTCCTCCCACTCACTGTTGGGGATCTATCGATGGCACCGTGCG
GGCATTGCAAGGTGAAGTCANCTGTGCGTGCTCCTGTATCGGCTCGCTTT
CCCATGCCGCCTGA
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protein sequence of EsuBft457_2a-0001

>EsuBft457_2 ID=EsuBft457_2|Name=EsuBft457_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=168bp
MARLELDDMPTSIARREVTAFFSPQDWVNFLRFTQSQVMLMLDLLLIPAF
IRTDCGFVVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCICEAFNWML
HFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPPTHCWGSIDGTVRAL
QGEVXCACSCIGSLSHAA
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mRNA from alignment at Scaffold_373:356744..357524-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft457_2a-0001 ID=EsuBft457_2a-0001|Name=EsuBft457_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=781bp|location=Sequence derived from alignment at Scaffold_373:356744..357524- (Ectocarpus subulatus male Bft15b)
CTACGAGATGGCCCGTCTGGAACTCGACGACATGCCCACGAGTATCGCAC
GTAGGGAAGTGACAGCATTCTTCAGCCCACAGGACTGGGTCAACTTTCTA
CGTTTCACGCAATCGCAAGTGAGTACATGTCGCAGCTAAATATTATATCG
TTGCTGTGGCTTGGACATGTGTACTCCGGCTATCAGCAGCAGCAGTGTGT
GTGTCAGTGTGTCGTTCGACAGCCGCAGCAGTATGTCAGCATCCCGTGGG
TCGCGAGGGGTTAGCCGTTCTGGGTGCGTCAAGCCACCGTGCTATGTTAG
ACCCACAAGCCAACGGAGAGGTGTGCACTGGAATAACAAGTAACACATCG
TTCTTTGCTTTCCTGTGTGGTGTCACGTGATGCAGGTTATGCTGATGCTG
GATCTGCTGTTGATCCCCGCGTTCATCCGCACTGACTGCGGGTTCGTGGT
AAGCGGACGGGAGGCTCTGTGCGTGCTCCTGTATCGGCTCGCTTTCCCAT
GCCGCCTGAAGGACATGCGCTTGGTTTTCGGGCTGAGCGAATCGTGTATC
TGCGAAGCCTTCAACTGGATGCTGCATTTTCTAGACTTCAGGTGGGGGTA
TCTGCTGTCCCTCGACGTGGCACGCCTGCAGCCGCACCTGATCGAGTTTG
CGGAAGCAATCTTCAACTCCGGCTGTCCTCCCACTCACTGTTGGGGATCT
ATCGATGGCACCGTGCGGGCATTGCAAGGTGAAGTCANCTGTGCGTGCTC
CTGTATCGGCTCGCTTTCCCATGCCGCCTGA
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Coding sequence (CDS) from alignment at Scaffold_373:356744..357524-

>EsuBft457_2a-0001 ID=EsuBft457_2a-0001|Name=EsuBft457_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=507bp|location=Sequence derived from alignment at Scaffold_373:356744..357524- (Ectocarpus subulatus male Bft15b)
ATGGCCCGTCTGGAACTCGACGACATGCCCACGAGTATCGCACGTAGGGA
AGTGACAGCATTCTTCAGCCCACAGGACTGGGTCAACTTTCTACGTTTCA
CGCAATCGCAAGTTATGCTGATGCTGGATCTGCTGTTGATCCCCGCGTTC
ATCCGCACTGACTGCGGGTTCGTGGTAAGCGGACGGGAGGCTCTGTGCGT
GCTCCTGTATCGGCTCGCTTTCCCATGCCGCCTGAAGGACATGCGCTTGG
TTTTCGGGCTGAGCGAATCGTGTATCTGCGAAGCCTTCAACTGGATGCTG
CATTTTCTAGACTTCAGGTGGGGGTATCTGCTGTCCCTCGACGTGGCACG
CCTGCAGCCGCACCTGATCGAGTTTGCGGAAGCAATCTTCAACTCCGGCT
GTCCTCCCACTCACTGTTGGGGATCTATCGATGGCACCGTGCGGGCATTG
CAAGGTGAAGTCANCTGTGCGTGCTCCTGTATCGGCTCGCTTTCCCATGC
CGCCTGA
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