EsuBft446_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
ProteomeId	EsuBft446_2
Protein domains	TMhelix
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SignalP-TM
Protein domains	SignalP-noTM
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_C_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	223
Hectar predicted targeting category	signal peptide
Date last modified	2016-06-14
Date creation	2016-06-14

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_373:269019..271253-
coding sequence from alignment at Scaffold_373:269019..271253-

spliced messenger RNA

>EsuBft446_2a-0001 ID=EsuBft446_2a-0001|Name=EsuBft446_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2235bp|location=Sequence derived from alignment at Scaffold_373:269019..271253- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAGCATGGGGGAGGCTAAATTATCCTTCGGATTAAAAACAGAAACAGCAG
CAACAGAAGACAACTGCACCCGTCTACCAAGGCTATTACCTAGTCCTCGA
GTTCGTTTAGGAGTACTTTCACCAGTATCCTCCTTGTTTTCGCTACCATC
ATTTTTATCCTCATTTCGACAAGAAGAATCTCTGGGCAGTTCTTCCCTAG
CCCTACGTTTCTTGTTGTGGGGAAGGTCATCTGGCTCAAACCCTTTGCTC
TCTTCCACTCCTCCATGTTTTCGTGCTCCGTCGTCGTCTTCGTCCTCCTT
TCTTTCCTTTCCCTTTCCATCGCCTTCGTCACTCCCAAAAGAATTACCCT
CACTACTATCGTTGTCGCAGAGGTCCCAACCGATTGGCCCTGGTGGAAGT
TGGTCGATCAGTAGCCCATGACGTTTGAGCACATCGAGAGTTCGCATCGA
CAGAAAACGAGCTAGCTCGAAGGTAAACCGTCTCCGAATCCTGTTAGTAT
GAAAAGCTTTCAGGCGAACTAAGGCCCTCTCGTCGTCAAAATTTTCCCGG
CAAAAAGCTTCGTGCGCCAAGTGGTTGGCGATAGCAACGATGAGTCGATT
GGTGCCTTTGCCAAGACCACCATTCGTTGAAAAAGCAGCAGTAAGGAGGG
TAGATCTAGACGGGTTGAAAGTTCCCGCATAGTGATTTGCCTTACTTGCA
GCTCGATCTTCGAGGGCTGATCCTGGCTTAAGGATCGACTTGTCGATGCT
TCGACCTGCTGATGGGTTGACGATTGTTACGTCGATCAGAATGGACTTGG
TGCAGAGGTCCTCTTCCTTCTCTCCTGCGTGTAATCCTGGGGGGATTACC
AAATCCATCTTGTGTACAATTGTAGCCCCTTTTCCCTACCAGTGCCTGTG
GTAAAAGGGGAAGAATCCTCAACGGCGATGGGCATATGGCACTCGCGCAG
TGTCTTGAGGACCACTCGAACCATCCTGTTATGGAGGAAGGTTGAGGCGC
CGGTCTTGGTGCAGACGAGGGAGTGGGCTCGGCTCAAGCGGTCCTTGCAT
GGTAACAATGCACCTGCACCACAAAGTTTGCCTGTGTTGCAGTCTGCTCG
ATCGTGACTCCCCAGTACACGACCGATTGACTCTCGATATAGATCAGGCA
GCATTCTTTCATCTGCTGACAACCCTTGCGTTGTCAACCACGACAAAACT
CCCTTGCCTTTCGCTTCCTCCAAGCGGATCAACGCCCTCTTCTTTGGCGT
TTCCTCGCCTACTACTTTCTGCAAGTCTGTCTCCACCATGTGGCGCACTG
CTGCATGAAGAGGTTTCGAAAGGAGAGCTTGGGCTCCAAAGACTTGGTAG
TGTTGACCAAATTCATTTCGGCTGAAGGTAGACGGTGGTTGATGTTCTAC
GTCAGGGTTTCCATCTTCACGGGGTTTTCCCGCCTTCCCTGCTTCCAACA
AGTAAACTCCTTTGAGGGCGGGGGTTAACTCATCACTTGTGGCAAGTTTA
GCCCATGACTGCCCAACAGCTTTTTCAAGCTTGTCTTTGGTGATGATTTC
CTCTAGCTTCTTCAGCGAGTCAATCAGAGCCAATCCTGTCGGTAGCTGGG
CAAGCCGGGGTAGACATTGCTCAACTGTGTATCCTGTCGATGCTTGCACT
GACTTGGAGAACACCAGCGCTTGCCCTGCCACAAAAGCCGATTCTCGAAT
GAGAACATTGCTCGTGATTCCTAGTCCTCCTTCTCGCATGGGTAGGTGCA
CCTGCGCTCGAGCTGTCCCTTTGAAGAAATCTACCTCCTCGCTCTTCGTC
GGGTCTGCGCGTACCTCTTTGACCGTTGGTATTCTCATGCTGTCGGCCAT
CTTGCCAAGGACGATCTTACTCATTGCCCACATCATCATGTTGTCATGTA
TTTTTGCGGCAGAGTTGGTGATAGACGGTGCAATCGTCCTCAGCAGATGG
AACAAACGTGGCACACCAGATGAACACAGCAGTTGATAGCTGACTTGGGG
GTCGTCAATCGTTGCTAGGCGGAGTATCAATTCCGCCGGGTCACCACGGG
CGATTTTGGAAACGAAATTCCTCTGGAACTCTTCTGTTCCTACTGGGATC
CCGACAACTGGGATGCCACCTTCAGCAACTGACAGACCAATTTTCGTCAA
TTGTTGCTGTTCGTCGTTTGTCAAAGAGGACGTGCAAAGACCTTCGGGGA
AAAGCACTTTGGATTTCGGGAGACTGAGCTCAATT

protein sequence of EsuBft446_2a-0001

>EsuBft446_2 ID=EsuBft446_2|Name=EsuBft446_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=49bp
MFSCSVVVFVLLSFLSLSIAFVTPKRITLTTIVVAEVPTDWPWWKLVDQ

mRNA from alignment at Scaffold_373:269019..271253-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft446_2a-0001 ID=EsuBft446_2a-0001|Name=EsuBft446_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2235bp|location=Sequence derived from alignment at Scaffold_373:269019..271253- (Ectocarpus subulatus male Bft15b)
CAGCATGGGGGAGGCTAAATTATCCTTCGGATTAAAAACAGAAACAGCAG
CAACAGAAGACAACTGCACCCGTCTACCAAGGCTATTACCTAGTCCTCGA
GTTCGTTTAGGAGTACTTTCACCAGTATCCTCCTTGTTTTCGCTACCATC
ATTTTTATCCTCATTTCGACAAGAAGAATCTCTGGGCAGTTCTTCCCTAG
CCCTACGTTTCTTGTTGTGGGGAAGGTCATCTGGCTCAAACCCTTTGCTC
TCTTCCACTCCTCCATGTTTTCGTGCTCCGTCGTCGTCTTCGTCCTCCTT
TCTTTCCTTTCCCTTTCCATCGCCTTCGTCACTCCCAAAAGAATTACCCT
CACTACTATCGTTGTCGCAGAGGTCCCAACCGATTGGCCCTGGTGGAAGT
TGGTCGATCAGTAGCCCATGACGTTTGAGCACATCGAGAGTTCGCATCGA
CAGAAAACGAGCTAGCTCGAAGGTAAACCGTCTCCGAATCCTGTTAGTAT
GAAAAGCTTTCAGGCGAACTAAGGCCCTCTCGTCGTCAAAATTTTCCCGG
CAAAAAGCTTCGTGCGCCAAGTGGTTGGCGATAGCAACGATGAGTCGATT
GGTGCCTTTGCCAAGACCACCATTCGTTGAAAAAGCAGCAGTAAGGAGGG
TAGATCTAGACGGGTTGAAAGTTCCCGCATAGTGATTTGCCTTACTTGCA
GCTCGATCTTCGAGGGCTGATCCTGGCTTAAGGATCGACTTGTCGATGCT
TCGACCTGCTGATGGGTTGACGATTGTTACGTCGATCAGAATGGACTTGG
TGCAGAGGTCCTCTTCCTTCTCTCCTGCGTGTAATCCTGGGGGGATTACC
AAATCCATCTTGTGTACAATTGTAGCCCCTTTTCCCTACCAGTGCCTGTG
GTAAAAGGGGAAGAATCCTCAACGGCGATGGGCATATGGCACTCGCGCAG
TGTCTTGAGGACCACTCGAACCATCCTGTTATGGAGGAAGGTTGAGGCGC
CGGTCTTGGTGCAGACGAGGGAGTGGGCTCGGCTCAAGCGGTCCTTGCAT
GGTAACAATGCACCTGCACCACAAAGTTTGCCTGTGTTGCAGTCTGCTCG
ATCGTGACTCCCCAGTACACGACCGATTGACTCTCGATATAGATCAGGCA
GCATTCTTTCATCTGCTGACAACCCTTGCGTTGTCAACCACGACAAAACT
CCCTTGCCTTTCGCTTCCTCCAAGCGGATCAACGCCCTCTTCTTTGGCGT
TTCCTCGCCTACTACTTTCTGCAAGTCTGTCTCCACCATGTGGCGCACTG
CTGCATGAAGAGGTTTCGAAAGGAGAGCTTGGGCTCCAAAGACTTGGTAG
TGTTGACCAAATTCATTTCGGCTGAAGGTAGACGGTGGTTGATGTTCTAC
GTCAGGGTTTCCATCTTCACGGGGTTTTCCCGCCTTCCCTGCTTCCAACA
AGTAAACTCCTTTGAGGGCGGGGGTTAACTCATCACTTGTGGCAAGTTTA
GCCCATGACTGCCCAACAGCTTTTTCAAGCTTGTCTTTGGTGATGATTTC
CTCTAGCTTCTTCAGCGAGTCAATCAGAGCCAATCCTGTCGGTAGCTGGG
CAAGCCGGGGTAGACATTGCTCAACTGTGTATCCTGTCGATGCTTGCACT
GACTTGGAGAACACCAGCGCTTGCCCTGCCACAAAAGCCGATTCTCGAAT
GAGAACATTGCTCGTGATTCCTAGTCCTCCTTCTCGCATGGGTAGGTGCA
CCTGCGCTCGAGCTGTCCCTTTGAAGAAATCTACCTCCTCGCTCTTCGTC
GGGTCTGCGCGTACCTCTTTGACCGTTGGTATTCTCATGCTGTCGGCCAT
CTTGCCAAGGACGATCTTACTCATTGCCCACATCATCATGTTGTCATGTA
TTTTTGCGGCAGAGTTGGTGATAGACGGTGCAATCGTCCTCAGCAGATGG
AACAAACGTGGCACACCAGATGAACACAGCAGTTGATAGCTGACTTGGGG
GTCGTCAATCGTTGCTAGGCGGAGTATCAATTCCGCCGGGTCACCACGGG
CGATTTTGGAAACGAAATTCCTCTGGAACTCTTCTGTTCCTACTGGGATC
CCGACAACTGGGATGCCACCTTCAGCAACTGACAGACCAATTTTCGTCAA
TTGTTGCTGTTCGTCGTTTGTCAAAGAGGACGTGCAAAGACCTTCGGGGA
AAAGCACTTTGGATTTCGGGAGACTGAGCTCAATT

Coding sequence (CDS) from alignment at Scaffold_373:269019..271253-

>EsuBft446_2a-0001 ID=EsuBft446_2a-0001|Name=EsuBft446_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_373:269019..271253- (Ectocarpus subulatus male Bft15b)
ATGTTTTCGTGCTCCGTCGTCGTCTTCGTCCTCCTTTCTTTCCTTTCCCT
TTCCATCGCCTTCGTCACTCCCAAAAGAATTACCCTCACTACTATCGTTG
TCGCAGAGGTCCCAACCGATTGGCCCTGGTGGAAGTTGGTCGATCAGTAG