EsuBft446_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft446_8a-0001
Unique NameEsuBft446_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_373contigScaffold_373:205182..207649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog936053.I1BWQ5
ProteomeIdEsuBft446_8
Protein domainsSSF56672
Protein domainsPS51257
Protein domainsPTHR10178
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon 297 os:drosophila melanogaster gn:pol pe:3 s [Automatic annotation]
Nb exon5
Max annot lvl4751|Fungi
Length1332
Hectar predicted targeting categoryother localisation
Evalue4.98e-40
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3NVKU@4751|Fungi,1GWQ7@112252|Fungi incertae sedis
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft446_8aEsuBft446_8aEctocarpus subulatus male Bft15bgeneScaffold_373 205182..207649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft446_8a-0001EsuBft446_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_373 205182..207649 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft446_8a-0001-exonagat-exon-79273Ectocarpus subulatus male Bft15bexonScaffold_373 205182..205412 -
EsuBft446_8a-0001-exonagat-exon-79274Ectocarpus subulatus male Bft15bexonScaffold_373 206078..206731 -
EsuBft446_8a-0001-exonagat-exon-79275Ectocarpus subulatus male Bft15bexonScaffold_373 206832..206936 -
EsuBft446_8a-0001-exonagat-exon-79272Ectocarpus subulatus male Bft15bexonScaffold_373 207061..207385 -
EsuBft446_8a-0001-exonEsuBft446_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_373 207633..207649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft446_8a-0001-cdsEsuBft446_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_373 205182..205412 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft446_8a-0001 ID=EsuBft446_8a-0001|Name=EsuBft446_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1332bp|location=Sequence derived from alignment at Scaffold_373:205182..207649- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGCTGGCGCCAAGGCTCATTCAGTATTCCACGTCTCCGTGGGCTT
CTCCTTTGGTTGTCATCCCCAGAAGGACGGATCGGTTCGCATCACCGTCA
ACTACAAGCGTCTCAACGCCCTGGTGGATTTGGATGGCCAACCTCTCCCT
CGGGTGGACGATATCTTGGATTCTCTGTACATCGGGAAAGTGTTCTCCAT
CTTCGACCTCAACTCGGTCTTCCACCAGATCGTTTGCGATGAAGACACTG
TCCCGCTCACCGCCTTTTGCACTCCCACGCTCTTGTTCGAATGGCTTCGA
ATGCCGCAGGGAGCCAACGCAAGTCTGTCTTGGTTCGTCAAGGACAACCT
CAAACTGTCTCCGGGGAAGGCTCGCGTCGGCGCCACACACGCCAACTTCC
TCGGTCACATCATCTCTCCGGCCAGTGTTAGCCCTGATGGCGTCAAGGGT
TCTTCAAAGCTGCGACAGGACAACCTCAAACTGTCTCCGGGGAAGGCTCG
CGTCGGCGCCACACACGCCAACTTCCTCGGTCACATCATCTCTCCGGCCA
GTGTTAGCCCTGATGGCGTCAAGGTTAGGGCGCTCACGCACATGCCGCCG
CCGACGAATGTTAAGCAGCTTCGGAGCCTTCTCGGTGGACTCAGTTACTA
CCAGATATTCCTCAAGAATCTCGCCACCAAGGTGCGGCCTCTCAACTCTC
TTCTCAAACAAGGCGTTCCCTTCAAGTTCACCCCGGGCATGGTCAAGGTT
GTCAAATCGTTGCTAAGCGAATTCGCTCGTCCCCCGATTTTGGTCTTCGC
GGATTGGGCAGCGGTCGAGGACGACAGCCGTCCTCTTCGTTTGTGTTCCG
ACGCGTGTATCGACGGCTTTGGCGCCTCCTTGGAACAAGAACAACTCGAT
GGCTCGGTGAGACCCATTGTGTACGTCAGCCGCGCTGCTCTTCTTGCGGA
GCGTAACTGGACCGTTCTAGATCTGGGGGCTGGTGGCATTGTTTGGGCCA
TCAAACGCCTTCGCGGTTATCTGTGGTCGACCAAGTTCATCATCTCTTCG
GACCACAAAGCCTTGGAGAGCATTGGTAAGGTTGGGGAACACAACGCTAG
GGTCCCGCTCGACAAACAAGACCACCCGGACCGCCGCGCGTCTGCTGCCG
CCATCCGCAACGCCGGCATCAGCGTTTCCGCCGACTGCTCTTGCGCCATC
GGTGTCTTCGCCGTTAGCGGCGCGCCCTGCATCCCCGACTTCGCCTTTTC
TACAGGTTTCGCCCGGTACTTCGCCACTCACGATGTCCCCTTCGCGGACG
TCACCCGGGAGTGCGGCTGCCCCAGTCGCTGA
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protein sequence of EsuBft446_8a-0001

>EsuBft446_8 ID=EsuBft446_8|Name=EsuBft446_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=443bp
MPAGAKAHSVFHVSVGFSFGCHPQKDGSVRITVNYKRLNALVDLDGQPLP
RVDDILDSLYIGKVFSIFDLNSVFHQIVCDEDTVPLTAFCTPTLLFEWLR
MPQGANASLSWFVKDNLKLSPGKARVGATHANFLGHIISPASVSPDGVKG
SSKLRQDNLKLSPGKARVGATHANFLGHIISPASVSPDGVKVRALTHMPP
PTNVKQLRSLLGGLSYYQIFLKNLATKVRPLNSLLKQGVPFKFTPGMVKV
VKSLLSEFARPPILVFADWAAVEDDSRPLRLCSDACIDGFGASLEQEQLD
GSVRPIVYVSRAALLAERNWTVLDLGAGGIVWAIKRLRGYLWSTKFIISS
DHKALESIGKVGEHNARVPLDKQDHPDRRASAAAIRNAGISVSADCSCAI
GVFAVSGAPCIPDFAFSTGFARYFATHDVPFADVTRECGCPSR
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mRNA from alignment at Scaffold_373:205182..207649-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft446_8a-0001 ID=EsuBft446_8a-0001|Name=EsuBft446_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2468bp|location=Sequence derived from alignment at Scaffold_373:205182..207649- (Ectocarpus subulatus male Bft15b)
ATGCCAGCTGGCGCCAAGTTTCAAGGAAGTGAAGCCGTGGGCGGTAGCTT
GCTCCTAGAGATAGATGAAGGTTTTGTCGTTGACACACTTGTTGAGTATT
CTGACGTGTTCTCTACTTCGAAAACCGATTTTGGTTCCTGCACCATCATG
CCGTCACTCTTTCTGTCCCAGCAGGGACGAAGCCCGTTGCATCACGTCCG
CATCGTATCAACCCGTTGATGCAAAAGAAAGAGGATGCCATTTTAGACCA
GTATTTGGCGGCAGGGCTCATTCAGTATTCCACGTCTCCGTGGGCTTCTC
CTTTGGTTGTCATCCCCAGAAGGACGGATCGGTTCGCATCACCGTCAACT
ACAAGCGTCTCAACGCCCTGGTGGATTTGGATGGCCAACCTCTCCCTCGG
GTGGACGATATCTTGGATTCTCTGTACATCGGGAAAGTGTTCTCCATCTT
CGACCTCAACTCGGTCTTCCACCAGATCGTTTGCGATGAAGACACTGTCC
CGCTCACCGCCTTTTGCACTCCCACGCTCTTGTTCGAATGGCTTCGAATG
CCGCAGGGAGCCAACGCAAGTCTGTCTTGGTTCGTCAAGGTCATCAACAG
AGTGGTGCACGGTCTGGAGCATGTGCTTGCGTATCTCGACGATATCATCT
GTTTCGATGAGGAACCTCTGGGACACGTGCTCAACACGACAGGGTTCTTC
AAAGCTGCGACAGGACAACCTCAAACTGTCTCCGGGGAAGGCTCGCGTCG
GCGCCACACACGCCAACTTCCTCGGTCACATCATCTCTCCGGCCAGTGTT
AGCCCTGATGGCGTCAAGGTTAGGGCGCTCACGCACATGCCGCCGNATGT
GCTTGCGTATCTCGACGATATCATCTGTTTCGATGAGGAACCTCTGGGAC
ACGTGCTCAACACGACAGGGTTCTTCAAAGCTGCGACAGGACAACCTCAA
ACTGTCTCCGGGGAAGGCTCGCGTCGGCGCCACACACGCCAACTTCCTCG
GTCACATCATCTCTCCGGCCAGTGTTAGCCCTGATGGCGTCAAGGTTAGG
GCGCTCACGCACATGCCGCCGCCGACGAATGTTAAGCAGCTTCGGAGCCT
TCTCGGTGGACTCAGTTACTACCAGATATTCCTCAAGAATCTCGCCACCA
AGGTGCGGCCTCTCAACTCTCTTCTCAAACAAGGCGTTCCCTTCAAGTTC
ACCCCGGGCATGGTCAAGGTTGTCAAATCGTTGCTAAGCGAATTCGCTCG
TCCCCCGATTTTGGTCTTCGCGGATTGGGCAGCGGTCGAGGACGACAGCC
GTCCTCTTCGTTTGTGTTCCGACGCGTGTATCGACGGCTTTGGCGCCTCC
TTGGAACAAGAACAACTCGATGGCTCGGTGAGACCCATTGTGTACGTCAG
CCGCGCTGCTCTTCTTGCGGAGCGTAACTGGACCGTTCTAGATCTGGGGG
CTGGTGGCATTGTTTGGGCCATCAAACGCCTTCGCGGTTATCTGTGGTCG
ACCAAGTTCATCATCTCTTCGGACCACAAAGCCTTGGAGAGCATTGGTAA
GGTTGGGGAACACAACGCTAGGGTACAACGATGGATCGAATTCCTATCCA
ACTTCACTACACCCTAACATATCGGAAAGGTTCGGCAAGCGGCAACGCGG
ATTTTCATTCGCGGCTGCCTTTACCAGCACAAGACACGGACAAAACCGGC
CCCGACTGCATTGATGGTGTTGATCAAGCGGATGTTTTCCTCATTCGGGC
TTGCGGGCGCAACTATCACTCGTCGTCTACGCCAGCGGGGGCGGTTTGGG
TGGGCTCCGCCCTCCTTGCCCGGCGGGAGTCTGTTGAAGTCTGTTCCCCC
CCCACCGCTCCAGCCTTCCGATTTTGGGGATTTTCGCCGACATCACCCGC
GTCGGTTGGATACTCTGATGGACTCAACGATTGCCTGCGAGGATTCCCGG
CGGTCTCCGGGGGTGTTCATCGTTTCGTCTGTTCCCGGATGTTGAGGGCC
TGTTTCTCCTTTGACTCCTGCTGCGTGCCGCGTGATGTCTCCTGTCGCGT
CTTTGGCGACTAGATATGTGCACGTTTTGTCTTCTCTTCCGGAGCGGGGA
CCGCTCATTTCTTCACGGACTCGGGCCAAGACTACGGCTGCTTCCGGAGG
CACCGTCACCGGTTCCGCTTATTTCGGACGCCAGCCGCGGGCTACCATTG
TCCCTCGGACATCGTCGCCTGCCCGTCGCTCTAGCAGGTCCCGCTCGACA
AACAAGACCACCCGGACCGCCGCGCGTCTGCTGCCGCCATCCGCAACGCC
GGCATCAGCGTTTCCGCCGACTGCTCTTGCGCCATCGGTGTCTTCGCCGT
TAGCGGCGCGCCCTGCATCCCCGACTTCGCCTTTTCTACAGGTTTCGCCC
GGTACTTCGCCACTCACGATGTCCCCTTCGCGGACGTCACCCGGGAGTGC
GGCTGCCCCAGTCGCTGA
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Coding sequence (CDS) from alignment at Scaffold_373:205182..207649-

>EsuBft446_8a-0001 ID=EsuBft446_8a-0001|Name=EsuBft446_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1332bp|location=Sequence derived from alignment at Scaffold_373:205182..207649- (Ectocarpus subulatus male Bft15b)
ATGCCAGCTGGCGCCAAGGCTCATTCAGTATTCCACGTCTCCGTGGGCTT
CTCCTTTGGTTGTCATCCCCAGAAGGACGGATCGGTTCGCATCACCGTCA
ACTACAAGCGTCTCAACGCCCTGGTGGATTTGGATGGCCAACCTCTCCCT
CGGGTGGACGATATCTTGGATTCTCTGTACATCGGGAAAGTGTTCTCCAT
CTTCGACCTCAACTCGGTCTTCCACCAGATCGTTTGCGATGAAGACACTG
TCCCGCTCACCGCCTTTTGCACTCCCACGCTCTTGTTCGAATGGCTTCGA
ATGCCGCAGGGAGCCAACGCAAGTCTGTCTTGGTTCGTCAAGGACAACCT
CAAACTGTCTCCGGGGAAGGCTCGCGTCGGCGCCACACACGCCAACTTCC
TCGGTCACATCATCTCTCCGGCCAGTGTTAGCCCTGATGGCGTCAAGGGT
TCTTCAAAGCTGCGACAGGACAACCTCAAACTGTCTCCGGGGAAGGCTCG
CGTCGGCGCCACACACGCCAACTTCCTCGGTCACATCATCTCTCCGGCCA
GTGTTAGCCCTGATGGCGTCAAGGTTAGGGCGCTCACGCACATGCCGCCG
CCGACGAATGTTAAGCAGCTTCGGAGCCTTCTCGGTGGACTCAGTTACTA
CCAGATATTCCTCAAGAATCTCGCCACCAAGGTGCGGCCTCTCAACTCTC
TTCTCAAACAAGGCGTTCCCTTCAAGTTCACCCCGGGCATGGTCAAGGTT
GTCAAATCGTTGCTAAGCGAATTCGCTCGTCCCCCGATTTTGGTCTTCGC
GGATTGGGCAGCGGTCGAGGACGACAGCCGTCCTCTTCGTTTGTGTTCCG
ACGCGTGTATCGACGGCTTTGGCGCCTCCTTGGAACAAGAACAACTCGAT
GGCTCGGTGAGACCCATTGTGTACGTCAGCCGCGCTGCTCTTCTTGCGGA
GCGTAACTGGACCGTTCTAGATCTGGGGGCTGGTGGCATTGTTTGGGCCA
TCAAACGCCTTCGCGGTTATCTGTGGTCGACCAAGTTCATCATCTCTTCG
GACCACAAAGCCTTGGAGAGCATTGGTAAGGTTGGGGAACACAACGCTAG
GGTCCCGCTCGACAAACAAGACCACCCGGACCGCCGCGCGTCTGCTGCCG
CCATCCGCAACGCCGGCATCAGCGTTTCCGCCGACTGCTCTTGCGCCATC
GGTGTCTTCGCCGTTAGCGGCGCGCCCTGCATCCCCGACTTCGCCTTTTC
TACAGGTTTCGCCCGGTACTTCGCCACTCACGATGTCCCCTTCGCGGACG
TCACCCGGGAGTGCGGCTGCCCCAGTCGCTGA
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