Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 936053.I1BWQ5 |
| ProteomeId | EsuBft446_8 |
| Protein domains | SSF56672 |
| Protein domains | PS51257 |
| Protein domains | PTHR10178 |
| Protein domains | G3DSA |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon 297 os:drosophila melanogaster gn:pol pe:3 s [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 4751|Fungi |
| Length | 1332 |
| Hectar predicted targeting category | other localisation |
| Evalue | 4.98e-40 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3NVKU@4751|Fungi,1GWQ7@112252|Fungi incertae sedis |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft446_8a-0001 ID=EsuBft446_8a-0001|Name=EsuBft446_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1332bp|location=Sequence derived from alignment at Scaffold_373:205182..207649- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCCAGCTGGCGCCAAGGCTCATTCAGTATTCCACGTCTCCGTGGGCTT
CTCCTTTGGTTGTCATCCCCAGAAGGACGGATCGGTTCGCATCACCGTCA
ACTACAAGCGTCTCAACGCCCTGGTGGATTTGGATGGCCAACCTCTCCCT
CGGGTGGACGATATCTTGGATTCTCTGTACATCGGGAAAGTGTTCTCCAT
CTTCGACCTCAACTCGGTCTTCCACCAGATCGTTTGCGATGAAGACACTG
TCCCGCTCACCGCCTTTTGCACTCCCACGCTCTTGTTCGAATGGCTTCGA
ATGCCGCAGGGAGCCAACGCAAGTCTGTCTTGGTTCGTCAAGGACAACCT
CAAACTGTCTCCGGGGAAGGCTCGCGTCGGCGCCACACACGCCAACTTCC
TCGGTCACATCATCTCTCCGGCCAGTGTTAGCCCTGATGGCGTCAAGGGT
TCTTCAAAGCTGCGACAGGACAACCTCAAACTGTCTCCGGGGAAGGCTCG
CGTCGGCGCCACACACGCCAACTTCCTCGGTCACATCATCTCTCCGGCCA
GTGTTAGCCCTGATGGCGTCAAGGTTAGGGCGCTCACGCACATGCCGCCG
CCGACGAATGTTAAGCAGCTTCGGAGCCTTCTCGGTGGACTCAGTTACTA
CCAGATATTCCTCAAGAATCTCGCCACCAAGGTGCGGCCTCTCAACTCTC
TTCTCAAACAAGGCGTTCCCTTCAAGTTCACCCCGGGCATGGTCAAGGTT
GTCAAATCGTTGCTAAGCGAATTCGCTCGTCCCCCGATTTTGGTCTTCGC
GGATTGGGCAGCGGTCGAGGACGACAGCCGTCCTCTTCGTTTGTGTTCCG
ACGCGTGTATCGACGGCTTTGGCGCCTCCTTGGAACAAGAACAACTCGAT
GGCTCGGTGAGACCCATTGTGTACGTCAGCCGCGCTGCTCTTCTTGCGGA
GCGTAACTGGACCGTTCTAGATCTGGGGGCTGGTGGCATTGTTTGGGCCA
TCAAACGCCTTCGCGGTTATCTGTGGTCGACCAAGTTCATCATCTCTTCG
GACCACAAAGCCTTGGAGAGCATTGGTAAGGTTGGGGAACACAACGCTAG
GGTCCCGCTCGACAAACAAGACCACCCGGACCGCCGCGCGTCTGCTGCCG
CCATCCGCAACGCCGGCATCAGCGTTTCCGCCGACTGCTCTTGCGCCATC
GGTGTCTTCGCCGTTAGCGGCGCGCCCTGCATCCCCGACTTCGCCTTTTC
TACAGGTTTCGCCCGGTACTTCGCCACTCACGATGTCCCCTTCGCGGACG
TCACCCGGGAGTGCGGCTGCCCCAGTCGCTGA back to topprotein sequence of EsuBft446_8a-0001 >EsuBft446_8 ID=EsuBft446_8|Name=EsuBft446_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=443bp
MPAGAKAHSVFHVSVGFSFGCHPQKDGSVRITVNYKRLNALVDLDGQPLP
RVDDILDSLYIGKVFSIFDLNSVFHQIVCDEDTVPLTAFCTPTLLFEWLR
MPQGANASLSWFVKDNLKLSPGKARVGATHANFLGHIISPASVSPDGVKG
SSKLRQDNLKLSPGKARVGATHANFLGHIISPASVSPDGVKVRALTHMPP
PTNVKQLRSLLGGLSYYQIFLKNLATKVRPLNSLLKQGVPFKFTPGMVKV
VKSLLSEFARPPILVFADWAAVEDDSRPLRLCSDACIDGFGASLEQEQLD
GSVRPIVYVSRAALLAERNWTVLDLGAGGIVWAIKRLRGYLWSTKFIISS
DHKALESIGKVGEHNARVPLDKQDHPDRRASAAAIRNAGISVSADCSCAI
GVFAVSGAPCIPDFAFSTGFARYFATHDVPFADVTRECGCPSR back to topmRNA from alignment at Scaffold_373:205182..207649- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft446_8a-0001 ID=EsuBft446_8a-0001|Name=EsuBft446_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2468bp|location=Sequence derived from alignment at Scaffold_373:205182..207649- (Ectocarpus subulatus male Bft15b)
ATGCCAGCTGGCGCCAAGTTTCAAGGAAGTGAAGCCGTGGGCGGTAGCTT
GCTCCTAGAGATAGATGAAGGTTTTGTCGTTGACACACTTGTTGAGTATT
CTGACGTGTTCTCTACTTCGAAAACCGATTTTGGTTCCTGCACCATCATG
CCGTCACTCTTTCTGTCCCAGCAGGGACGAAGCCCGTTGCATCACGTCCG
CATCGTATCAACCCGTTGATGCAAAAGAAAGAGGATGCCATTTTAGACCA
GTATTTGGCGGCAGGGCTCATTCAGTATTCCACGTCTCCGTGGGCTTCTC
CTTTGGTTGTCATCCCCAGAAGGACGGATCGGTTCGCATCACCGTCAACT
ACAAGCGTCTCAACGCCCTGGTGGATTTGGATGGCCAACCTCTCCCTCGG
GTGGACGATATCTTGGATTCTCTGTACATCGGGAAAGTGTTCTCCATCTT
CGACCTCAACTCGGTCTTCCACCAGATCGTTTGCGATGAAGACACTGTCC
CGCTCACCGCCTTTTGCACTCCCACGCTCTTGTTCGAATGGCTTCGAATG
CCGCAGGGAGCCAACGCAAGTCTGTCTTGGTTCGTCAAGGTCATCAACAG
AGTGGTGCACGGTCTGGAGCATGTGCTTGCGTATCTCGACGATATCATCT
GTTTCGATGAGGAACCTCTGGGACACGTGCTCAACACGACAGGGTTCTTC
AAAGCTGCGACAGGACAACCTCAAACTGTCTCCGGGGAAGGCTCGCGTCG
GCGCCACACACGCCAACTTCCTCGGTCACATCATCTCTCCGGCCAGTGTT
AGCCCTGATGGCGTCAAGGTTAGGGCGCTCACGCACATGCCGCCGNATGT
GCTTGCGTATCTCGACGATATCATCTGTTTCGATGAGGAACCTCTGGGAC
ACGTGCTCAACACGACAGGGTTCTTCAAAGCTGCGACAGGACAACCTCAA
ACTGTCTCCGGGGAAGGCTCGCGTCGGCGCCACACACGCCAACTTCCTCG
GTCACATCATCTCTCCGGCCAGTGTTAGCCCTGATGGCGTCAAGGTTAGG
GCGCTCACGCACATGCCGCCGCCGACGAATGTTAAGCAGCTTCGGAGCCT
TCTCGGTGGACTCAGTTACTACCAGATATTCCTCAAGAATCTCGCCACCA
AGGTGCGGCCTCTCAACTCTCTTCTCAAACAAGGCGTTCCCTTCAAGTTC
ACCCCGGGCATGGTCAAGGTTGTCAAATCGTTGCTAAGCGAATTCGCTCG
TCCCCCGATTTTGGTCTTCGCGGATTGGGCAGCGGTCGAGGACGACAGCC
GTCCTCTTCGTTTGTGTTCCGACGCGTGTATCGACGGCTTTGGCGCCTCC
TTGGAACAAGAACAACTCGATGGCTCGGTGAGACCCATTGTGTACGTCAG
CCGCGCTGCTCTTCTTGCGGAGCGTAACTGGACCGTTCTAGATCTGGGGG
CTGGTGGCATTGTTTGGGCCATCAAACGCCTTCGCGGTTATCTGTGGTCG
ACCAAGTTCATCATCTCTTCGGACCACAAAGCCTTGGAGAGCATTGGTAA
GGTTGGGGAACACAACGCTAGGGTACAACGATGGATCGAATTCCTATCCA
ACTTCACTACACCCTAACATATCGGAAAGGTTCGGCAAGCGGCAACGCGG
ATTTTCATTCGCGGCTGCCTTTACCAGCACAAGACACGGACAAAACCGGC
CCCGACTGCATTGATGGTGTTGATCAAGCGGATGTTTTCCTCATTCGGGC
TTGCGGGCGCAACTATCACTCGTCGTCTACGCCAGCGGGGGCGGTTTGGG
TGGGCTCCGCCCTCCTTGCCCGGCGGGAGTCTGTTGAAGTCTGTTCCCCC
CCCACCGCTCCAGCCTTCCGATTTTGGGGATTTTCGCCGACATCACCCGC
GTCGGTTGGATACTCTGATGGACTCAACGATTGCCTGCGAGGATTCCCGG
CGGTCTCCGGGGGTGTTCATCGTTTCGTCTGTTCCCGGATGTTGAGGGCC
TGTTTCTCCTTTGACTCCTGCTGCGTGCCGCGTGATGTCTCCTGTCGCGT
CTTTGGCGACTAGATATGTGCACGTTTTGTCTTCTCTTCCGGAGCGGGGA
CCGCTCATTTCTTCACGGACTCGGGCCAAGACTACGGCTGCTTCCGGAGG
CACCGTCACCGGTTCCGCTTATTTCGGACGCCAGCCGCGGGCTACCATTG
TCCCTCGGACATCGTCGCCTGCCCGTCGCTCTAGCAGGTCCCGCTCGACA
AACAAGACCACCCGGACCGCCGCGCGTCTGCTGCCGCCATCCGCAACGCC
GGCATCAGCGTTTCCGCCGACTGCTCTTGCGCCATCGGTGTCTTCGCCGT
TAGCGGCGCGCCCTGCATCCCCGACTTCGCCTTTTCTACAGGTTTCGCCC
GGTACTTCGCCACTCACGATGTCCCCTTCGCGGACGTCACCCGGGAGTGC
GGCTGCCCCAGTCGCTGA back to topCoding sequence (CDS) from alignment at Scaffold_373:205182..207649- >EsuBft446_8a-0001 ID=EsuBft446_8a-0001|Name=EsuBft446_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1332bp|location=Sequence derived from alignment at Scaffold_373:205182..207649- (Ectocarpus subulatus male Bft15b)
ATGCCAGCTGGCGCCAAGGCTCATTCAGTATTCCACGTCTCCGTGGGCTT
CTCCTTTGGTTGTCATCCCCAGAAGGACGGATCGGTTCGCATCACCGTCA
ACTACAAGCGTCTCAACGCCCTGGTGGATTTGGATGGCCAACCTCTCCCT
CGGGTGGACGATATCTTGGATTCTCTGTACATCGGGAAAGTGTTCTCCAT
CTTCGACCTCAACTCGGTCTTCCACCAGATCGTTTGCGATGAAGACACTG
TCCCGCTCACCGCCTTTTGCACTCCCACGCTCTTGTTCGAATGGCTTCGA
ATGCCGCAGGGAGCCAACGCAAGTCTGTCTTGGTTCGTCAAGGACAACCT
CAAACTGTCTCCGGGGAAGGCTCGCGTCGGCGCCACACACGCCAACTTCC
TCGGTCACATCATCTCTCCGGCCAGTGTTAGCCCTGATGGCGTCAAGGGT
TCTTCAAAGCTGCGACAGGACAACCTCAAACTGTCTCCGGGGAAGGCTCG
CGTCGGCGCCACACACGCCAACTTCCTCGGTCACATCATCTCTCCGGCCA
GTGTTAGCCCTGATGGCGTCAAGGTTAGGGCGCTCACGCACATGCCGCCG
CCGACGAATGTTAAGCAGCTTCGGAGCCTTCTCGGTGGACTCAGTTACTA
CCAGATATTCCTCAAGAATCTCGCCACCAAGGTGCGGCCTCTCAACTCTC
TTCTCAAACAAGGCGTTCCCTTCAAGTTCACCCCGGGCATGGTCAAGGTT
GTCAAATCGTTGCTAAGCGAATTCGCTCGTCCCCCGATTTTGGTCTTCGC
GGATTGGGCAGCGGTCGAGGACGACAGCCGTCCTCTTCGTTTGTGTTCCG
ACGCGTGTATCGACGGCTTTGGCGCCTCCTTGGAACAAGAACAACTCGAT
GGCTCGGTGAGACCCATTGTGTACGTCAGCCGCGCTGCTCTTCTTGCGGA
GCGTAACTGGACCGTTCTAGATCTGGGGGCTGGTGGCATTGTTTGGGCCA
TCAAACGCCTTCGCGGTTATCTGTGGTCGACCAAGTTCATCATCTCTTCG
GACCACAAAGCCTTGGAGAGCATTGGTAAGGTTGGGGAACACAACGCTAG
GGTCCCGCTCGACAAACAAGACCACCCGGACCGCCGCGCGTCTGCTGCCG
CCATCCGCAACGCCGGCATCAGCGTTTCCGCCGACTGCTCTTGCGCCATC
GGTGTCTTCGCCGTTAGCGGCGCGCCCTGCATCCCCGACTTCGCCTTTTC
TACAGGTTTCGCCCGGTACTTCGCCACTCACGATGTCCCCTTCGCGGACG
TCACCCGGGAGTGCGGCTGCCCCAGTCGCTGA back to top
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