EsuBft2083_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2083_2a-0001
Unique Name	EsuBft2083_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_373	contig	Scaffold_373:12868..15905 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	159749.K0T4Q0
ProteomeId	EsuBft2083_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	202
Hectar predicted targeting category	other localisation
Evalue	2.63e-21
EggNOG OGs	2D06V@1\|root,2SD1E@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2083_2a	EsuBft2083_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_373 12868..15905 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2083_2a-0001	EsuBft2083_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_373 13075..15227 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2083_2a-0001-exon	EsuBft2083_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_373 12868..13123 +
EsuBft2083_2a-0001-exon	agat-exon-77805	Ectocarpus subulatus male Bft15b	exon	Scaffold_373 13771..13917 +
EsuBft2083_2a-0001-exon	agat-exon-77804	Ectocarpus subulatus male Bft15b	exon	Scaffold_373 14281..15905 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2083_2a-0001-exon	agat-five_prime_utr-5267	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_373 12868..13074 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2083_2a-0001-cds	EsuBft2083_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_373 13075..13123 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2083_2a-0001-exon	agat-three_prime_utr-8109	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_373 15228..15905 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_373:12868..15905+
coding sequence from alignment at Scaffold_373:12868..15905+

spliced messenger RNA

>EsuBft2083_2a-0001 ID=EsuBft2083_2a-0001|Name=EsuBft2083_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2028bp|location=Sequence derived from alignment at Scaffold_373:12868..15905+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACAGCATATAGGGACATCTCCCCTGCGGGTAACAGGCTCAACAAATCAGT
TTGGTAGCTGTCTTGTGTGTCTCATATATGTTTTGTTGGGAAGGTGCAGA
CGAGAGGTGTTGGGTACTGTTGGTTAGTCGGGCGTTTTGTGTGTGGCACC
CTGTTAGTTGTAGGATATACAGTCTCCATCAGTTTACATACGTGTTTTCA
GTTTGGTATGCATATGTGCGGAGTATGTGCGGCTGATGTGCGGGCACACG
GGAGTGGAAAATCGCTCAACAGCCTCGGGATCATCGGCCGACCACAGGAA
CGGCAGTTCAAGCGACAGCGGCGGGCTGGCTCCGACGCGACCCGCGCGGA
ATTTGCGATGCAGCAGATGCTCACCAGCCGCGAAAAACGCTCGATAGAGC
GGGGCAAGGATGGGTACTGGGGCTACGACCAGTTCGAAGAACAGGTCGAA
GACGTGATGGACGTCTTGGAGCACATCGATCCCGACATGCAAATAGTGTT
CGAGGTCGACCACTCGTCGGGCCATGGGAAGCAGCGAGAGGATGGTTTGC
ATGTATCGAACATGAACGTCAAGTATGGGGGGAAGCAAAAGGTGTTGCGG
GATTCGGTCATGACGGAGGAGTGCTTGGGTCCGGAGGAGGCGAAAATGTA
TTTCGCCAACGGCAGGTGGAGCACGAAGTTCAGCGAGGGGGCAGTGTGTG
TTGACCAGAAGCTGACGGTGGGCCAGACTCAGACTAGCACTTTCGCGGTA
TGTGCGCCTCCTCCGTTTTTCGAATGGCACGCTCCGCGCAAAGACAAGAA
GAACGCGAAGGGGAAGGTCAAGGAAGGGTACGAGGGGAAAGCGAAAGGGG
TCAGGCAGTACCTGTGGGAGCGTGGGTGGTGGAAGGACGGCATGTCAACA
GGGGCGGGAGTCAGTGACGATATGCACGTGGAAAAGGTTCTGCAAGCCTT
GCCTGACTTTAAGAATGAGAGGACAGCCCTGCAGCACCTGGTAGAGAGTA
GGGGACACATTCTTTTGTCGTCTCCGAAGTGTCACCCGGAGGTAGCGGGG
GTAGGGATCGAGTACTCGTGGGGGTTTTCCAAGCAGAAGTTTCGGCGGAA
GATCAATGATGAGGTCCCGAAGCACTTGCACGACAACATCGAAGAGTCGC
TGTGCATACACAAGTACTTGACAATCGGTCGGGTGCGGCGCTTTGCCCGG
CGAACACGAGACTACTGCCGGGCTTACCGCGAGATTGCGCTTCGCGGGGT
AGTCATCAGGAACAAGGAGTTCATCGAGAAGATGCGCAAGATCCAAAAGG
CCCACCGCAACATGTTGGACATGGAAACTAGTTTTCTTGGCTTCCAGTAA
CAACGTCAGCCGGCCGATGGCGAGGGGGGGGGGTCTCGAGTTGTGTGTGC
GTGTTTTGTTTTTTTCTGCGAGATAAACGGGTGTGGCGGGGGTGTGTTTA
TATGAGTCGGTTTCAAGCTGTAGTTTGCATCATTTTTTTCGGTAAGATTA
ACCGGTGCGAGAAGTTGTGTGTGTGTGTTGATGAGTCTTTCAGTTTGAAT
GTTGTTTGTAGATAAGCGGGTATTTTTTAACCGCTGTCAATCAACGAAGT
GTTTTTTTTTTTGTACAAGGAAATGTCAACTTTTGTGCGATTTGTGCAAA
ACATTTGTCATGCGTTTTTGGAGCGCTTACCTTCAGATTACAACCTCTTG
CATGTATGTGTGTCACGTCATTACGATCGATAAGCACCCATACCTACCTG
TCCAACCAAAGGGGTACAGTCAGCATCTGTGCACCTCTTGCCATCAGGCC
GCTTTCGCGCCCCTTTTCTCGGGCTGTGAGGCCTTCATTTTCCTACACAA
TTTCCGCCCCTGCACCCAGGTATCGAGGTCATTACGCAATTTGCTATTTC
CGAGCCGGTTTCCACGAACTAGAAGCTGAAATTTTGATATGTGATTGGGA
GTGGTCTTACAAATGCCCCCGAGTCAGGTGCCGTTTTTTTTTTTTTTAAG
CAACAAAAACCCGTATGTTAGGATTCTC

protein sequence of EsuBft2083_2a-0001

>EsuBft2083_2 ID=EsuBft2083_2|Name=EsuBft2083_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=380bp
MHMCGVCAADVRAHGSGKSLNSLGIIGRPQERQFKRQRRAGSDATRAEFA
MQQMLTSREKRSIERGKDGYWGYDQFEEQVEDVMDVLEHIDPDMQIVFEV
DHSSGHGKQREDGLHVSNMNVKYGGKQKVLRDSVMTEECLGPEEAKMYFA
NGRWSTKFSEGAVCVDQKLTVGQTQTSTFAVCAPPPFFEWHAPRKDKKNA
KGKVKEGYEGKAKGVRQYLWERGWWKDGMSTGAGVSDDMHVEKVLQALPD
FKNERTALQHLVESRGHILLSSPKCHPEVAGVGIEYSWGFSKQKFRRKIN
DEVPKHLHDNIEESLCIHKYLTIGRVRRFARRTRDYCRAYREIALRGVVI
RNKEFIEKMRKIQKAHRNMLDMETSFLGFQ

mRNA from alignment at Scaffold_373:12868..15905+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2083_2a-0001 ID=EsuBft2083_2a-0001|Name=EsuBft2083_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3038bp|location=Sequence derived from alignment at Scaffold_373:12868..15905+ (Ectocarpus subulatus male Bft15b)
ACAGCATATAGGGACATCTCCCCTGCGGGTAACAGGCTCAACAAATCAGT
TTGGTAGCTGTCTTGTGTGTCTCATATATGTTTTGTTGGGAAGGTGCAGA
CGAGAGGTGTTGGGTACTGTTGGTTAGTCGGGCGTTTTGTGTGTGGCACC
CTGTTAGTTGTAGGATATACAGTCTCCATCAGTTTACATACGTGTTTTCA
GTTTGGTATGCATATGTGCGGAGTATGTGCGGCTGATGTGCGGGCACACG
GGAGTGGTGTCACCGTATATAAAAAAAAAAAGATTTTTGAATTTTCGACG
GCATGCTTCGTACGCACAAGTGTAATCGCCCAACGTGATATCCACGTCCA
CATGAGTTGCCTTCATTACTCGTCTGTTGTTCTGGTACTAGAGACGCCTA
CAGCAGTACGCACAACGTGTTTTGCTACAATATGGTACCTGTACACCCCG
ATGTGTTTGCTGCAACCATGTGCTGCCGTATATGACACAAGATAACACAC
GCCCCTGGACGGATTTTGAAAGCTCGATTCATCACCAGCAGAACGAGTCG
CAGCGCCGAAAACGGCGGTGTTGAAGCCGTCTTGTCGAGACCTCTCCGGA
AACGTATCGTGTCGTTCATGCATCCTCTTCGTCGTGGAGTAATCGAGCTG
TGGAAATCGACCCAGGGGGTGTGTTATCATGTGTCGTACTTCGGTCTGAA
AGTAAAACTCTGCATGAAAATGCGCCGATGTCGTCACACTTTCGCGAAAG
GTTGACCGGTTGTTGCACCTCTGCACATCATGTACTACTTGGGTGATCTC
CAACTCTAAAGTACTTGCTGCAAGTACTGCTGTAGTGCAAAACAACGAAT
AACAATGTGCCGCATTGCCTCGTGCTTCAAACTCCCAACCGCCGCTCATG
CAGGAAAATCGCTCAACAGCCTCGGGATCATCGGCCGACCACAGGAACGG
CAGTTCAAGCGACAGCGGCGGGCTGGCTCCGACGCGACCCGCGCGGAATT
TGCGATGCAGCAGATGCTCACCAGCCGCGAAAAACGCTCGATAGAGCGGG
GTTGGAGAAGGAGAGACAGAAAGCTTCGAAAGGCCTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCGACCCGCGCGGAATTTTCGATGCAGCAGATGCTCA
CCAGCCGCGAAAAACGCTCGATAGAGCGGGGCTGGAGAAGGAGAGACAGA
AAGCTTCGAAAGGCCTAGGCCTACCTCAGCGGCCGGATCAAAGACTTGAC
GGCAAACGTTGCAGCCAACGAGCAACACATCAAGCGTCTCCAGGACGCCC
TCCGGACTNAAAGGCAAGGATGGGTACTGGGGCTACGACCAGTTCGAAGA
ACAGGTCGAAGACGTGATGGACGTCTTGGAGCACATCGATCCCGACATGC
AAATAGTGTTCGAGGTCGACCACTCGTCGGGCCATGGGAAGCAGCGAGAG
GATGGTTTGCATGTATCGAACATGAACGTCAAGTATGGGGGGAAGCAAAA
GGTGTTGCGGGATTCGGTCATGACGGAGGAGTGCTTGGGTCCGGAGGAGG
CGAAAATGTATTTCGCCAACGGCAGGTGGAGCACGAAGTTCAGCGAGGGG
GCAGTGTGTGTTGACCAGAAGCTGACGGTGGGCCAGACTCAGACTAGCAC
TTTCGCGGTATGTGCGCCTCCTCCGTTTTTCGAATGGCACGCTCCGCGCA
AAGACAAGAAGAACGCGAAGGGGAAGGTCAAGGAAGGGTACGAGGGGAAA
GCGAAAGGGGTCAGGCAGTACCTGTGGGAGCGTGGGTGGTGGAAGGACGG
CATGTCAACAGGGGCGGGAGTCAGTGACGATATGCACGTGGAAAAGGTTC
TGCAAGCCTTGCCTGACTTTAAGAATGAGAGGACAGCCCTGCAGCACCTG
GTAGAGAGTAGGGGACACATTCTTTTGTCGTCTCCGAAGTGTCACCCGGA
GGTAGCGGGGGTAGGGATCGAGTACTCGTGGGGGTTTTCCAAGCAGAAGT
TTCGGCGGAAGATCAATGATGAGGTCCCGAAGCACTTGCACGACAACATC
GAAGAGTCGCTGTGCATACACAAGTACTTGACAATCGGTCGGGTGCGGCG
CTTTGCCCGGCGAACACGAGACTACTGCCGGGCTTACCGCGAGATTGCGC
TTCGCGGGGTAGTCATCAGGAACAAGGAGTTCATCGAGAAGATGCGCAAG
ATCCAAAAGGCCCACCGCAACATGTTGGACATGGAAACTAGTTTTCTTGG
CTTCCAGTAACAACGTCAGCCGGCCGATGGCGAGGGGGGGGGGTCTCGAG
TTGTGTGTGCGTGTTTTGTTTTTTTCTGCGAGATAAACGGGTGTGGCGGG
GGTGTGTTTATATGAGTCGGTTTCAAGCTGTAGTTTGCATCATTTTTTTC
GGTAAGATTAACCGGTGCGAGAAGTTGTGTGTGTGTGTTGATGAGTCTTT
CAGTTTGAATGTTGTTTGTAGATAAGCGGGTATTTTTTAACCGCTGTCAA
TCAACGAAGTGTTTTTTTTTTTGTACAAGGAAATGTCAACTTTTGTGCGA
TTTGTGCAAAACATTTGTCATGCGTTTTTGGAGCGCTTACCTTCAGATTA
CAACCTCTTGCATGTATGTGTGTCACGTCATTACGATCGATAAGCACCCA
TACCTACCTGTCCAACCAAAGGGGTACAGTCAGCATCTGTGCACCTCTTG
CCATCAGGCCGCTTTCGCGCCCCTTTTCTCGGGCTGTGAGGCCTTCATTT
TCCTACACAATTTCCGCCCCTGCACCCAGGTATCGAGGTCATTACGCAAT
TTGCTATTTCCGAGCCGGTTTCCACGAACTAGAAGCTGAAATTTTGATAT
GTGATTGGGAGTGGTCTTACAAATGCCCCCGAGTCAGGTGCCGTTTTTTT
TTTTTTTAAGCAACAAAAACCCGTATGTTAGGATTCTC

Coding sequence (CDS) from alignment at Scaffold_373:12868..15905+

>EsuBft2083_2a-0001 ID=EsuBft2083_2a-0001|Name=EsuBft2083_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1143bp|location=Sequence derived from alignment at Scaffold_373:12868..15905+ (Ectocarpus subulatus male Bft15b)
ATGCATATGTGCGGAGTATGTGCGGCTGATGTGCGGGCACACGGGAGTGG
AAAATCGCTCAACAGCCTCGGGATCATCGGCCGACCACAGGAACGGCAGT
TCAAGCGACAGCGGCGGGCTGGCTCCGACGCGACCCGCGCGGAATTTGCG
ATGCAGCAGATGCTCACCAGCCGCGAAAAACGCTCGATAGAGCGGGGCAA
GGATGGGTACTGGGGCTACGACCAGTTCGAAGAACAGGTCGAAGACGTGA
TGGACGTCTTGGAGCACATCGATCCCGACATGCAAATAGTGTTCGAGGTC
GACCACTCGTCGGGCCATGGGAAGCAGCGAGAGGATGGTTTGCATGTATC
GAACATGAACGTCAAGTATGGGGGGAAGCAAAAGGTGTTGCGGGATTCGG
TCATGACGGAGGAGTGCTTGGGTCCGGAGGAGGCGAAAATGTATTTCGCC
AACGGCAGGTGGAGCACGAAGTTCAGCGAGGGGGCAGTGTGTGTTGACCA
GAAGCTGACGGTGGGCCAGACTCAGACTAGCACTTTCGCGGTATGTGCGC
CTCCTCCGTTTTTCGAATGGCACGCTCCGCGCAAAGACAAGAAGAACGCG
AAGGGGAAGGTCAAGGAAGGGTACGAGGGGAAAGCGAAAGGGGTCAGGCA
GTACCTGTGGGAGCGTGGGTGGTGGAAGGACGGCATGTCAACAGGGGCGG
GAGTCAGTGACGATATGCACGTGGAAAAGGTTCTGCAAGCCTTGCCTGAC
TTTAAGAATGAGAGGACAGCCCTGCAGCACCTGGTAGAGAGTAGGGGACA
CATTCTTTTGTCGTCTCCGAAGTGTCACCCGGAGGTAGCGGGGGTAGGGA
TCGAGTACTCGTGGGGGTTTTCCAAGCAGAAGTTTCGGCGGAAGATCAAT
GATGAGGTCCCGAAGCACTTGCACGACAACATCGAAGAGTCGCTGTGCAT
ACACAAGTACTTGACAATCGGTCGGGTGCGGCGCTTTGCCCGGCGAACAC
GAGACTACTGCCGGGCTTACCGCGAGATTGCGCTTCGCGGGGTAGTCATC
AGGAACAAGGAGTTCATCGAGAAGATGCGCAAGATCCAAAAGGCCCACCG
CAACATGTTGGACATGGAAACTAGTTTTCTTGGCTTCCAGTAA