Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft102_17 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 203 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-22_000990.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft102_17a-0001 ID=EsuBft102_17a-0001|Name=EsuBft102_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2030bp|location=Sequence derived from alignment at Scaffold_372:119043..121277+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CGTCTTTGTTCTCTCTCTCGCACCAGATTGTGCCATCTGGGCCCCCGAAC
TCCACTACGGTGTTGCTGAACGCCCTGGGGTCACACGAGACAATCCAAGA
AACGAAGACGCGTTTGCGGGACGAGGCAGCACACCACAGGTGGCGACGTC
AGCAGCGGCGGTGGCTGCCGATGCGGCTTCTTGTACCGGTCCAGGTGGAA
ACTCCTCCCGGAGACGGCGGAGACGGCGAGTTGTGGCCTACGTGCGGGGC
GGCCTCTGCGCCCTCGTGGCCTTCCGTGAACGAGAGCGACGGTGCGGCGG
CACTGGTGCTGCTGCTGGCGGGGAGGAGGTGGCAACGGGCGACGACCCAC
ATGTCCGGGAGACACGAGGGGAAGCCGGACAGCGGCGACTAGACCAGGGG
GGGGTAAACGGCTCGGATGAACCACGCTTTTGCTGGCCAGCGGACGATGA
GCAGACGGGGGCCAACGGGTGGAGTCAATTGCAGGTGCTTGCTCTCTCTG
GGACGAGCGATAGAGACGAGCTTGTCGGAAGACCCCGATCTCACCGTACT
AGAGGACGACGTCGGTGATTTCTACTTCCAGCTGTTGACGGCGGGCGAAG
ACGCCGGCGGCAACGCATGGTCGGGTGGCGGCGTTCACCCACGGAGACGC
CAGCAGTCTCCTAGGACGGGGCCGGTGCGGGCTATCCACCACCAGGACTC
CCCGCTCCCCTGCTTCTCCGGGACCGGGATTGTGCGTCACCCCCCCGCCC
CCGCCGCCCAGCTTGGCGGTTCTGGCTTGCCGGTGGGGGTGGGCGACGAC
TCCGCCGGCGCTGAGAACGACAAACGCCTTAGTGTCTGGGGATCATCTGG
TGAAGGTCCCATCGCCGGAAGACTAGCTGCCGACGTTAGCGGCGGCGGCG
GCAGCAGCAGCGCGTTGTTGCTTTTCGGGGGTCGAAAGGAGTCCGATGTA
TGCGGGGGGGATGGTGGAGGTAACGGGAGCGCCGGCGGCGATGTCGGCCC
CCTGATGGACGCGTTCGGGCGGCAGGGCAGAGCCGACCTCGGGGTGGAGG
CGATGAGAAGGAGAGGCGCCGGCGGGGAACAAGAGCTGTCCGTGCTGGAC
GAGATACACGCCTGCTTGACCAGAGGAGAAGGCGGCGGCACGGGGAGGAG
CGCGGCTTCGTCCGCTGCCCGGGAGATCGGCATCCGAACGTCCATGTCGA
AAGGGAACCGGTGGGTGATCGGGAGGCGGCTTGCTGGGGAGAGCGGCAGC
GGCGGTAGAAGCCGCCTTGGGCATGAGTTGTATGCTACCATCGAGGCGCC
CGTTTTGTCCGTCGGGGACGCACGCGCCGCCGCTAGCAGGGTCTTTTCGG
GGGTAGCGTGTGACGGTCTCCCTGCCGGTGATGGCGCTGTCGCAGGCCAG
AGCGCTGGACCCGATCGATCGAGAGCGTCTGAGAGGGGGCTTGAGCGGCG
GCGTTTCCTGAGATAGCTGTATGCGGAAGAGGAAGAAAAAGGCGGAGTCT
CTCTCTTGCGCCCTCTCTCCCTCGCGAAGGCCCTCTATCCCCCCCTCTCT
CTCTCGCTCTAGACTGTCTTCGAAACTACGGGTGTTGTCGGTTGTTGACC
AGGTCGCTACATTTGCCGGCCCTGGGCTCGTATTAGCGTTGGGTGTGTTT
TCGGTCACACCATGAAGGTGGACATGGTTCTTGTGTCCCGCGAGGCGGCA
ACGGACGTGTCTTGGTTGCACCGATGGGTTACTTTGGGCGCAGGGATACA
TCCTCTGCACGCCTGTGCTGTGTGTCGCAAATGTTTGTAGTGGGTGCGTG
GTGCACACAAAGCGCATATTATTAAATAAGTTTTGTTCCTGGTGTTGCTT
TACACACATTGAAGATGTAGGATAAGTCTAACCAGAAATAGCTTGTGCGT
GTTCATGTCGTCCGCAGCCCCCCTTGGAGGGCCCACGTGATCCTGGTGTG
TGTGGGCGGGACGTAATATCCATTGATACATTTGCGTTTTGTTATCGTTC
GACCTTTTCTATGTTGCAGCAGCAGCAGCA back to topprotein sequence of EsuBft102_17a-0001 >EsuBft102_17 ID=EsuBft102_17|Name=EsuBft102_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=349bp
MNHAFAGQRTMSRRGPTGGVNCRCLLSLGRAIETSLSEDPDLTVLEDDVG
DFYFQLLTAGEDAGGNAWSGGGVHPRRRQQSPRTGPVRAIHHQDSPLPCF
SGTGIVRHPPAPAAQLGGSGLPVGVGDDSAGAENDKRLSVWGSSGEGPIA
GRLAADVSGGGGSSSALLLFGGRKESDVCGGDGGGNGSAGGDVGPLMDAF
GRQGRADLGVEAMRRRGAGGEQELSVLDEIHACLTRGEGGGTGRSAASSA
AREIGIRTSMSKGNRWVIGRRLAGESGSGGRSRLGHELYATIEAPVLSVG
DARAAASRVFSGVACDGLPAGDGAVAGQSAGPDRSRASERGLERRRFLR back to topmRNA from alignment at Scaffold_372:119043..121277+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft102_17a-0001 ID=EsuBft102_17a-0001|Name=EsuBft102_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2235bp|location=Sequence derived from alignment at Scaffold_372:119043..121277+ (Ectocarpus subulatus male Bft15b)
CGTCTTTGTTCTCTCTCTCGCACCAGATTGTGCCATCTGGGCCCCCGAAC
TCCACTACGGTGTTGCTGAACGCCCTGGGGTCACACGAGACAATCCAAGA
AACGAAGACGCGTTTGCGGGACGAGGCAGCACACCACAGGTGGCGACGTC
AGCAGCGGCGGTGGCTGCCGATGCGGCTTCTTGTACCGGTCCAGGTGGAA
ACTCCTCCCGGAGACGGCGGAGACGGCGAGTTGTGGCCTACGTGCGGGGC
GGCCTCTGCGCCCTCGTGGCCTTCCGTGAACGAGAGCGACGGTGCGGCGG
CACTGGTGCTGCTGCTGGCGGGGAGGAGGTGGCAACGGGCGACGACCCAC
ATGTCCGGGAGACACGAGGGGAAGCCGGACAGCGGCGACTAGACCAGGGG
GGGGTAAACGGCTCGGATGAACCACGCTTTTGCTGGCCAGCGGACGATGA
GCAGACGGGGGCCAACGGGTGGAGTCAATTGCAGGTGCGTCCGTAGTTCC
CAATCATCTGTCCAGGTGTATCGAAGTGCCCACCACAAGACGCTTGTATA
GCAGTCCTGTTTTGAATCGCGACCACCACCAACGGCCCTGTCTCGAAAGA
TATCCTTAGCCAACGGTCGAGTTACGTTCAAGGAAGCACCTACACCCCCC
TCCACCCCAAACGTGTGTTCACCGGGCCCATCGGCGCACGCAGTTGCTCT
CTCTGGGACGAGCGATAGAGACGAGCTTGTCGGAAGACCCCGATCTCACC
GTACTAGAGGACGACGTCGGTGATTTCTACTTCCAGCTGTTGACGGCGGG
CGAAGACGCCGGCGGCAACGCATGGTCGGGTGGCGGCGTTCACCCACGGA
GACGCCAGCAGTCTCCTAGGACGGGGCCGGTGCGGGCTATCCACCACCAG
GACTCCCCGCTCCCCTGCTTCTCCGGGACCGGGATTGTGCGTCACCCCCC
CGCCCCCGCCGCCCAGCTTGGCGGTTCTGGCTTGCCGGTGGGGGTGGGCG
ACGACTCCGCCGGCGCTGAGAACGACAAACGCCTTAGTGTCTGGGGATCA
TCTGGTGAAGGTCCCATCGCCGGAAGACTAGCTGCCGACGTTAGCGGCGG
CGGCGGCAGCAGCAGCGCGTTGTTGCTTTTCGGGGGTCGAAAGGAGTCCG
ATGTATGCGGGGGGGATGGTGGAGGTAACGGGAGCGCCGGCGGCGATGTC
GGCCCCCTGATGGACGCGTTCGGGCGGCAGGGCAGAGCCGACCTCGGGGT
GGAGGCGATGAGAAGGAGAGGCGCCGGCGGGGAACAAGAGCTGTCCGTGC
TGGACGAGATACACGCCTGCTTGACCAGAGGAGAAGGCGGCGGCACGGGG
AGGAGCGCGGCTTCGTCCGCTGCCCGGGAGATCGGCATCCGAACGTCCAT
GTCGAAAGGGAACCGGTGGGTGATCGGGAGGCGGCTTGCTGGGGAGAGCG
GCAGCGGCGGTAGAAGCCGCCTTGGGCATGAGTTGTATGCTACCATCGAG
GCGCCCGTTTTGTCCGTCGGGGACGCACGCGCCGCCGCTAGCAGGGTCTT
TTCGGGGGTAGCGTGTGACGGTCTCCCTGCCGGTGATGGCGCTGTCGCAG
GCCAGAGCGCTGGACCCGATCGATCGAGAGCGTCTGAGAGGGGGCTTGAG
CGGCGGCGTTTCCTGAGATAGCTGTATGCGGAAGAGGAAGAAAAAGGCGG
AGTCTCTCTCTTGCGCCCTCTCTCCCTCGCGAAGGCCCTCTATCCCCCCC
TCTCTCTCTCGCTCTAGACTGTCTTCGAAACTACGGGTGTTGTCGGTTGT
TGACCAGGTCGCTACATTTGCCGGCCCTGGGCTCGTATTAGCGTTGGGTG
TGTTTTCGGTCACACCATGAAGGTGGACATGGTTCTTGTGTCCCGCGAGG
CGGCAACGGACGTGTCTTGGTTGCACCGATGGGTTACTTTGGGCGCAGGG
ATACATCCTCTGCACGCCTGTGCTGTGTGTCGCAAATGTTTGTAGTGGGT
GCGTGGTGCACACAAAGCGCATATTATTAAATAAGTTTTGTTCCTGGTGT
TGCTTTACACACATTGAAGATGTAGGATAAGTCTAACCAGAAATAGCTTG
TGCGTGTTCATGTCGTCCGCAGCCCCCCTTGGAGGGCCCACGTGATCCTG
GTGTGTGTGGGCGGGACGTAATATCCATTGATACATTTGCGTTTTGTTAT
CGTTCGACCTTTTCTATGTTGCAGCAGCAGCAGCA back to topCoding sequence (CDS) from alignment at Scaffold_372:119043..121277+ >EsuBft102_17a-0001 ID=EsuBft102_17a-0001|Name=EsuBft102_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1050bp|location=Sequence derived from alignment at Scaffold_372:119043..121277+ (Ectocarpus subulatus male Bft15b)
ATGAACCACGCTTTTGCTGGCCAGCGGACGATGAGCAGACGGGGGCCAAC
GGGTGGAGTCAATTGCAGGTGCTTGCTCTCTCTGGGACGAGCGATAGAGA
CGAGCTTGTCGGAAGACCCCGATCTCACCGTACTAGAGGACGACGTCGGT
GATTTCTACTTCCAGCTGTTGACGGCGGGCGAAGACGCCGGCGGCAACGC
ATGGTCGGGTGGCGGCGTTCACCCACGGAGACGCCAGCAGTCTCCTAGGA
CGGGGCCGGTGCGGGCTATCCACCACCAGGACTCCCCGCTCCCCTGCTTC
TCCGGGACCGGGATTGTGCGTCACCCCCCCGCCCCCGCCGCCCAGCTTGG
CGGTTCTGGCTTGCCGGTGGGGGTGGGCGACGACTCCGCCGGCGCTGAGA
ACGACAAACGCCTTAGTGTCTGGGGATCATCTGGTGAAGGTCCCATCGCC
GGAAGACTAGCTGCCGACGTTAGCGGCGGCGGCGGCAGCAGCAGCGCGTT
GTTGCTTTTCGGGGGTCGAAAGGAGTCCGATGTATGCGGGGGGGATGGTG
GAGGTAACGGGAGCGCCGGCGGCGATGTCGGCCCCCTGATGGACGCGTTC
GGGCGGCAGGGCAGAGCCGACCTCGGGGTGGAGGCGATGAGAAGGAGAGG
CGCCGGCGGGGAACAAGAGCTGTCCGTGCTGGACGAGATACACGCCTGCT
TGACCAGAGGAGAAGGCGGCGGCACGGGGAGGAGCGCGGCTTCGTCCGCT
GCCCGGGAGATCGGCATCCGAACGTCCATGTCGAAAGGGAACCGGTGGGT
GATCGGGAGGCGGCTTGCTGGGGAGAGCGGCAGCGGCGGTAGAAGCCGCC
TTGGGCATGAGTTGTATGCTACCATCGAGGCGCCCGTTTTGTCCGTCGGG
GACGCACGCGCCGCCGCTAGCAGGGTCTTTTCGGGGGTAGCGTGTGACGG
TCTCCCTGCCGGTGATGGCGCTGTCGCAGGCCAGAGCGCTGGACCCGATC
GATCGAGAGCGTCTGAGAGGGGGCTTGAGCGGCGGCGTTTCCTGAGATAG back to top
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