EsuBft102_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft102_17a-0001
Unique Name	EsuBft102_17a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_372	contig	Scaffold_372:119043..121277 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft102_17
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	203
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-22_000990.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft102_17a	EsuBft102_17a	Ectocarpus subulatus male Bft15b	gene	Scaffold_372 119043..121277 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft102_17a-0001-exon	agat-exon-4601	Ectocarpus subulatus male Bft15b	exon	Scaffold_372 119043..119530 +
EsuBft102_17a-0001-exon	EsuBft102_17a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_372 119736..121277 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft102_17a-0001-exon	agat-five_prime_utr-173	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_372 119043..119458 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft102_17a-0001-cds	EsuBft102_17a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_372 119459..119530 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft102_17a-0001-exon	agat-three_prime_utr-289	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_372 120714..121277 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft102_17a-0001	EsuBft102_17	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_372 119459..120713 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_372:119043..121277+
coding sequence from alignment at Scaffold_372:119043..121277+

spliced messenger RNA

>EsuBft102_17a-0001 ID=EsuBft102_17a-0001|Name=EsuBft102_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2030bp|location=Sequence derived from alignment at Scaffold_372:119043..121277+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGTCTTTGTTCTCTCTCTCGCACCAGATTGTGCCATCTGGGCCCCCGAAC
TCCACTACGGTGTTGCTGAACGCCCTGGGGTCACACGAGACAATCCAAGA
AACGAAGACGCGTTTGCGGGACGAGGCAGCACACCACAGGTGGCGACGTC
AGCAGCGGCGGTGGCTGCCGATGCGGCTTCTTGTACCGGTCCAGGTGGAA
ACTCCTCCCGGAGACGGCGGAGACGGCGAGTTGTGGCCTACGTGCGGGGC
GGCCTCTGCGCCCTCGTGGCCTTCCGTGAACGAGAGCGACGGTGCGGCGG
CACTGGTGCTGCTGCTGGCGGGGAGGAGGTGGCAACGGGCGACGACCCAC
ATGTCCGGGAGACACGAGGGGAAGCCGGACAGCGGCGACTAGACCAGGGG
GGGGTAAACGGCTCGGATGAACCACGCTTTTGCTGGCCAGCGGACGATGA
GCAGACGGGGGCCAACGGGTGGAGTCAATTGCAGGTGCTTGCTCTCTCTG
GGACGAGCGATAGAGACGAGCTTGTCGGAAGACCCCGATCTCACCGTACT
AGAGGACGACGTCGGTGATTTCTACTTCCAGCTGTTGACGGCGGGCGAAG
ACGCCGGCGGCAACGCATGGTCGGGTGGCGGCGTTCACCCACGGAGACGC
CAGCAGTCTCCTAGGACGGGGCCGGTGCGGGCTATCCACCACCAGGACTC
CCCGCTCCCCTGCTTCTCCGGGACCGGGATTGTGCGTCACCCCCCCGCCC
CCGCCGCCCAGCTTGGCGGTTCTGGCTTGCCGGTGGGGGTGGGCGACGAC
TCCGCCGGCGCTGAGAACGACAAACGCCTTAGTGTCTGGGGATCATCTGG
TGAAGGTCCCATCGCCGGAAGACTAGCTGCCGACGTTAGCGGCGGCGGCG
GCAGCAGCAGCGCGTTGTTGCTTTTCGGGGGTCGAAAGGAGTCCGATGTA
TGCGGGGGGGATGGTGGAGGTAACGGGAGCGCCGGCGGCGATGTCGGCCC
CCTGATGGACGCGTTCGGGCGGCAGGGCAGAGCCGACCTCGGGGTGGAGG
CGATGAGAAGGAGAGGCGCCGGCGGGGAACAAGAGCTGTCCGTGCTGGAC
GAGATACACGCCTGCTTGACCAGAGGAGAAGGCGGCGGCACGGGGAGGAG
CGCGGCTTCGTCCGCTGCCCGGGAGATCGGCATCCGAACGTCCATGTCGA
AAGGGAACCGGTGGGTGATCGGGAGGCGGCTTGCTGGGGAGAGCGGCAGC
GGCGGTAGAAGCCGCCTTGGGCATGAGTTGTATGCTACCATCGAGGCGCC
CGTTTTGTCCGTCGGGGACGCACGCGCCGCCGCTAGCAGGGTCTTTTCGG
GGGTAGCGTGTGACGGTCTCCCTGCCGGTGATGGCGCTGTCGCAGGCCAG
AGCGCTGGACCCGATCGATCGAGAGCGTCTGAGAGGGGGCTTGAGCGGCG
GCGTTTCCTGAGATAGCTGTATGCGGAAGAGGAAGAAAAAGGCGGAGTCT
CTCTCTTGCGCCCTCTCTCCCTCGCGAAGGCCCTCTATCCCCCCCTCTCT
CTCTCGCTCTAGACTGTCTTCGAAACTACGGGTGTTGTCGGTTGTTGACC
AGGTCGCTACATTTGCCGGCCCTGGGCTCGTATTAGCGTTGGGTGTGTTT
TCGGTCACACCATGAAGGTGGACATGGTTCTTGTGTCCCGCGAGGCGGCA
ACGGACGTGTCTTGGTTGCACCGATGGGTTACTTTGGGCGCAGGGATACA
TCCTCTGCACGCCTGTGCTGTGTGTCGCAAATGTTTGTAGTGGGTGCGTG
GTGCACACAAAGCGCATATTATTAAATAAGTTTTGTTCCTGGTGTTGCTT
TACACACATTGAAGATGTAGGATAAGTCTAACCAGAAATAGCTTGTGCGT
GTTCATGTCGTCCGCAGCCCCCCTTGGAGGGCCCACGTGATCCTGGTGTG
TGTGGGCGGGACGTAATATCCATTGATACATTTGCGTTTTGTTATCGTTC
GACCTTTTCTATGTTGCAGCAGCAGCAGCA

protein sequence of EsuBft102_17a-0001

>EsuBft102_17 ID=EsuBft102_17|Name=EsuBft102_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=349bp
MNHAFAGQRTMSRRGPTGGVNCRCLLSLGRAIETSLSEDPDLTVLEDDVG
DFYFQLLTAGEDAGGNAWSGGGVHPRRRQQSPRTGPVRAIHHQDSPLPCF
SGTGIVRHPPAPAAQLGGSGLPVGVGDDSAGAENDKRLSVWGSSGEGPIA
GRLAADVSGGGGSSSALLLFGGRKESDVCGGDGGGNGSAGGDVGPLMDAF
GRQGRADLGVEAMRRRGAGGEQELSVLDEIHACLTRGEGGGTGRSAASSA
AREIGIRTSMSKGNRWVIGRRLAGESGSGGRSRLGHELYATIEAPVLSVG
DARAAASRVFSGVACDGLPAGDGAVAGQSAGPDRSRASERGLERRRFLR

mRNA from alignment at Scaffold_372:119043..121277+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft102_17a-0001 ID=EsuBft102_17a-0001|Name=EsuBft102_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2235bp|location=Sequence derived from alignment at Scaffold_372:119043..121277+ (Ectocarpus subulatus male Bft15b)
CGTCTTTGTTCTCTCTCTCGCACCAGATTGTGCCATCTGGGCCCCCGAAC
TCCACTACGGTGTTGCTGAACGCCCTGGGGTCACACGAGACAATCCAAGA
AACGAAGACGCGTTTGCGGGACGAGGCAGCACACCACAGGTGGCGACGTC
AGCAGCGGCGGTGGCTGCCGATGCGGCTTCTTGTACCGGTCCAGGTGGAA
ACTCCTCCCGGAGACGGCGGAGACGGCGAGTTGTGGCCTACGTGCGGGGC
GGCCTCTGCGCCCTCGTGGCCTTCCGTGAACGAGAGCGACGGTGCGGCGG
CACTGGTGCTGCTGCTGGCGGGGAGGAGGTGGCAACGGGCGACGACCCAC
ATGTCCGGGAGACACGAGGGGAAGCCGGACAGCGGCGACTAGACCAGGGG
GGGGTAAACGGCTCGGATGAACCACGCTTTTGCTGGCCAGCGGACGATGA
GCAGACGGGGGCCAACGGGTGGAGTCAATTGCAGGTGCGTCCGTAGTTCC
CAATCATCTGTCCAGGTGTATCGAAGTGCCCACCACAAGACGCTTGTATA
GCAGTCCTGTTTTGAATCGCGACCACCACCAACGGCCCTGTCTCGAAAGA
TATCCTTAGCCAACGGTCGAGTTACGTTCAAGGAAGCACCTACACCCCCC
TCCACCCCAAACGTGTGTTCACCGGGCCCATCGGCGCACGCAGTTGCTCT
CTCTGGGACGAGCGATAGAGACGAGCTTGTCGGAAGACCCCGATCTCACC
GTACTAGAGGACGACGTCGGTGATTTCTACTTCCAGCTGTTGACGGCGGG
CGAAGACGCCGGCGGCAACGCATGGTCGGGTGGCGGCGTTCACCCACGGA
GACGCCAGCAGTCTCCTAGGACGGGGCCGGTGCGGGCTATCCACCACCAG
GACTCCCCGCTCCCCTGCTTCTCCGGGACCGGGATTGTGCGTCACCCCCC
CGCCCCCGCCGCCCAGCTTGGCGGTTCTGGCTTGCCGGTGGGGGTGGGCG
ACGACTCCGCCGGCGCTGAGAACGACAAACGCCTTAGTGTCTGGGGATCA
TCTGGTGAAGGTCCCATCGCCGGAAGACTAGCTGCCGACGTTAGCGGCGG
CGGCGGCAGCAGCAGCGCGTTGTTGCTTTTCGGGGGTCGAAAGGAGTCCG
ATGTATGCGGGGGGGATGGTGGAGGTAACGGGAGCGCCGGCGGCGATGTC
GGCCCCCTGATGGACGCGTTCGGGCGGCAGGGCAGAGCCGACCTCGGGGT
GGAGGCGATGAGAAGGAGAGGCGCCGGCGGGGAACAAGAGCTGTCCGTGC
TGGACGAGATACACGCCTGCTTGACCAGAGGAGAAGGCGGCGGCACGGGG
AGGAGCGCGGCTTCGTCCGCTGCCCGGGAGATCGGCATCCGAACGTCCAT
GTCGAAAGGGAACCGGTGGGTGATCGGGAGGCGGCTTGCTGGGGAGAGCG
GCAGCGGCGGTAGAAGCCGCCTTGGGCATGAGTTGTATGCTACCATCGAG
GCGCCCGTTTTGTCCGTCGGGGACGCACGCGCCGCCGCTAGCAGGGTCTT
TTCGGGGGTAGCGTGTGACGGTCTCCCTGCCGGTGATGGCGCTGTCGCAG
GCCAGAGCGCTGGACCCGATCGATCGAGAGCGTCTGAGAGGGGGCTTGAG
CGGCGGCGTTTCCTGAGATAGCTGTATGCGGAAGAGGAAGAAAAAGGCGG
AGTCTCTCTCTTGCGCCCTCTCTCCCTCGCGAAGGCCCTCTATCCCCCCC
TCTCTCTCTCGCTCTAGACTGTCTTCGAAACTACGGGTGTTGTCGGTTGT
TGACCAGGTCGCTACATTTGCCGGCCCTGGGCTCGTATTAGCGTTGGGTG
TGTTTTCGGTCACACCATGAAGGTGGACATGGTTCTTGTGTCCCGCGAGG
CGGCAACGGACGTGTCTTGGTTGCACCGATGGGTTACTTTGGGCGCAGGG
ATACATCCTCTGCACGCCTGTGCTGTGTGTCGCAAATGTTTGTAGTGGGT
GCGTGGTGCACACAAAGCGCATATTATTAAATAAGTTTTGTTCCTGGTGT
TGCTTTACACACATTGAAGATGTAGGATAAGTCTAACCAGAAATAGCTTG
TGCGTGTTCATGTCGTCCGCAGCCCCCCTTGGAGGGCCCACGTGATCCTG
GTGTGTGTGGGCGGGACGTAATATCCATTGATACATTTGCGTTTTGTTAT
CGTTCGACCTTTTCTATGTTGCAGCAGCAGCAGCA

Coding sequence (CDS) from alignment at Scaffold_372:119043..121277+

>EsuBft102_17a-0001 ID=EsuBft102_17a-0001|Name=EsuBft102_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1050bp|location=Sequence derived from alignment at Scaffold_372:119043..121277+ (Ectocarpus subulatus male Bft15b)
ATGAACCACGCTTTTGCTGGCCAGCGGACGATGAGCAGACGGGGGCCAAC
GGGTGGAGTCAATTGCAGGTGCTTGCTCTCTCTGGGACGAGCGATAGAGA
CGAGCTTGTCGGAAGACCCCGATCTCACCGTACTAGAGGACGACGTCGGT
GATTTCTACTTCCAGCTGTTGACGGCGGGCGAAGACGCCGGCGGCAACGC
ATGGTCGGGTGGCGGCGTTCACCCACGGAGACGCCAGCAGTCTCCTAGGA
CGGGGCCGGTGCGGGCTATCCACCACCAGGACTCCCCGCTCCCCTGCTTC
TCCGGGACCGGGATTGTGCGTCACCCCCCCGCCCCCGCCGCCCAGCTTGG
CGGTTCTGGCTTGCCGGTGGGGGTGGGCGACGACTCCGCCGGCGCTGAGA
ACGACAAACGCCTTAGTGTCTGGGGATCATCTGGTGAAGGTCCCATCGCC
GGAAGACTAGCTGCCGACGTTAGCGGCGGCGGCGGCAGCAGCAGCGCGTT
GTTGCTTTTCGGGGGTCGAAAGGAGTCCGATGTATGCGGGGGGGATGGTG
GAGGTAACGGGAGCGCCGGCGGCGATGTCGGCCCCCTGATGGACGCGTTC
GGGCGGCAGGGCAGAGCCGACCTCGGGGTGGAGGCGATGAGAAGGAGAGG
CGCCGGCGGGGAACAAGAGCTGTCCGTGCTGGACGAGATACACGCCTGCT
TGACCAGAGGAGAAGGCGGCGGCACGGGGAGGAGCGCGGCTTCGTCCGCT
GCCCGGGAGATCGGCATCCGAACGTCCATGTCGAAAGGGAACCGGTGGGT
GATCGGGAGGCGGCTTGCTGGGGAGAGCGGCAGCGGCGGTAGAAGCCGCC
TTGGGCATGAGTTGTATGCTACCATCGAGGCGCCCGTTTTGTCCGTCGGG
GACGCACGCGCCGCCGCTAGCAGGGTCTTTTCGGGGGTAGCGTGTGACGG
TCTCCCTGCCGGTGATGGCGCTGTCGCAGGCCAGAGCGCTGGACCCGATC
GATCGAGAGCGTCTGAGAGGGGGCTTGAGCGGCGGCGTTTCCTGAGATAG