EsuBft982_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft982_2a-0001
Unique NameEsuBft982_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_360contigScaffold_360:417906..422358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LF87
ProteomeIdEsuBft982_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsPTHR12546
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length103
Hectar predicted targeting categoryother localisation
Evalue1.49e-171
EggNOG OGsKOG1030@1|root,KOG1326@1|root,KOG1030@2759|Eukaryota,KOG1326@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K19949,ko:K22125,ko:K22127
Descriptionplasma membrane repair
COG categoryS
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft982_2aEsuBft982_2aEctocarpus subulatus male Bft15bgeneScaffold_360 417906..422358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_2a-0001EsuBft982_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_360 417926..422326 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_2a-0001-exonagat-exon-72919Ectocarpus subulatus male Bft15bexonScaffold_360 417906..417991 +
EsuBft982_2a-0001-exonagat-exon-72917Ectocarpus subulatus male Bft15bexonScaffold_360 418935..419087 +
EsuBft982_2a-0001-exonagat-exon-72918Ectocarpus subulatus male Bft15bexonScaffold_360 419682..419870 +
EsuBft982_2a-0001-exonEsuBft982_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_360 420350..420622 +
EsuBft982_2a-0001-exonagat-exon-72916Ectocarpus subulatus male Bft15bexonScaffold_360 422030..422358 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_2a-0001-exonagat-five_prime_utr-15481Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_360 417906..417925 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_2a-0001-cdsEsuBft982_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_360 417926..417991 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_2a-0001-exonagat-three_prime_utr-23767Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_360 422327..422358 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft982_2a-0001 ID=EsuBft982_2a-0001|Name=EsuBft982_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1030bp|location=Sequence derived from alignment at Scaffold_360:417906..422358+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGGGCTCTTTCAACTGGCGGATGAAGTTCAAGGTCTCGCTCGGCCCCCGC
ACAAGGGCGTGGAAGTTCCCGTACCTGACCGTGCAGCTGTGGGACCGAGA
CTTGTTCAAGTTCAACGACCACATCGCCGAGGGCCAGCTGGACCTCGGTC
CGTACTTCATCAAGGCCTACAAGACCTCTGAAACCGTCAAGCTCTTCCCC
ACCCTCGACCCCAAGCTAGAGGCCATGCGAAAGGCGGATGTGGGGAACAT
GGACGTGGACGCCGCGCTGGAGGGGAACGATGCTGCGAAGGAGCGCCTCT
TGGCGGGACTCGAGAGCGGCCCCGCGGCGTACGACCCGGAGAGGGGGGAG
AGGCCGCCGCCCCCCGCGTACAACAACGTTACCTCGAATGGGTCGGAGAT
CGTCGGCGGCGTTAACAACCTCTACGAGGGAGTCAACGGCGTCGCCCCTG
CTGCCAACGGCGGCGTAGTCCCGGAAAGAAGGAAGAAGAAGAAAAAGAAA
GGCTGCTGCGCTTTGATCTGCAAGTGTTGTTGCCCTTGGAAGAGCGTGGC
CGCCCGTGTGGAGCCGGGGGACTCGTCGGACGAGGACGAGGAGGCCAAGG
CCGACGCTAAGGCGTTCGTCAACACGATCAAGAACATGACGGGGCTGTGG
GACGACGACCCGGACGAGGCAAGAAAAGAAGAAAAATATAGAATAGAGGA
AGAACAAATGGGCAAGTGCTTGATGGGCGTCCAGATTTGGCCCATCGAGA
AGGCGGAGCTGCAGCCGGTCGGCAACGGCCGCAATGATCCCAACAGCCAG
CCCTTCCTGCCCCCGCCGGCGGGGCGCCTGCGGTTCAGCCTGAACCCCTT
CGTGATGGGGTCGGAGCTATTCGGGCCGAAGATCTGCGCCAAGATCGCGT
GCGTGTGCTGTTGCGTGATCAGCATCCTGCTCCTCGTATACTTCAGCGGG
TTCTTCAACCTGCTCCTCACGTTCGCGCTTAGCCTCATCACTAACTAAAG
CGAGCGGCGTTCGTTGTTGTCGGTGTTGTT
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protein sequence of EsuBft982_2a-0001

>EsuBft982_2 ID=EsuBft982_2|Name=EsuBft982_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=325bp
MKFKVSLGPRTRAWKFPYLTVQLWDRDLFKFNDHIAEGQLDLGPYFIKAY
KTSETVKLFPTLDPKLEAMRKADVGNMDVDAALEGNDAAKERLLAGLESG
PAAYDPERGERPPPPAYNNVTSNGSEIVGGVNNLYEGVNGVAPAANGGVV
PERRKKKKKKGCCALICKCCCPWKSVAARVEPGDSSDEDEEAKADAKAFV
NTIKNMTGLWDDDPDEARKEEKYRIEEEQMGKCLMGVQIWPIEKAELQPV
GNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVI
SILLLVYFSGFFNLLLTFALSLITN
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mRNA from alignment at Scaffold_360:417906..422358+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft982_2a-0001 ID=EsuBft982_2a-0001|Name=EsuBft982_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4453bp|location=Sequence derived from alignment at Scaffold_360:417906..422358+ (Ectocarpus subulatus male Bft15b)
AGGGCTCTTTCAACTGGCGGATGAAGTTCAAGGTCTCGCTCGGCCCCCGC
ACAAGGGCGTGGAAGTTCCCGTACCTGACCGTGCAGGTGATTTTGGTTCG
CCCCATATATTGTTTGCCATATTTTTTGCGGGTTTTGCTGCAGGTTTGAT
TTATGTCTTGTCTTCGTTGATTTTGGTGGTGACGTCGCTCGAAGTTTGTG
AAAAGCGGTCGCTGCCTCCCTGCCTGCCCCTGACGCTCACGTCACTCTGC
AGCAGCACCGGGCGGAACTGCCGTTGAGGTTGTGGATTGGATGGGTTTCC
CTGCTGTTTTTGGGCGTGTTTGCTTGCTGGCTGTCGTGCTGGTTGCTGAG
GCTGCGTCTCTCGCGGGGATATACTAGGCTTCGGCCTCCTCTCACGTCGT
GTTGTTTGGTGTCGATTGAGAACGTACACAAGATGTTTGAACAAATCATA
CTGTCGTAGAGTGAGCTTGACGTGACCTGCATGCCTTTTGATTGACCCTG
TCTGCCGGAGGCTGGCCATGGTATTTCTGGGATCCCATGCTACTCGTGGT
ATATGTCTGCGTGGGCGACTGCTGGGTCTCGATCTATCCCACTATTGTTT
CGTAGCTCCGATTTCCGCCGCTCCCGACTGGAGCGTGCTCCAGTGGCTAT
TGTGAAACTGGCAGTAGACTACCGTCATTGGGTCGTTTGCACTTCTTCCC
CTACCCCTTTCCGTCTACCTCGCTCTCGCGGTAAATACAGCAGTACCCGT
AGCGCTATAAGGATGCGGTACACCGGGGTTGTCATGATGTCATGATGCTA
CGATTTATTTTTCTCCATGCAGATAACTGTGAAGTCTTTGTGCACTCACC
CACATCATCCTCTCTCTTGTCCTTGTCTGTCTCTTTCTGCCGCACGTGTG
CGTCCAGCATATTACATTGATCTCTGACCGCCGTACTCCAATCCCATGTT
TCATTGAAGCTCACTCTAGCCGCTCCCCGCCCTATAACCCACACACCTCT
TTCTTTCCCTTTTTTCTTTCGTGGTCCAGCTGTGGGACCGAGACTTGTTC
AAGTTCAACGACCACATCGCCGAGGGCCAGCTGGACCTCGGTCCGTACTT
CATCAAGGCCTACAAGACCTCTGAAACCGTCAAGCTCTTCCCCACCCTCG
ACCCCAAGCTAGAGGCCATGCGAAAGGCGGATGTAAGCATACATCTGTAC
ACGCGGAATGGGTCTGCGTTTGTTGCTGTTGCTAGTGCTCCTTCATGTTG
TTGTTGTTGTCATCTTGAAATCGAAAAACCGTTCCGGTCTCTGCTCAGTA
CCTGCTAGCATCACCTGTTCGTTGTGGTAAGAATTAAAATCGATCACCGA
TGGCGTGTACAGTAATTTAGAGCTGGAGACGCCGTCGTCGGAAAAGACGG
AAACGAATGGCATTTTTTTTTTGTAAACCAGCGAAACAAGAATGCCTCCG
TTTACCAAGAAGAATACGACTTTGTGTGGGGAACACTTGCGTTCGTCCAC
TGCTTCTGCGTAACGCTGAGCTTGTTCCCGGCTTGTGCGTGTGTGTGTGT
TGCGATATAGTTTGCTTCCACCCGCATGTTTTTTTTTGTGATTTTTTTTA
CACATAGCAGCAGCACAAAGAAGTGTGGACCGTAAGTCGTTTGGGGATTG
GGTAGAGGACGGCGGGGGCTGACGTTTTTCTTTTTTCGTTTGATGGTCTG
TCAATCTGTCTGTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCATCGGCC
GGTCGGTGTCCTTGCTCTCTCCGCAGGTGGGGAACATGGACGTGGACGCC
GCGCTGGAGGGGAACGATGCTGCGAAGGAGCGCCTCTTGGCGGGACTCGA
GAGCGGCCCCGCGGCGTACGACCCGGAGAGGGGGGAGAGGCCGCCGCCCC
CCGCGTACAACAACGTTACCTCGAATGGGTCGGAGATCGTCGGCGGCGTT
AACAACCTCTACGAGGTGAGAATGACAAAAAAAAAAGAAACGTTTTTTTT
TTTTCTATTGACATAACAATGAGAAGCGTGAGACGCCGGGAGCGGTGATA
GGATTTGACAGCAATGCATCGTGTTTTCATTCTTTTTCTTTTTTCCTTTT
AATGTTTTTGTTTTCTTATGTTTGATCGTGAAGATTGTATGAACGAGCAG
CGGATGAGACAGGGTGTGTTGGCTACCTGTATGTTCCTTACTTGAGGCTT
TAGAGGAGATACCTTTGTGATAGTACATGTACAAGGTACACCGTAAAATA
CGGAGGTGGCGTGCGGAACTGCTGTAGACGTAGGTTGACCTCGTACAAGA
CGCACCCTTCAGCGTGAGGTACTGCAACAACAACCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNCCCCCCCCCCCCCCCC
GTTCCATGACTACTTTCCAGGGGAGCCCTGTTCCAGACCAGCAGGGAGTC
AACGGCGTCGCCCCTGCTGCCAACGGCGGCGTAGTCCCGGAAAGAAGGAA
GAAGAAGAAAAAGAAAGGCTGCTGCGCTTTGATCTGCAAGTGTTGTTGCC
CTTGGAAGAGCGTGGCCGCCCGTGTGGAGCCGGGGGACTCGTCGGACGAG
GACGAGGAGGCCAAGGCCGACGCTAAGGCGTTCGTCAACACGATCAAGAA
CATGACGGGGCTGTGGGACGACGACCCGGACGAGGCAAGAAAAGAAGAAA
AATATAGAATAGAGGAAGTTTTATCTTTGCCTTTATTGTTGTTTCGAAAG
CACAGCGAGTTTTCGATTTCTGTTTCGTGTTTCTTTAATAGCAGGGCACA
GGCTAGGCTTCCCTCGCTATTGGTGGAGATGGCGCTTTTGTTTGTGCACC
AATGGTTGCGTCTCACTCGGAAACGATGGTGGCCCCACAGCACCATCAGT
AAAGCACCATGAAGGACAGGAACGGTATCAGCCAGAGTAGCCCACGTCAA
ACGTGGCATAAAACATCCACCCTCCCGTGACTGTTGCTTGTGTTCCCATG
AAGAGCGAGGTCCGTTTTGTCGTTCTGAACGGAATGCGTGGTTGATGGTC
ACAGGACCCAAGAGCGAGTACTATTTTTACAGTAGTACTAACAAACGACC
ACCGCCCCCACACTTGCTCCCTCCCCCCCTCCNNNNNNNNNNNNNNNNNN
NNNNNNNNTGCCCCCCCCCCCCCCCCCCCCCCCCCCAAACCTTTTCATCA
GAGCTATTGGCTTAACATGGAAAGGACCAACTACGCGACCGGTCAGAAAG
TGAGTATCAGTACGAGCGGGCTCGTTCGTCGCATGTTTTAGCGTTGTAGC
TGAGAGACGGCTGAATTTGTTTTTCTTGTTGAGAAACGCCGCAGCATGAA
GTCTAGGTTGAGTTCTAGTGAAGTTGAAATGGGTATTTTTGGTGGGCTGA
ATGATGTGTCGGCGTGTGCGCCGTACAGCGTTTGTGCATCAGTGCTATTG
CTGTTCTTCTTGTTCTTTTCTCCGTCGGGCGCCCTAGTTGGGTTTTTGCT
TTGGCCTATCAAAGCTCTCGCCTACGGATGCGGGTTCATTATGATTATGA
CATGCACTTGATGGATCCATGTGGTGTTGGGTCTTAAGACGGACTCTCCC
CCTTTTGCATGTGCTCACACGTGATTCCAGCCCTCTTTTTGTTCTGCTAA
GAGATTTTTTTCTCTCGTCGTTTCTTCCCTTTTCGGCATGGATTTTGATG
TTGGGTCATTCTTGTCCATCTTCCTCGTTCCCTCCTCTCCTCTCCTGTTC
TTTTGTCTTGCGGTGTGCTGCTCGCGTGCACACACATACATCATGACGCT
CACGGGGCCCTGAGATCATGGCCGAAGAGGCATTTTGTGCTTTCAACCGC
ACTGAGACTGGCGTATTTTCATTGGTCAGCCGTTTAGCGCGGTCGATGCT
AATGGGAAAGAAAATAAACACACACAGCAGTTAATGACATTTAGAAGTGT
TTTGTGTTTTTAAACCGCACTGAGACTGACGCCTTTTCATTGGTCAGCCG
ATTAGCGCGGTCGATGCTAACAATAAAGACACAAACACACACACCACCCC
CGAAACCAGTACACACACACCCATATCCCCCCCGCGTGCACACGCCCACC
CCGGCCCCGCGCACGCACGCACAGGAACAAATGGGCAAGTGCTTGATGGG
CGTCCAGATTTGGCCCATCGAGAAGGCGGAGCTGCAGCCGGTCGGCAACG
GCCGCAATGATCCCAACAGCCAGCCCTTCCTGCCCCCGCCGGCGGGGCGC
CTGCGGTTCAGCCTGAACCCCTTCGTGATGGGGTCGGAGCTATTCGGGCC
GAAGATCTGCGCCAAGATCGCGTGCGTGTGCTGTTGCGTGATCAGCATCC
TGCTCCTCGTATACTTCAGCGGGTTCTTCAACCTGCTCCTCACGTTCGCG
CTTAGCCTCATCACTAACTAAAGCGAGCGGCGTTCGTTGTTGTCGGTGTT
GTT
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Coding sequence (CDS) from alignment at Scaffold_360:417906..422358+

>EsuBft982_2a-0001 ID=EsuBft982_2a-0001|Name=EsuBft982_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=978bp|location=Sequence derived from alignment at Scaffold_360:417906..422358+ (Ectocarpus subulatus male Bft15b)
ATGAAGTTCAAGGTCTCGCTCGGCCCCCGCACAAGGGCGTGGAAGTTCCC
GTACCTGACCGTGCAGCTGTGGGACCGAGACTTGTTCAAGTTCAACGACC
ACATCGCCGAGGGCCAGCTGGACCTCGGTCCGTACTTCATCAAGGCCTAC
AAGACCTCTGAAACCGTCAAGCTCTTCCCCACCCTCGACCCCAAGCTAGA
GGCCATGCGAAAGGCGGATGTGGGGAACATGGACGTGGACGCCGCGCTGG
AGGGGAACGATGCTGCGAAGGAGCGCCTCTTGGCGGGACTCGAGAGCGGC
CCCGCGGCGTACGACCCGGAGAGGGGGGAGAGGCCGCCGCCCCCCGCGTA
CAACAACGTTACCTCGAATGGGTCGGAGATCGTCGGCGGCGTTAACAACC
TCTACGAGGGAGTCAACGGCGTCGCCCCTGCTGCCAACGGCGGCGTAGTC
CCGGAAAGAAGGAAGAAGAAGAAAAAGAAAGGCTGCTGCGCTTTGATCTG
CAAGTGTTGTTGCCCTTGGAAGAGCGTGGCCGCCCGTGTGGAGCCGGGGG
ACTCGTCGGACGAGGACGAGGAGGCCAAGGCCGACGCTAAGGCGTTCGTC
AACACGATCAAGAACATGACGGGGCTGTGGGACGACGACCCGGACGAGGC
AAGAAAAGAAGAAAAATATAGAATAGAGGAAGAACAAATGGGCAAGTGCT
TGATGGGCGTCCAGATTTGGCCCATCGAGAAGGCGGAGCTGCAGCCGGTC
GGCAACGGCCGCAATGATCCCAACAGCCAGCCCTTCCTGCCCCCGCCGGC
GGGGCGCCTGCGGTTCAGCCTGAACCCCTTCGTGATGGGGTCGGAGCTAT
TCGGGCCGAAGATCTGCGCCAAGATCGCGTGCGTGTGCTGTTGCGTGATC
AGCATCCTGCTCCTCGTATACTTCAGCGGGTTCTTCAACCTGCTCCTCAC
GTTCGCGCTTAGCCTCATCACTAACTAA
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