Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LF87 |
| ProteomeId | EsuBft982_2 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | TMhelix |
| Protein domains | PTHR12546 |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 5 |
| Max annot lvl | 2759|Eukaryota |
| Length | 103 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.49e-171 |
| EggNOG OGs | KOG1030@1|root,KOG1326@1|root,KOG1030@2759|Eukaryota,KOG1326@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K19949,ko:K22125,ko:K22127 |
| Description | plasma membrane repair |
| COG category | S |
| BRITE | ko00000,ko04131 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft982_2a-0001 ID=EsuBft982_2a-0001|Name=EsuBft982_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1030bp|location=Sequence derived from alignment at Scaffold_360:417906..422358+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AGGGCTCTTTCAACTGGCGGATGAAGTTCAAGGTCTCGCTCGGCCCCCGC
ACAAGGGCGTGGAAGTTCCCGTACCTGACCGTGCAGCTGTGGGACCGAGA
CTTGTTCAAGTTCAACGACCACATCGCCGAGGGCCAGCTGGACCTCGGTC
CGTACTTCATCAAGGCCTACAAGACCTCTGAAACCGTCAAGCTCTTCCCC
ACCCTCGACCCCAAGCTAGAGGCCATGCGAAAGGCGGATGTGGGGAACAT
GGACGTGGACGCCGCGCTGGAGGGGAACGATGCTGCGAAGGAGCGCCTCT
TGGCGGGACTCGAGAGCGGCCCCGCGGCGTACGACCCGGAGAGGGGGGAG
AGGCCGCCGCCCCCCGCGTACAACAACGTTACCTCGAATGGGTCGGAGAT
CGTCGGCGGCGTTAACAACCTCTACGAGGGAGTCAACGGCGTCGCCCCTG
CTGCCAACGGCGGCGTAGTCCCGGAAAGAAGGAAGAAGAAGAAAAAGAAA
GGCTGCTGCGCTTTGATCTGCAAGTGTTGTTGCCCTTGGAAGAGCGTGGC
CGCCCGTGTGGAGCCGGGGGACTCGTCGGACGAGGACGAGGAGGCCAAGG
CCGACGCTAAGGCGTTCGTCAACACGATCAAGAACATGACGGGGCTGTGG
GACGACGACCCGGACGAGGCAAGAAAAGAAGAAAAATATAGAATAGAGGA
AGAACAAATGGGCAAGTGCTTGATGGGCGTCCAGATTTGGCCCATCGAGA
AGGCGGAGCTGCAGCCGGTCGGCAACGGCCGCAATGATCCCAACAGCCAG
CCCTTCCTGCCCCCGCCGGCGGGGCGCCTGCGGTTCAGCCTGAACCCCTT
CGTGATGGGGTCGGAGCTATTCGGGCCGAAGATCTGCGCCAAGATCGCGT
GCGTGTGCTGTTGCGTGATCAGCATCCTGCTCCTCGTATACTTCAGCGGG
TTCTTCAACCTGCTCCTCACGTTCGCGCTTAGCCTCATCACTAACTAAAG
CGAGCGGCGTTCGTTGTTGTCGGTGTTGTT back to topprotein sequence of EsuBft982_2a-0001 >EsuBft982_2 ID=EsuBft982_2|Name=EsuBft982_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=325bp
MKFKVSLGPRTRAWKFPYLTVQLWDRDLFKFNDHIAEGQLDLGPYFIKAY
KTSETVKLFPTLDPKLEAMRKADVGNMDVDAALEGNDAAKERLLAGLESG
PAAYDPERGERPPPPAYNNVTSNGSEIVGGVNNLYEGVNGVAPAANGGVV
PERRKKKKKKGCCALICKCCCPWKSVAARVEPGDSSDEDEEAKADAKAFV
NTIKNMTGLWDDDPDEARKEEKYRIEEEQMGKCLMGVQIWPIEKAELQPV
GNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVI
SILLLVYFSGFFNLLLTFALSLITN back to topmRNA from alignment at Scaffold_360:417906..422358+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft982_2a-0001 ID=EsuBft982_2a-0001|Name=EsuBft982_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4453bp|location=Sequence derived from alignment at Scaffold_360:417906..422358+ (Ectocarpus subulatus male Bft15b)
AGGGCTCTTTCAACTGGCGGATGAAGTTCAAGGTCTCGCTCGGCCCCCGC
ACAAGGGCGTGGAAGTTCCCGTACCTGACCGTGCAGGTGATTTTGGTTCG
CCCCATATATTGTTTGCCATATTTTTTGCGGGTTTTGCTGCAGGTTTGAT
TTATGTCTTGTCTTCGTTGATTTTGGTGGTGACGTCGCTCGAAGTTTGTG
AAAAGCGGTCGCTGCCTCCCTGCCTGCCCCTGACGCTCACGTCACTCTGC
AGCAGCACCGGGCGGAACTGCCGTTGAGGTTGTGGATTGGATGGGTTTCC
CTGCTGTTTTTGGGCGTGTTTGCTTGCTGGCTGTCGTGCTGGTTGCTGAG
GCTGCGTCTCTCGCGGGGATATACTAGGCTTCGGCCTCCTCTCACGTCGT
GTTGTTTGGTGTCGATTGAGAACGTACACAAGATGTTTGAACAAATCATA
CTGTCGTAGAGTGAGCTTGACGTGACCTGCATGCCTTTTGATTGACCCTG
TCTGCCGGAGGCTGGCCATGGTATTTCTGGGATCCCATGCTACTCGTGGT
ATATGTCTGCGTGGGCGACTGCTGGGTCTCGATCTATCCCACTATTGTTT
CGTAGCTCCGATTTCCGCCGCTCCCGACTGGAGCGTGCTCCAGTGGCTAT
TGTGAAACTGGCAGTAGACTACCGTCATTGGGTCGTTTGCACTTCTTCCC
CTACCCCTTTCCGTCTACCTCGCTCTCGCGGTAAATACAGCAGTACCCGT
AGCGCTATAAGGATGCGGTACACCGGGGTTGTCATGATGTCATGATGCTA
CGATTTATTTTTCTCCATGCAGATAACTGTGAAGTCTTTGTGCACTCACC
CACATCATCCTCTCTCTTGTCCTTGTCTGTCTCTTTCTGCCGCACGTGTG
CGTCCAGCATATTACATTGATCTCTGACCGCCGTACTCCAATCCCATGTT
TCATTGAAGCTCACTCTAGCCGCTCCCCGCCCTATAACCCACACACCTCT
TTCTTTCCCTTTTTTCTTTCGTGGTCCAGCTGTGGGACCGAGACTTGTTC
AAGTTCAACGACCACATCGCCGAGGGCCAGCTGGACCTCGGTCCGTACTT
CATCAAGGCCTACAAGACCTCTGAAACCGTCAAGCTCTTCCCCACCCTCG
ACCCCAAGCTAGAGGCCATGCGAAAGGCGGATGTAAGCATACATCTGTAC
ACGCGGAATGGGTCTGCGTTTGTTGCTGTTGCTAGTGCTCCTTCATGTTG
TTGTTGTTGTCATCTTGAAATCGAAAAACCGTTCCGGTCTCTGCTCAGTA
CCTGCTAGCATCACCTGTTCGTTGTGGTAAGAATTAAAATCGATCACCGA
TGGCGTGTACAGTAATTTAGAGCTGGAGACGCCGTCGTCGGAAAAGACGG
AAACGAATGGCATTTTTTTTTTGTAAACCAGCGAAACAAGAATGCCTCCG
TTTACCAAGAAGAATACGACTTTGTGTGGGGAACACTTGCGTTCGTCCAC
TGCTTCTGCGTAACGCTGAGCTTGTTCCCGGCTTGTGCGTGTGTGTGTGT
TGCGATATAGTTTGCTTCCACCCGCATGTTTTTTTTTGTGATTTTTTTTA
CACATAGCAGCAGCACAAAGAAGTGTGGACCGTAAGTCGTTTGGGGATTG
GGTAGAGGACGGCGGGGGCTGACGTTTTTCTTTTTTCGTTTGATGGTCTG
TCAATCTGTCTGTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCATCGGCC
GGTCGGTGTCCTTGCTCTCTCCGCAGGTGGGGAACATGGACGTGGACGCC
GCGCTGGAGGGGAACGATGCTGCGAAGGAGCGCCTCTTGGCGGGACTCGA
GAGCGGCCCCGCGGCGTACGACCCGGAGAGGGGGGAGAGGCCGCCGCCCC
CCGCGTACAACAACGTTACCTCGAATGGGTCGGAGATCGTCGGCGGCGTT
AACAACCTCTACGAGGTGAGAATGACAAAAAAAAAAGAAACGTTTTTTTT
TTTTCTATTGACATAACAATGAGAAGCGTGAGACGCCGGGAGCGGTGATA
GGATTTGACAGCAATGCATCGTGTTTTCATTCTTTTTCTTTTTTCCTTTT
AATGTTTTTGTTTTCTTATGTTTGATCGTGAAGATTGTATGAACGAGCAG
CGGATGAGACAGGGTGTGTTGGCTACCTGTATGTTCCTTACTTGAGGCTT
TAGAGGAGATACCTTTGTGATAGTACATGTACAAGGTACACCGTAAAATA
CGGAGGTGGCGTGCGGAACTGCTGTAGACGTAGGTTGACCTCGTACAAGA
CGCACCCTTCAGCGTGAGGTACTGCAACAACAACCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNCCCCCCCCCCCCCCCC
GTTCCATGACTACTTTCCAGGGGAGCCCTGTTCCAGACCAGCAGGGAGTC
AACGGCGTCGCCCCTGCTGCCAACGGCGGCGTAGTCCCGGAAAGAAGGAA
GAAGAAGAAAAAGAAAGGCTGCTGCGCTTTGATCTGCAAGTGTTGTTGCC
CTTGGAAGAGCGTGGCCGCCCGTGTGGAGCCGGGGGACTCGTCGGACGAG
GACGAGGAGGCCAAGGCCGACGCTAAGGCGTTCGTCAACACGATCAAGAA
CATGACGGGGCTGTGGGACGACGACCCGGACGAGGCAAGAAAAGAAGAAA
AATATAGAATAGAGGAAGTTTTATCTTTGCCTTTATTGTTGTTTCGAAAG
CACAGCGAGTTTTCGATTTCTGTTTCGTGTTTCTTTAATAGCAGGGCACA
GGCTAGGCTTCCCTCGCTATTGGTGGAGATGGCGCTTTTGTTTGTGCACC
AATGGTTGCGTCTCACTCGGAAACGATGGTGGCCCCACAGCACCATCAGT
AAAGCACCATGAAGGACAGGAACGGTATCAGCCAGAGTAGCCCACGTCAA
ACGTGGCATAAAACATCCACCCTCCCGTGACTGTTGCTTGTGTTCCCATG
AAGAGCGAGGTCCGTTTTGTCGTTCTGAACGGAATGCGTGGTTGATGGTC
ACAGGACCCAAGAGCGAGTACTATTTTTACAGTAGTACTAACAAACGACC
ACCGCCCCCACACTTGCTCCCTCCCCCCCTCCNNNNNNNNNNNNNNNNNN
NNNNNNNNTGCCCCCCCCCCCCCCCCCCCCCCCCCCAAACCTTTTCATCA
GAGCTATTGGCTTAACATGGAAAGGACCAACTACGCGACCGGTCAGAAAG
TGAGTATCAGTACGAGCGGGCTCGTTCGTCGCATGTTTTAGCGTTGTAGC
TGAGAGACGGCTGAATTTGTTTTTCTTGTTGAGAAACGCCGCAGCATGAA
GTCTAGGTTGAGTTCTAGTGAAGTTGAAATGGGTATTTTTGGTGGGCTGA
ATGATGTGTCGGCGTGTGCGCCGTACAGCGTTTGTGCATCAGTGCTATTG
CTGTTCTTCTTGTTCTTTTCTCCGTCGGGCGCCCTAGTTGGGTTTTTGCT
TTGGCCTATCAAAGCTCTCGCCTACGGATGCGGGTTCATTATGATTATGA
CATGCACTTGATGGATCCATGTGGTGTTGGGTCTTAAGACGGACTCTCCC
CCTTTTGCATGTGCTCACACGTGATTCCAGCCCTCTTTTTGTTCTGCTAA
GAGATTTTTTTCTCTCGTCGTTTCTTCCCTTTTCGGCATGGATTTTGATG
TTGGGTCATTCTTGTCCATCTTCCTCGTTCCCTCCTCTCCTCTCCTGTTC
TTTTGTCTTGCGGTGTGCTGCTCGCGTGCACACACATACATCATGACGCT
CACGGGGCCCTGAGATCATGGCCGAAGAGGCATTTTGTGCTTTCAACCGC
ACTGAGACTGGCGTATTTTCATTGGTCAGCCGTTTAGCGCGGTCGATGCT
AATGGGAAAGAAAATAAACACACACAGCAGTTAATGACATTTAGAAGTGT
TTTGTGTTTTTAAACCGCACTGAGACTGACGCCTTTTCATTGGTCAGCCG
ATTAGCGCGGTCGATGCTAACAATAAAGACACAAACACACACACCACCCC
CGAAACCAGTACACACACACCCATATCCCCCCCGCGTGCACACGCCCACC
CCGGCCCCGCGCACGCACGCACAGGAACAAATGGGCAAGTGCTTGATGGG
CGTCCAGATTTGGCCCATCGAGAAGGCGGAGCTGCAGCCGGTCGGCAACG
GCCGCAATGATCCCAACAGCCAGCCCTTCCTGCCCCCGCCGGCGGGGCGC
CTGCGGTTCAGCCTGAACCCCTTCGTGATGGGGTCGGAGCTATTCGGGCC
GAAGATCTGCGCCAAGATCGCGTGCGTGTGCTGTTGCGTGATCAGCATCC
TGCTCCTCGTATACTTCAGCGGGTTCTTCAACCTGCTCCTCACGTTCGCG
CTTAGCCTCATCACTAACTAAAGCGAGCGGCGTTCGTTGTTGTCGGTGTT
GTT back to topCoding sequence (CDS) from alignment at Scaffold_360:417906..422358+ >EsuBft982_2a-0001 ID=EsuBft982_2a-0001|Name=EsuBft982_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=978bp|location=Sequence derived from alignment at Scaffold_360:417906..422358+ (Ectocarpus subulatus male Bft15b)
ATGAAGTTCAAGGTCTCGCTCGGCCCCCGCACAAGGGCGTGGAAGTTCCC
GTACCTGACCGTGCAGCTGTGGGACCGAGACTTGTTCAAGTTCAACGACC
ACATCGCCGAGGGCCAGCTGGACCTCGGTCCGTACTTCATCAAGGCCTAC
AAGACCTCTGAAACCGTCAAGCTCTTCCCCACCCTCGACCCCAAGCTAGA
GGCCATGCGAAAGGCGGATGTGGGGAACATGGACGTGGACGCCGCGCTGG
AGGGGAACGATGCTGCGAAGGAGCGCCTCTTGGCGGGACTCGAGAGCGGC
CCCGCGGCGTACGACCCGGAGAGGGGGGAGAGGCCGCCGCCCCCCGCGTA
CAACAACGTTACCTCGAATGGGTCGGAGATCGTCGGCGGCGTTAACAACC
TCTACGAGGGAGTCAACGGCGTCGCCCCTGCTGCCAACGGCGGCGTAGTC
CCGGAAAGAAGGAAGAAGAAGAAAAAGAAAGGCTGCTGCGCTTTGATCTG
CAAGTGTTGTTGCCCTTGGAAGAGCGTGGCCGCCCGTGTGGAGCCGGGGG
ACTCGTCGGACGAGGACGAGGAGGCCAAGGCCGACGCTAAGGCGTTCGTC
AACACGATCAAGAACATGACGGGGCTGTGGGACGACGACCCGGACGAGGC
AAGAAAAGAAGAAAAATATAGAATAGAGGAAGAACAAATGGGCAAGTGCT
TGATGGGCGTCCAGATTTGGCCCATCGAGAAGGCGGAGCTGCAGCCGGTC
GGCAACGGCCGCAATGATCCCAACAGCCAGCCCTTCCTGCCCCCGCCGGC
GGGGCGCCTGCGGTTCAGCCTGAACCCCTTCGTGATGGGGTCGGAGCTAT
TCGGGCCGAAGATCTGCGCCAAGATCGCGTGCGTGTGCTGTTGCGTGATC
AGCATCCTGCTCCTCGTATACTTCAGCGGGTTCTTCAACCTGCTCCTCAC
GTTCGCGCTTAGCCTCATCACTAACTAA back to top
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