EsuBft982_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft982_8a-0001
Unique NameEsuBft982_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_360contigScaffold_360:355573..357340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft982_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length103
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft982_8aEsuBft982_8aEctocarpus subulatus male Bft15bgeneScaffold_360 355573..357340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_8a-0001EsuBft982_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_360 355612..356804 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_8a-0001-exonagat-exon-72955Ectocarpus subulatus male Bft15bexonScaffold_360 355573..355962 -
EsuBft982_8a-0001-exonEsuBft982_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_360 356517..357056 -
EsuBft982_8a-0001-exonagat-exon-72956Ectocarpus subulatus male Bft15bexonScaffold_360 357240..357340 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_8a-0001-exonagat-three_prime_utr-23770Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_360 355573..355611 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_8a-0001-cdsEsuBft982_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_360 355612..355962 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_8a-0001-exonagat-five_prime_utr-15485Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_360 356805..357056 -
EsuBft982_8a-0001-exonagat-five_prime_utr-15486Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_360 357240..357340 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft982_8a-0001 ID=EsuBft982_8a-0001|Name=EsuBft982_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1031bp|location=Sequence derived from alignment at Scaffold_360:355573..357340- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GACTATTATGGTGGGCGCGGATCCGCTGCTGCGTCCCACAGGAGATGCAG
TCTACCCGTGGCACATCATGTTGCATCATGCTAGAAGGGGTTACCCGCAG
CCGTTACTTCTCCTGCATCCCGCTGTAGCCACAGTAGATGCAGTCTACCC
GAAAGAATTTCGAAACAACTACTGCGAAGCACCGCGGACCCGGTGCAGTT
GACACTCTGCGCAATAGCCATTCCGTGCGCTGCAAGACGGCCGGTGTTCA
CGGACTCGTTTAGTGGCGAGACCTATGCTCCCTCCTCTACTCAAAACGCA
CATGTATCTGGTGTAAAAAATGGAGCCGAAGCAAGTCCCCACTACGACAT
TCAATGGCGCTCCCACCCTTGTCCTCTACAGGTCTGCAGAACGTAGTGTT
GAAAGTGAATGGGAGCGGGCGTTCGGTCGGCGAAAGGTGGGACACCTGCT
GGAAGACTCTCAACCAGGAGCCCCTGGTCAGGCTGTTCAAGGATAAGACT
TCCAAAAATTGCAAGTCGCGCTACGACAAGATCGTTGACGACCAGAGCAA
GAGCGATGGTAAAGCCCTGCGAGACTCCGGAGCCGGCACTGCTGAGAGTG
ACGCGGAGGACGAAGTAGAGAAGAATACCAAGGTCCAGCTGGACAAAGTT
CTGACCGCGATAGTGGACGCCAAGGCTGCCGCGAGGCAGGACTCGGAGGA
GACCAAGCAGAAGCAAGCCGACGAGGCGGCCTCGCACTCCGCGATGAGGA
TGTGGGCCATCAACCAGGGCAACGCCCGATGCGGGCCGGGCGCGAAGGCT
ACATCATTCCAAGAAGCTGTTGCCGCCGACAACATCGCGTTGGGTTCCCG
CTCCGGTGCAGTGGACGGTGGCCGTGCCAGCGGTCGGGTGAGTCCGGCCA
GCAGCATCGGGGGGGCGAGGCCCGCGTCGGAGGCTTCGGCGGGTGGCGCT
GCCAGCGGTCGATCGAGCCCGACCATGAGTACGGGCGGCTAGACGACGAC
TTATCGCCCGCGGGGAGCGGGCCATCGAGGA
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protein sequence of EsuBft982_8a-0001

>EsuBft982_8 ID=EsuBft982_8|Name=EsuBft982_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=212bp
MALPPLSSTGLQNVVLKVNGSGRSVGERWDTCWKTLNQEPLVRLFKDKTS
KNCKSRYDKIVDDQSKSDGKALRDSGAGTAESDAEDEVEKNTKVQLDKVL
TAIVDAKAAARQDSEETKQKQADEAASHSAMRMWAINQGNARCGPGAKAT
SFQEAVAADNIALGSRSGAVDGGRASGRVSPASSIGGARPASEASAGGAA
SGRSSPTMSTGG
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mRNA from alignment at Scaffold_360:355573..357340-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft982_8a-0001 ID=EsuBft982_8a-0001|Name=EsuBft982_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1768bp|location=Sequence derived from alignment at Scaffold_360:355573..357340- (Ectocarpus subulatus male Bft15b)
GACTATTATGGTGGGCGCGGATCCGCTGCTGCGTCCCACAGGAGATGCAG
TCTACCCGTGGCACATCATGTTGCATCATGCTAGAAGGGGTTACCCGCAG
CGTTACTTCTCCTGCATCCCGCTGTAGCCACAGTAGATGCAGTCTACCCG
TGGCACATCATGTTGCATCATGCTAGAAGGGGTTACCCGCAGCGTTACTT
CTCCTGCATCCCGCTGTAGCCACAGTAGATGCAGTCTACCCGTGGCACAT
CATGTTGCATCATGCTAGAAGGGGTTACCCGCAGCGTTACTTCTCCTGCA
TCCCGCTGTAGCCACAGTAGATGCAGTCTACCCGAAAGAATTTCGAAACA
ACTACTGCGAAGCACCGCGGACCCGGTGCAGTTGACACTCTGCGCAATAG
CCATTCCGTGCGCTGCAAGACGGCCGGTGTTCACGGACTCGTTTAGTGGC
GAGACCTATGCTCCCTCCTCTACTCAAAACGCACATGTATCTGGTGTAAA
AAATGGAGCCGAAGCAAGTCCCCACTACGACATTCAATGGCGCTCCCACC
CTTGTCCTCTACAGGTCTGCAGAACGTAGTGTTGAAAGTGAATGGGAGCG
GGCGTTCGGTCGGCGAAAGGTGGGACACCTGCTGGAAGACTCTCAACCAG
GAGCCCCTGGTCAGGCTGTTCAAGGATAAGACTTCCAAAAATTGCAAGTC
GCGCTACGACAAGATCGTTGACGACCAGAGCAAGAGCGATGGTAAAGCCC
TGCGAGACTCCGGAGCCGGCACTGCTGAGAGTGACGCGGAGGACGAAGTA
GAGAAGAATACCAAGGTCCAGCTGGTGAGGGGTCTAGAGCCAGTAAGCTA
TCTCTACCTTTTGTGACGGGCGCAAGCCTGAGTGTACACGATCATGGCAC
AGTCTAAACAAGACGGGCACAAATATCTGCACATGGAGAATCCACAATCC
ATAGGGTATCGTGAAACACCTGCGCTGTCCCGACCGAAGAAAATGCCTGC
CGTCGTCACCAACGTTACACTTGCAGAGAAGAGGGGTACGCACAGGGTTA
GCTGTAAGTCCAACTTAAAATGCGCAGCATGACAAAATAAAGACAGAGGT
AGATAGACAGCATGAAAGTTCGAGTGCTACACGCCAGGCGACGCAAAACG
TGCAGAGTTAGCTTGCTGAGACGGTCCTTCAACCACAAAATAAAAACAGC
GTCGAGGTTTTCACTCCCACTCTGTATTGTTTAGGGGCGTGACGTAGCAG
TGTTGACACGGAAGTACAAAACAGACGATGCATATAGCTATCGCCGACGC
TAGTGATGCACTTTGTAAGTCGTAGAGCTGACGAGATGCCGCGCCGCTGT
TGCTTCTTGTCCGCGATGTGCCGCACAGGACAAAGTTCTGACCGCGATAG
TGGACGCCAAGGCTGCCGCGAGGCAGGACTCGGAGGAGACCAAGCAGAAG
CAAGCCGACGAGGCGGCCTCGCACTCCGCGATGAGGATGTGGGCCATCAA
CCAGGGCAACGCCCGATGCGGGCCGGGCGCGAAGGCTACATCATTCCAAG
AAGCTGTTGCCGCCGACAACATCGCGTTGGGTTCCCGCTCCGGTGCAGTG
GACGGTGGCCGTGCCAGCGGTCGGGTGAGTCCGGCCAGCAGCATCGGGGG
GGCGAGGCCCGCGTCGGAGGCTTCGGCGGGTGGCGCTGCCAGCGGTCGAT
CGAGCCCGACCATGAGTACGGGCGGCTAGACGACGACTTATCGCCCGCGG
GGAGCGGGCCATCGAGGA
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Coding sequence (CDS) from alignment at Scaffold_360:355573..357340-

>EsuBft982_8a-0001 ID=EsuBft982_8a-0001|Name=EsuBft982_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=639bp|location=Sequence derived from alignment at Scaffold_360:355573..357340- (Ectocarpus subulatus male Bft15b)
ATGGCGCTCCCACCCTTGTCCTCTACAGGTCTGCAGAACGTAGTGTTGAA
AGTGAATGGGAGCGGGCGTTCGGTCGGCGAAAGGTGGGACACCTGCTGGA
AGACTCTCAACCAGGAGCCCCTGGTCAGGCTGTTCAAGGATAAGACTTCC
AAAAATTGCAAGTCGCGCTACGACAAGATCGTTGACGACCAGAGCAAGAG
CGATGGTAAAGCCCTGCGAGACTCCGGAGCCGGCACTGCTGAGAGTGACG
CGGAGGACGAAGTAGAGAAGAATACCAAGGTCCAGCTGGACAAAGTTCTG
ACCGCGATAGTGGACGCCAAGGCTGCCGCGAGGCAGGACTCGGAGGAGAC
CAAGCAGAAGCAAGCCGACGAGGCGGCCTCGCACTCCGCGATGAGGATGT
GGGCCATCAACCAGGGCAACGCCCGATGCGGGCCGGGCGCGAAGGCTACA
TCATTCCAAGAAGCTGTTGCCGCCGACAACATCGCGTTGGGTTCCCGCTC
CGGTGCAGTGGACGGTGGCCGTGCCAGCGGTCGGGTGAGTCCGGCCAGCA
GCATCGGGGGGGCGAGGCCCGCGTCGGAGGCTTCGGCGGGTGGCGCTGCC
AGCGGTCGATCGAGCCCGACCATGAGTACGGGCGGCTAG
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